Wall clock time and date at job start Wed Apr 1 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00353 * 2 1 4 4 C 1.52995 * 109.47140 * 66.04345 * 3 2 1 5 5 N 1.46501 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99916 * 270.00323 * 5 4 3 7 7 C 1.34775 * 119.99766 * 89.99832 * 5 4 3 8 8 O 1.21281 * 120.00291 * 0.02562 * 7 5 4 9 9 C 1.50699 * 119.99924 * 179.97438 * 7 5 4 10 10 C 1.52999 * 109.47255 * 180.02562 * 9 7 5 11 11 C 1.53786 * 113.61361 * 185.00024 * 10 9 7 12 12 C 1.53781 * 87.17350 * 220.06273 * 11 10 9 13 13 F 1.39895 * 113.61535 * 139.93941 * 12 11 10 14 14 F 1.39898 * 113.61514 * 270.84285 * 12 11 10 15 15 C 1.53782 * 87.08260 * 25.39213 * 12 11 10 16 16 C 1.46907 * 110.99884 * 236.04752 * 2 1 3 17 17 C 1.50700 * 109.46966 * 293.95254 * 16 2 1 18 18 O 1.21292 * 120.00049 * 359.97438 * 17 16 2 19 19 N 1.34776 * 120.00039 * 180.02562 * 17 16 2 20 20 C 1.37104 * 120.00003 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99632 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99646 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00417 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99816 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47168 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47471 * 119.99465 * 24 22 20 27 27 H 1.48503 * 109.47397 * 239.99930 * 24 22 20 28 28 H 1.08999 * 109.47224 * 60.00148 * 1 2 3 29 29 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47020 * 300.00153 * 1 2 3 31 31 H 1.09007 * 109.46669 * 306.04714 * 3 2 1 32 32 H 1.08995 * 109.47330 * 186.04873 * 3 2 1 33 33 H 1.09003 * 109.47006 * 60.00080 * 4 3 2 34 34 H 1.09004 * 109.47180 * 300.00557 * 4 3 2 35 35 H 1.09002 * 109.46843 * 269.99691 * 6 5 4 36 36 H 1.08993 * 109.46923 * 29.99500 * 6 5 4 37 37 H 1.08997 * 109.47024 * 150.00397 * 6 5 4 38 38 H 1.09002 * 109.47284 * 60.00086 * 9 7 5 39 39 H 1.09004 * 109.47159 * 300.00284 * 9 7 5 40 40 H 1.08993 * 112.90825 * 316.25225 * 10 9 7 41 41 H 1.09002 * 113.61357 * 105.47190 * 11 10 9 42 42 H 1.09002 * 113.61608 * 334.65352 * 11 10 9 43 43 H 1.08997 * 113.61668 * 89.11298 * 15 12 11 44 44 H 1.08998 * 113.61674 * 219.93807 * 15 12 11 45 45 H 1.08996 * 109.47353 * 53.95254 * 16 2 1 46 46 H 1.09007 * 109.46953 * 173.95745 * 16 2 1 47 47 H 0.97004 * 119.99998 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00072 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1560 3.4253 1.3180 6 6 3.5010 3.6941 1.8328 7 6 1.4013 4.4364 0.8441 8 8 0.2877 4.2139 0.4182 9 6 1.9406 5.8435 0.8444 10 6 0.8921 6.7917 0.2592 11 6 1.3894 8.2384 0.1015 12 6 -0.0001 8.6880 0.5831 13 9 0.0356 9.7829 1.4532 14 9 -0.9282 8.8449 -0.4518 15 6 -0.1027 7.3326 1.3024 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9729 18 8 1.0054 -2.5833 -0.0030 19 7 2.0188 -3.1181 -1.9028 20 6 1.6921 -4.4413 -1.7532 21 1 1.1292 -4.7641 -0.8899 22 6 2.0855 -5.3666 -2.7121 23 7 2.7701 -4.9736 -3.7628 24 14 1.6411 -7.1694 -2.5080 25 1 0.8739 -7.3507 -1.2494 26 1 0.8137 -7.6089 -3.6601 27 1 2.8828 -7.9821 -2.4516 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4264 35 1 3.4451 3.9103 2.8997 36 1 4.1329 2.8208 1.6717 37 1 3.9254 4.5513 1.3102 38 1 2.8466 5.8855 0.2398 39 1 2.1715 6.1439 1.8664 40 1 0.4133 6.3946 -0.6358 41 1 1.6049 8.5160 -0.9303 42 1 2.1951 8.5003 0.7873 43 1 0.2949 7.3457 2.3172 44 1 -1.0922 6.8797 1.2413 45 1 1.5610 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5241 -2.8280 -2.6783 48 1 3.0449 -5.6197 -4.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715870797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:45 Heat of formation + Delta-G solvation = -162.402025 kcal Electronic energy + Delta-G solvation = -30169.660322 eV Core-core repulsion = 25509.541732 eV Total energy + Delta-G solvation = -4660.118590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.81262 -48.17065 -41.16025 -40.36002 -38.93420 -37.98619 -36.41602 -35.81546 -33.28655 -32.09993 -30.28716 -29.10974 -27.62906 -27.17979 -26.90203 -25.64441 -24.01140 -22.36314 -21.03173 -20.91863 -20.09643 -19.83851 -18.41445 -18.09835 -17.87325 -17.56638 -17.29415 -17.21250 -16.79202 -16.56713 -16.44011 -16.07207 -15.68575 -15.52555 -15.18741 -15.03506 -14.95555 -14.48942 -14.30554 -14.28167 -14.17092 -13.87125 -13.77216 -13.47652 -13.45917 -13.33499 -13.17740 -13.03364 -12.90075 -12.61292 -12.55977 -12.39480 -12.28113 -12.11279 -12.07507 -11.83282 -11.80587 -11.46620 -11.36265 -10.79242 -10.33351 -9.99961 -9.66403 -9.29210 -8.46359 -5.94914 1.36723 1.42024 1.56170 1.67050 1.95744 2.04986 2.29785 2.54596 2.82594 2.88133 3.20226 3.26176 3.37815 3.38681 3.42062 3.75234 3.95389 4.10701 4.17705 4.23773 4.33746 4.38935 4.42287 4.47691 4.49819 4.51383 4.55153 4.58643 4.61534 4.68247 4.72924 4.78880 4.82151 4.86280 4.88875 4.96790 5.06982 5.16110 5.31638 5.41768 5.50567 5.83256 6.02555 6.13858 6.45693 6.60908 7.13426 7.22807 7.56499 8.12374 8.71326 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.001565 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.619500 B =17886.852271 C =18157.336970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.529 5.529 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.615 5.615 6 C 0.067 3.933 7 C 0.501 3.499 8 O -0.586 6.586 9 C -0.116 4.116 10 C -0.090 4.090 11 C -0.140 4.140 12 C 0.232 3.768 13 F -0.201 7.201 14 F -0.199 7.199 15 C -0.160 4.160 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.018 0.982 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.023 0.977 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.132 0.868 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 29.205 9.312 31.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.253 5.253 3 C -0.078 4.078 4 C -0.001 4.001 5 N -0.347 5.347 6 C -0.074 4.074 7 C 0.291 3.709 8 O -0.467 6.467 9 C -0.155 4.155 10 C -0.109 4.109 11 C -0.177 4.177 12 C 0.196 3.804 13 F -0.182 7.182 14 F -0.180 7.180 15 C -0.198 4.198 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.499 6.499 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.163 0.837 43 H 0.150 0.850 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.133 0.867 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.297 28.555 10.018 30.722 hybrid contribution -0.881 -0.527 -1.405 1.740 sum 4.416 28.028 8.614 29.652 Atomic orbital electron populations 1.22391 0.87265 1.02046 1.00081 1.61505 1.08471 1.13082 1.42274 1.22444 1.00907 0.86833 0.97602 1.21250 0.99729 0.81749 0.97346 1.47999 1.18065 1.06445 1.62233 1.22174 0.80766 1.04073 1.00407 1.21473 0.84786 0.88515 0.76120 1.90722 1.22144 1.85574 1.48218 1.21706 0.99802 0.88129 1.05895 1.22096 0.96015 0.93982 0.98835 1.24166 0.94023 0.93671 1.05857 1.22589 0.91983 0.84292 0.81494 1.92986 1.96931 1.58549 1.69770 1.92986 1.68984 1.96329 1.59718 1.24288 1.02655 0.91219 1.01600 1.21747 1.02258 0.90302 0.92980 1.20705 0.83756 0.88624 0.83962 1.90463 1.45077 1.81385 1.32965 1.41937 1.50059 1.07069 1.22134 1.19703 1.34309 0.83996 1.08101 0.90273 1.26034 0.96282 1.04336 0.94662 1.69679 1.38192 1.37103 1.11233 0.84865 0.78265 0.76949 0.78214 1.19824 1.19747 1.19501 0.96374 0.92180 0.90687 0.95852 0.88897 0.88693 0.92004 0.90760 0.90336 0.88038 0.84987 0.85117 0.89558 0.87932 0.83711 0.84992 0.90726 0.92159 0.86694 0.77046 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 8.96 127.69 1.14 2.22 16 2 N -0.53 -17.61 4.50 -927.06 -4.17 -21.79 16 3 C 0.05 1.26 5.28 86.30 0.46 1.72 16 4 C 0.12 2.66 5.33 86.38 0.46 3.12 16 5 N -0.61 -9.26 2.87 -846.77 -2.43 -11.69 16 6 C 0.07 0.37 10.24 127.77 1.31 1.68 16 7 C 0.50 8.68 7.67 87.66 0.67 9.35 16 8 O -0.59 -16.38 15.34 -3.03 -0.05 -16.42 16 9 C -0.12 -0.78 4.09 29.85 0.12 -0.66 16 10 C -0.09 -0.98 3.14 -10.20 -0.03 -1.02 16 11 C -0.14 -0.96 7.42 31.12 0.23 -0.73 16 12 C 0.23 3.34 3.28 31.12 0.10 3.44 16 13 F -0.20 -3.34 17.41 44.97 0.78 -2.55 16 14 F -0.20 -4.06 17.38 44.97 0.78 -3.28 16 15 C -0.16 -2.01 7.43 31.18 0.23 -1.78 16 16 C 0.06 2.07 5.45 85.56 0.47 2.54 16 17 C 0.44 21.32 7.47 87.66 0.66 21.97 16 18 O -0.61 -34.08 13.91 -3.07 -0.04 -34.12 16 19 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.84 13.05 21.66 0.28 -49.55 16 24 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 2.57 5.83 -2.39 -0.01 2.55 16 30 H 0.07 2.40 6.47 -2.39 -0.02 2.38 16 31 H 0.02 0.64 8.12 -2.38 -0.02 0.62 16 32 H 0.09 1.91 7.93 -2.39 -0.02 1.90 16 33 H 0.09 1.90 8.07 -2.39 -0.02 1.88 16 34 H 0.06 1.66 5.83 -2.39 -0.01 1.64 16 35 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.08 0.47 8.07 -2.39 -0.02 0.45 16 37 H 0.10 -0.01 6.44 -2.39 -0.02 -0.03 16 38 H 0.13 0.15 7.40 -2.39 -0.02 0.14 16 39 H 0.13 0.10 7.81 -2.38 -0.02 0.08 16 40 H 0.09 1.47 7.68 -2.39 -0.02 1.45 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.14 0.11 8.10 -2.39 -0.02 0.09 16 43 H 0.13 1.02 7.90 -2.39 -0.02 1.00 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 46 H 0.12 3.46 7.93 -2.38 -0.02 3.44 16 47 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -78.49 399.20 2.91 -75.58 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.25 Total: 26.55 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 7.10 Total: 23.47 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -7.94 Total: -114.40 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.09 Total: -50.55 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.56 Total: -5.83 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -78.49 2.91 -75.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715870797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.819 kcal (2) G-P(sol) polarization free energy of solvation -78.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds