Wall clock time and date at job start Wed Apr 1 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00353 * 2 1 4 4 C 1.52995 * 109.47140 * 66.04345 * 3 2 1 5 5 N 1.46501 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99916 * 270.00323 * 5 4 3 7 7 C 1.34775 * 119.99766 * 89.99832 * 5 4 3 8 8 O 1.21281 * 120.00291 * 0.02562 * 7 5 4 9 9 C 1.50699 * 119.99924 * 179.97438 * 7 5 4 10 10 C 1.52999 * 109.47255 * 180.02562 * 9 7 5 11 11 C 1.53786 * 113.61361 * 185.00024 * 10 9 7 12 12 C 1.53781 * 87.17350 * 220.06273 * 11 10 9 13 13 F 1.39895 * 113.61535 * 139.93941 * 12 11 10 14 14 F 1.39898 * 113.61514 * 270.84285 * 12 11 10 15 15 C 1.53782 * 87.08260 * 25.39213 * 12 11 10 16 16 C 1.46907 * 110.99884 * 236.04752 * 2 1 3 17 17 C 1.50700 * 109.46966 * 293.95254 * 16 2 1 18 18 O 1.21292 * 120.00049 * 359.97438 * 17 16 2 19 19 N 1.34776 * 120.00039 * 180.02562 * 17 16 2 20 20 C 1.37104 * 120.00003 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99632 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99646 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00417 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99816 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47168 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47471 * 119.99465 * 24 22 20 27 27 H 1.48503 * 109.47397 * 239.99930 * 24 22 20 28 28 H 1.08999 * 109.47224 * 60.00148 * 1 2 3 29 29 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47020 * 300.00153 * 1 2 3 31 31 H 1.09007 * 109.46669 * 306.04714 * 3 2 1 32 32 H 1.08995 * 109.47330 * 186.04873 * 3 2 1 33 33 H 1.09003 * 109.47006 * 60.00080 * 4 3 2 34 34 H 1.09004 * 109.47180 * 300.00557 * 4 3 2 35 35 H 1.09002 * 109.46843 * 269.99691 * 6 5 4 36 36 H 1.08993 * 109.46923 * 29.99500 * 6 5 4 37 37 H 1.08997 * 109.47024 * 150.00397 * 6 5 4 38 38 H 1.09002 * 109.47284 * 60.00086 * 9 7 5 39 39 H 1.09004 * 109.47159 * 300.00284 * 9 7 5 40 40 H 1.08993 * 112.90825 * 316.25225 * 10 9 7 41 41 H 1.09002 * 113.61357 * 105.47190 * 11 10 9 42 42 H 1.09002 * 113.61608 * 334.65352 * 11 10 9 43 43 H 1.08997 * 113.61668 * 89.11298 * 15 12 11 44 44 H 1.08998 * 113.61674 * 219.93807 * 15 12 11 45 45 H 1.08996 * 109.47353 * 53.95254 * 16 2 1 46 46 H 1.09007 * 109.46953 * 173.95745 * 16 2 1 47 47 H 0.97004 * 119.99998 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00072 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1560 3.4253 1.3180 6 6 3.5010 3.6941 1.8328 7 6 1.4013 4.4364 0.8441 8 8 0.2877 4.2139 0.4182 9 6 1.9406 5.8435 0.8444 10 6 0.8921 6.7917 0.2592 11 6 1.3894 8.2384 0.1015 12 6 -0.0001 8.6880 0.5831 13 9 0.0356 9.7829 1.4532 14 9 -0.9282 8.8449 -0.4518 15 6 -0.1027 7.3326 1.3024 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9729 18 8 1.0054 -2.5833 -0.0030 19 7 2.0188 -3.1181 -1.9028 20 6 1.6921 -4.4413 -1.7532 21 1 1.1292 -4.7641 -0.8899 22 6 2.0855 -5.3666 -2.7121 23 7 2.7701 -4.9736 -3.7628 24 14 1.6411 -7.1694 -2.5080 25 1 0.8739 -7.3507 -1.2494 26 1 0.8137 -7.6089 -3.6601 27 1 2.8828 -7.9821 -2.4516 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4264 35 1 3.4451 3.9103 2.8997 36 1 4.1329 2.8208 1.6717 37 1 3.9254 4.5513 1.3102 38 1 2.8466 5.8855 0.2398 39 1 2.1715 6.1439 1.8664 40 1 0.4133 6.3946 -0.6358 41 1 1.6049 8.5160 -0.9303 42 1 2.1951 8.5003 0.7873 43 1 0.2949 7.3457 2.3172 44 1 -1.0922 6.8797 1.2413 45 1 1.5610 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5241 -2.8280 -2.6783 48 1 3.0449 -5.6197 -4.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715870797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:46 Heat of formation + Delta-G solvation = -138.454790 kcal Electronic energy + Delta-G solvation = -30168.621892 eV Core-core repulsion = 25509.541732 eV Total energy + Delta-G solvation = -4659.080160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.17905 -47.51974 -40.45993 -38.70126 -38.24464 -36.69258 -35.48242 -33.84014 -31.40152 -31.19401 -29.39697 -27.67238 -26.97569 -26.73930 -25.38761 -24.31907 -23.18183 -21.21701 -20.41278 -19.47310 -19.10167 -17.84051 -17.80070 -17.42694 -16.99951 -16.72075 -16.46252 -16.23493 -15.83578 -15.26121 -15.01266 -14.63141 -14.52120 -14.39261 -13.97930 -13.96305 -13.82622 -13.73984 -13.56002 -13.36160 -13.25572 -13.05530 -12.84831 -12.79500 -12.58820 -12.08702 -12.03160 -11.76173 -11.61781 -11.50507 -11.35482 -11.29783 -11.21738 -10.93084 -10.85876 -10.77609 -10.33564 -10.21894 -10.05261 -9.47768 -9.00625 -8.41640 -7.96971 -7.84923 -6.40975 -3.81658 2.34196 2.63645 3.05677 3.16811 3.27330 3.34226 3.34708 3.76413 3.84773 3.86681 3.91785 4.07476 4.26390 4.32812 4.62017 4.72966 4.79660 4.89424 4.92217 4.93392 5.00952 5.03745 5.13484 5.17599 5.20545 5.26422 5.30322 5.32781 5.35278 5.49525 5.68889 5.74550 5.77734 5.81160 5.89784 5.97612 6.06812 6.23897 6.30349 6.60987 7.07680 7.27127 7.38989 7.56295 7.89662 8.07739 8.62949 9.19228 9.55632 10.07543 10.76913 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.001565 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.619500 B =17886.852271 C =18157.336970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.042 3.958 4 C 0.117 3.883 5 N -0.616 5.616 6 C 0.075 3.925 7 C 0.510 3.490 8 O -0.533 6.533 9 C -0.128 4.128 10 C -0.089 4.089 11 C -0.162 4.162 12 C 0.252 3.748 13 F -0.193 7.193 14 F -0.179 7.179 15 C -0.159 4.159 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.016 0.984 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 27.842 8.809 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.241 5.241 3 C -0.087 4.087 4 C -0.005 4.005 5 N -0.350 5.350 6 C -0.068 4.068 7 C 0.298 3.702 8 O -0.409 6.409 9 C -0.167 4.167 10 C -0.108 4.108 11 C -0.200 4.200 12 C 0.216 3.784 13 F -0.174 7.174 14 F -0.160 7.160 15 C -0.197 4.197 16 C -0.084 4.084 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.034 0.966 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.583 27.158 9.515 28.892 hybrid contribution -0.023 -0.154 -1.293 1.303 sum 2.559 27.003 8.222 28.343 Atomic orbital electron populations 1.22572 0.86536 1.04312 0.99235 1.61532 1.08933 1.10798 1.42803 1.22421 1.00046 0.89292 0.96968 1.21494 1.00944 0.79914 0.98166 1.47894 1.16624 1.07889 1.62628 1.21864 0.83067 1.02740 0.99144 1.20618 0.85435 0.86831 0.77321 1.90735 1.19665 1.84628 1.45848 1.21645 0.99719 0.91862 1.03505 1.22213 0.95732 0.92781 1.00062 1.24186 0.95272 0.95835 1.04711 1.22076 0.90459 0.84362 0.81527 1.93008 1.96836 1.58060 1.69482 1.93031 1.67898 1.96232 1.58801 1.24206 1.03344 0.91907 1.00233 1.21857 1.00525 0.94161 0.91897 1.19722 0.85394 0.86601 0.85241 1.90483 1.43853 1.80131 1.31608 1.41877 1.49475 1.07377 1.21477 1.19755 1.32782 0.82267 1.07911 0.87837 1.25260 0.96868 1.00575 0.95312 1.69622 1.38191 1.35638 1.10942 0.85800 0.78185 0.81935 0.78421 1.19219 1.20800 1.20777 0.96587 0.88590 0.92058 0.94810 0.91043 0.89412 0.89497 0.92307 0.90436 0.91015 0.88014 0.88361 0.86686 0.88601 0.86866 0.87186 0.88399 0.93482 0.89509 0.77518 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.96 60.06 0.54 0.90 16 2 N -0.52 -8.74 4.50 -244.37 -1.10 -9.84 16 3 C 0.04 0.56 5.28 -3.83 -0.02 0.54 16 4 C 0.12 1.34 5.33 -4.04 -0.02 1.31 16 5 N -0.62 -5.39 2.87 -181.57 -0.52 -5.91 16 6 C 0.08 0.36 10.24 59.85 0.61 0.98 16 7 C 0.51 4.86 7.67 -10.99 -0.08 4.78 16 8 O -0.53 -7.33 15.34 5.56 0.09 -7.24 16 9 C -0.13 -0.66 4.09 -27.88 -0.11 -0.77 16 10 C -0.09 -0.56 3.14 -89.71 -0.28 -0.84 16 11 C -0.16 -0.78 7.42 -25.92 -0.19 -0.98 16 12 C 0.25 1.91 3.28 -25.92 -0.08 1.83 16 13 F -0.19 -1.70 17.41 2.25 0.04 -1.66 16 14 F -0.18 -1.76 17.38 2.25 0.04 -1.72 16 15 C -0.16 -1.06 7.43 -25.82 -0.19 -1.25 16 16 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 17 C 0.45 10.55 7.47 -10.99 -0.08 10.47 16 18 O -0.58 -15.52 13.91 5.55 0.08 -15.44 16 19 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 1.96 5.83 -51.93 -0.30 1.66 16 30 H 0.06 0.95 6.47 -51.93 -0.34 0.61 16 31 H 0.03 0.48 8.12 -51.92 -0.42 0.06 16 32 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.09 1.15 5.83 -51.93 -0.30 0.85 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.07 0.19 6.44 -51.93 -0.33 -0.14 16 38 H 0.10 0.33 7.40 -51.93 -0.38 -0.05 16 39 H 0.10 0.30 7.81 -51.93 -0.41 -0.10 16 40 H 0.12 0.96 7.68 -51.93 -0.40 0.56 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 0.32 8.10 -51.93 -0.42 -0.10 16 43 H 0.11 0.55 7.90 -51.93 -0.41 0.14 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 46 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -34.21 399.20 -7.24 -41.44 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.32 Total: 6.79 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -0.19 Total: 9.81 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.96 Total: -54.04 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.16 Total: -22.68 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.21 -7.24 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715870797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.013 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds