Wall clock time and date at job start Wed Apr 1 2020 04:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47321 * 2 1 4 4 C 1.46508 * 119.99959 * 273.65043 * 3 2 1 5 5 C 1.53003 * 109.46862 * 269.99838 * 4 3 2 6 6 N 1.46897 * 109.46818 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99557 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46947 * 180.02562 * 7 6 5 9 9 O 1.21296 * 120.00141 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00041 * 180.02562 * 8 7 6 11 11 C 1.37097 * 119.99569 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00668 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99647 * 179.97438 * 11 10 8 14 14 N 1.31405 * 120.00092 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99837 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46814 * 90.00410 * 15 13 11 17 17 H 1.48500 * 109.47044 * 209.99987 * 15 13 11 18 18 H 1.48502 * 109.47388 * 330.00502 * 15 13 11 19 19 C 1.34769 * 120.00047 * 93.64576 * 3 2 1 20 20 O 1.21287 * 120.00034 * 185.22398 * 19 3 2 21 21 C 1.50696 * 120.00353 * 5.22228 * 19 3 2 22 22 H 1.09004 * 110.43577 * 33.71954 * 21 19 3 23 23 C 1.54268 * 110.59862 * 271.10796 * 21 19 3 24 24 C 1.53875 * 106.59964 * 217.65155 * 23 21 19 25 25 C 1.54464 * 106.68278 * 0.15914 * 24 23 21 26 26 F 1.39905 * 110.40318 * 264.75588 * 25 24 23 27 27 F 1.39898 * 110.65943 * 142.05229 * 25 24 23 28 28 C 1.54887 * 110.49038 * 156.26683 * 21 19 3 29 29 H 1.08994 * 109.47014 * 185.64706 * 1 2 3 30 30 H 1.09006 * 109.46814 * 305.64091 * 1 2 3 31 31 H 1.09001 * 109.47053 * 65.64075 * 1 2 3 32 32 H 1.08999 * 109.46980 * 240.00057 * 2 1 3 33 33 H 1.08996 * 109.47361 * 120.00368 * 2 1 3 34 34 H 1.08996 * 109.47148 * 29.99768 * 4 3 2 35 35 H 1.08997 * 109.47239 * 149.99528 * 4 3 2 36 36 H 1.09003 * 109.46815 * 300.00017 * 5 4 3 37 37 H 1.08995 * 109.46976 * 60.00044 * 5 4 3 38 38 H 1.00904 * 111.00165 * 56.05136 * 6 5 4 39 39 H 1.09003 * 109.47621 * 299.99625 * 7 6 5 40 40 H 1.09001 * 109.47270 * 60.00602 * 7 6 5 41 41 H 0.96994 * 119.99585 * 359.97438 * 10 8 7 42 42 H 0.96999 * 120.00079 * 179.97438 * 14 13 11 43 43 H 1.09001 * 110.03443 * 336.94207 * 23 21 19 44 44 H 1.09002 * 110.03233 * 98.32205 * 23 21 19 45 45 H 1.08999 * 110.03247 * 119.28891 * 24 23 21 46 46 H 1.08999 * 110.03346 * 240.66813 * 24 23 21 47 47 H 1.09005 * 110.75513 * 275.06618 * 28 21 19 48 48 H 1.08993 * 110.75445 * 38.25580 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1864 2.0988 -1.2662 5 6 3.6022 1.8686 -1.7988 6 7 3.7705 2.5876 -3.0687 7 6 5.1214 2.3896 -3.6106 8 6 5.2564 3.1408 -4.9101 9 8 4.3193 3.7780 -5.3425 10 7 6.4182 3.1038 -5.5923 11 6 6.5411 3.7876 -6.7742 12 1 5.7070 4.3556 -7.1588 13 6 7.7390 3.7499 -7.4773 14 7 7.8568 4.4049 -8.6104 15 14 9.1821 2.7680 -6.8118 16 1 9.1189 1.3793 -7.3342 17 1 10.4536 3.4020 -7.2440 18 1 9.1211 2.7420 -5.3283 19 6 2.3130 1.9918 1.1648 20 8 2.6262 3.1635 1.1730 21 6 2.2532 1.2188 2.4570 22 1 2.5489 0.1823 2.2945 23 6 0.8372 1.2871 3.0653 24 6 1.0183 1.3898 4.5900 25 6 2.5396 1.3844 4.8572 26 9 2.9790 0.0887 5.1494 27 9 2.8604 2.2586 5.9012 28 6 3.1583 1.8794 3.5263 29 1 -0.3633 -1.0226 0.1011 30 1 -0.3633 0.5989 0.8352 31 1 -0.3633 0.4239 -0.9362 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.4610 1.7304 -1.9916 35 1 2.0282 3.1648 -1.1035 36 1 4.3276 2.2370 -1.0733 37 1 3.7603 0.8026 -1.9615 38 1 3.5659 3.5695 -2.9582 39 1 5.8571 2.7624 -2.8979 40 1 5.2907 1.3271 -3.7855 41 1 7.1675 2.5939 -5.2467 42 1 8.6931 4.3788 -9.1011 43 1 0.3123 2.1663 2.6916 44 1 0.2792 0.3849 2.8148 45 1 0.5812 2.3187 4.9562 46 1 0.5477 0.5375 5.0801 47 1 4.1878 1.5350 3.4272 48 1 3.1077 2.9660 3.4573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716220871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:40 Heat of formation + Delta-G solvation = -171.792077 kcal Electronic energy + Delta-G solvation = -30530.287755 eV Core-core repulsion = 25869.761982 eV Total energy + Delta-G solvation = -4660.525773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.31251 -47.44795 -40.77037 -38.50746 -37.45707 -36.58958 -35.39600 -33.90094 -31.72015 -31.45066 -30.28123 -29.37452 -28.43042 -26.18984 -24.04167 -23.89378 -22.81044 -21.67174 -21.60525 -19.46160 -19.16786 -18.44475 -18.22029 -17.61776 -17.31089 -16.67621 -16.18367 -16.14571 -15.67508 -15.37118 -15.09989 -14.90533 -14.60559 -14.55592 -14.26426 -13.95755 -13.89771 -13.79635 -13.77437 -13.46613 -13.20657 -12.97212 -12.85511 -12.64847 -12.44205 -12.42109 -12.29062 -12.18252 -11.99415 -11.84246 -11.68664 -11.67160 -11.25250 -11.23936 -11.15711 -11.07257 -10.59742 -10.11586 -9.97697 -9.57484 -9.11071 -8.59837 -8.21884 -8.16759 -6.31103 -3.82512 2.15600 2.47943 3.02627 3.06720 3.14941 3.19127 3.34886 3.55664 3.73554 3.80509 4.09569 4.13984 4.22529 4.34107 4.37466 4.51014 4.59063 4.64790 4.70864 4.76466 4.82960 4.91942 4.97127 5.05650 5.08699 5.15703 5.22581 5.30249 5.31947 5.36665 5.41247 5.41946 5.50799 5.58671 5.70309 5.73410 5.78761 5.83844 5.92284 6.15869 6.97810 7.02517 7.51631 7.58082 7.77351 8.14347 8.59632 8.94837 9.42281 9.82334 10.81992 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.001808 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.791896 B =15483.897739 C =16273.511760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 N -0.607 5.607 4 C 0.115 3.885 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.523 3.477 20 O -0.531 6.531 21 C -0.116 4.116 22 H 0.108 0.892 23 C -0.108 4.108 24 C -0.159 4.159 25 C 0.279 3.721 26 F -0.194 7.194 27 F -0.194 7.194 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -13.590 28.360 34.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.025 4.025 3 N -0.340 5.340 4 C -0.007 4.007 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.083 4.083 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.311 3.689 20 O -0.407 6.407 21 C -0.137 4.137 22 H 0.126 0.874 23 C -0.146 4.146 24 C -0.197 4.197 25 C 0.243 3.757 26 F -0.175 7.175 27 F -0.175 7.175 28 C -0.183 4.183 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.371 -12.967 27.513 33.640 hybrid contribution 1.998 -0.420 1.062 2.301 sum -12.373 -13.388 28.576 33.896 Atomic orbital electron populations 1.22277 0.95427 1.02541 1.03049 1.21709 0.94850 0.82155 1.03744 1.47947 1.65290 1.14602 1.06169 1.21431 0.97121 0.98490 0.83692 1.22259 0.96238 0.99543 0.90405 1.60015 1.26490 1.17793 1.25617 1.21690 0.89790 1.01145 0.95682 1.19688 0.83898 0.86115 0.86738 1.90567 1.38704 1.45445 1.69879 1.42202 1.12061 1.46550 1.22176 1.19435 1.01188 1.26812 0.95927 0.86253 1.25045 0.97715 0.97571 0.95876 1.69618 1.26874 1.41285 1.14319 0.86666 0.82919 0.80780 0.78982 1.19594 1.20173 1.19540 1.20246 0.76607 0.87293 0.84779 1.90738 1.47270 1.16000 1.86649 1.22135 0.97429 1.01132 0.93027 0.87369 1.22089 0.95100 1.04213 0.93171 1.23149 0.92571 1.05986 0.97982 1.21891 0.95333 0.73379 0.85129 1.93021 1.91253 1.38800 1.94456 1.93023 1.94197 1.69098 1.61181 1.23382 1.00305 1.04532 0.90033 0.91228 0.92180 0.91817 0.89728 0.89997 0.89172 0.89526 0.95211 0.91069 0.82771 0.93713 0.89481 0.79691 0.91609 0.89834 0.89480 0.88145 0.88607 0.88573 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.23 37.16 0.38 -0.35 16 2 C 0.10 0.48 6.07 -4.04 -0.02 0.46 16 3 N -0.61 -4.92 2.47 -173.69 -0.43 -5.35 16 4 C 0.12 1.17 5.73 -4.04 -0.02 1.15 16 5 C 0.05 0.54 6.01 -3.82 -0.02 0.52 16 6 N -0.67 -10.30 6.13 -115.06 -0.70 -11.01 16 7 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 8 C 0.45 10.31 7.82 -10.98 -0.09 10.22 16 9 O -0.56 -15.26 15.78 5.54 0.09 -15.17 16 10 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 11 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 12 H 0.12 3.88 7.39 -52.49 -0.39 3.50 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 15 Si 0.88 19.46 27.74 -169.99 -4.71 14.74 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 19 C 0.52 4.90 6.71 -10.99 -0.07 4.82 16 20 O -0.53 -7.14 15.36 5.55 0.09 -7.05 16 21 C -0.12 -0.72 2.45 -90.11 -0.22 -0.94 16 22 H 0.11 0.49 6.20 -51.93 -0.32 0.17 16 23 C -0.11 -0.48 5.55 -25.61 -0.14 -0.62 16 24 C -0.16 -0.75 6.42 -25.51 -0.16 -0.92 16 25 C 0.28 2.01 2.51 -24.97 -0.06 1.95 16 26 F -0.19 -1.61 17.17 2.25 0.04 -1.57 16 27 F -0.19 -1.78 17.17 2.25 0.04 -1.74 16 28 C -0.14 -1.06 5.74 -24.74 -0.14 -1.20 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.25 6.37 -51.93 -0.33 -0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.08 0.27 5.68 -51.93 -0.30 -0.03 16 34 H 0.09 0.85 8.07 -51.93 -0.42 0.44 16 35 H 0.09 1.04 7.36 -51.93 -0.38 0.65 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.35 5.80 8.43 -39.29 -0.33 5.46 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.08 0.44 7.84 -51.93 -0.41 0.03 16 44 H 0.09 0.23 7.30 -51.93 -0.38 -0.15 16 45 H 0.10 0.43 8.11 -51.93 -0.42 0.01 16 46 H 0.10 0.34 8.12 -51.93 -0.42 -0.09 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.12 1.02 7.25 -51.93 -0.38 0.65 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -35.12 395.93 -7.03 -42.14 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.26 Total: 10.27 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.86 Total: 8.09 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.42 Total: -55.68 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.31 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.12 -7.03 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716220871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.647 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds