Wall clock time and date at job start Wed Apr 1 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47321 * 2 1 4 4 C 1.46508 * 119.99959 * 273.65043 * 3 2 1 5 5 C 1.53003 * 109.46862 * 269.99838 * 4 3 2 6 6 N 1.46897 * 109.46818 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99557 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46947 * 180.02562 * 7 6 5 9 9 O 1.21296 * 120.00141 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00041 * 180.02562 * 8 7 6 11 11 C 1.37097 * 119.99569 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00668 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99647 * 179.97438 * 11 10 8 14 14 N 1.31405 * 120.00092 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99837 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46814 * 90.00410 * 15 13 11 17 17 H 1.48500 * 109.47044 * 209.99987 * 15 13 11 18 18 H 1.48502 * 109.47388 * 330.00502 * 15 13 11 19 19 C 1.34769 * 120.00047 * 93.64576 * 3 2 1 20 20 O 1.21287 * 120.00034 * 185.22398 * 19 3 2 21 21 C 1.50696 * 120.00353 * 5.22228 * 19 3 2 22 22 H 1.09004 * 110.43577 * 33.71954 * 21 19 3 23 23 C 1.54268 * 110.59862 * 271.10796 * 21 19 3 24 24 C 1.53875 * 106.59964 * 217.65155 * 23 21 19 25 25 C 1.54464 * 106.68278 * 0.15914 * 24 23 21 26 26 F 1.39905 * 110.40318 * 264.75588 * 25 24 23 27 27 F 1.39898 * 110.65943 * 142.05229 * 25 24 23 28 28 C 1.54887 * 110.49038 * 156.26683 * 21 19 3 29 29 H 1.08994 * 109.47014 * 185.64706 * 1 2 3 30 30 H 1.09006 * 109.46814 * 305.64091 * 1 2 3 31 31 H 1.09001 * 109.47053 * 65.64075 * 1 2 3 32 32 H 1.08999 * 109.46980 * 240.00057 * 2 1 3 33 33 H 1.08996 * 109.47361 * 120.00368 * 2 1 3 34 34 H 1.08996 * 109.47148 * 29.99768 * 4 3 2 35 35 H 1.08997 * 109.47239 * 149.99528 * 4 3 2 36 36 H 1.09003 * 109.46815 * 300.00017 * 5 4 3 37 37 H 1.08995 * 109.46976 * 60.00044 * 5 4 3 38 38 H 1.00904 * 111.00165 * 56.05136 * 6 5 4 39 39 H 1.09003 * 109.47621 * 299.99625 * 7 6 5 40 40 H 1.09001 * 109.47270 * 60.00602 * 7 6 5 41 41 H 0.96994 * 119.99585 * 359.97438 * 10 8 7 42 42 H 0.96999 * 120.00079 * 179.97438 * 14 13 11 43 43 H 1.09001 * 110.03443 * 336.94207 * 23 21 19 44 44 H 1.09002 * 110.03233 * 98.32205 * 23 21 19 45 45 H 1.08999 * 110.03247 * 119.28891 * 24 23 21 46 46 H 1.08999 * 110.03346 * 240.66813 * 24 23 21 47 47 H 1.09005 * 110.75513 * 275.06618 * 28 21 19 48 48 H 1.08993 * 110.75445 * 38.25580 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1864 2.0988 -1.2662 5 6 3.6022 1.8686 -1.7988 6 7 3.7705 2.5876 -3.0687 7 6 5.1214 2.3896 -3.6106 8 6 5.2564 3.1408 -4.9101 9 8 4.3193 3.7780 -5.3425 10 7 6.4182 3.1038 -5.5923 11 6 6.5411 3.7876 -6.7742 12 1 5.7070 4.3556 -7.1588 13 6 7.7390 3.7499 -7.4773 14 7 7.8568 4.4049 -8.6104 15 14 9.1821 2.7680 -6.8118 16 1 9.1189 1.3793 -7.3342 17 1 10.4536 3.4020 -7.2440 18 1 9.1211 2.7420 -5.3283 19 6 2.3130 1.9918 1.1648 20 8 2.6262 3.1635 1.1730 21 6 2.2532 1.2188 2.4570 22 1 2.5489 0.1823 2.2945 23 6 0.8372 1.2871 3.0653 24 6 1.0183 1.3898 4.5900 25 6 2.5396 1.3844 4.8572 26 9 2.9790 0.0887 5.1494 27 9 2.8604 2.2586 5.9012 28 6 3.1583 1.8794 3.5263 29 1 -0.3633 -1.0226 0.1011 30 1 -0.3633 0.5989 0.8352 31 1 -0.3633 0.4239 -0.9362 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.4610 1.7304 -1.9916 35 1 2.0282 3.1648 -1.1035 36 1 4.3276 2.2370 -1.0733 37 1 3.7603 0.8026 -1.9615 38 1 3.5659 3.5695 -2.9582 39 1 5.8571 2.7624 -2.8979 40 1 5.2907 1.3271 -3.7855 41 1 7.1675 2.5939 -5.2467 42 1 8.6931 4.3788 -9.1011 43 1 0.3123 2.1663 2.6916 44 1 0.2792 0.3849 2.8148 45 1 0.5812 2.3187 4.9562 46 1 0.5477 0.5375 5.0801 47 1 4.1878 1.5350 3.4272 48 1 3.1077 2.9660 3.4573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716220871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:37 Heat of formation + Delta-G solvation = -197.766577 kcal Electronic energy + Delta-G solvation = -30531.414094 eV Core-core repulsion = 25869.761982 eV Total energy + Delta-G solvation = -4661.652112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.91578 -48.06641 -41.44497 -40.32467 -38.11759 -37.35120 -36.53140 -35.84783 -33.77249 -32.21382 -30.83548 -30.04806 -29.21733 -27.61692 -25.56700 -24.34806 -23.76950 -22.36943 -22.10726 -21.32575 -20.34782 -19.75718 -18.92330 -18.23205 -17.92059 -17.81674 -17.29154 -17.14258 -16.76371 -16.65237 -16.04518 -15.75682 -15.62529 -15.39336 -15.17701 -15.11560 -14.80973 -14.70717 -14.52185 -14.40016 -14.33071 -14.22482 -13.89467 -13.59030 -13.43451 -13.32119 -13.16587 -12.99554 -12.81529 -12.73618 -12.60472 -12.42819 -12.34567 -12.06494 -12.00830 -11.99128 -11.74738 -11.59501 -11.52947 -10.82484 -10.49951 -10.26735 -9.77716 -9.44929 -8.42589 -6.03782 1.29498 1.34729 1.43751 1.46793 1.81603 1.92523 2.21981 2.65740 2.74729 2.86166 3.05315 3.13161 3.30178 3.44923 3.67544 3.93399 3.94539 3.97905 4.03062 4.09808 4.14564 4.20590 4.25142 4.33172 4.38704 4.42459 4.48871 4.54517 4.57189 4.66619 4.79298 4.84644 4.88279 4.91945 4.98195 5.00352 5.06612 5.08279 5.44770 5.47722 5.52913 5.85276 5.97865 6.24249 6.35381 6.57560 6.85914 7.08736 7.37231 7.93405 8.74965 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.001808 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.791896 B =15483.897739 C =16273.511760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 N -0.602 5.602 4 C 0.120 3.880 5 C 0.056 3.944 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.590 5.590 11 C -0.330 4.330 12 H 0.055 0.945 13 C -0.016 4.016 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.233 1.233 19 C 0.520 3.480 20 O -0.581 6.581 21 C -0.108 4.108 22 H 0.134 0.866 23 C -0.103 4.103 24 C -0.152 4.152 25 C 0.274 3.726 26 F -0.199 7.199 27 F -0.209 7.209 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.023 0.977 37 H 0.092 0.908 38 H 0.343 0.657 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 -17.449 30.901 37.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 N -0.333 5.333 4 C -0.003 4.003 5 C -0.074 4.074 6 N -0.312 5.312 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.231 5.231 11 C -0.459 4.459 12 H 0.074 0.926 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.156 1.156 19 C 0.309 3.691 20 O -0.461 6.461 21 C -0.129 4.129 22 H 0.152 0.848 23 C -0.141 4.141 24 C -0.190 4.190 25 C 0.238 3.762 26 F -0.180 7.180 27 F -0.190 7.190 28 C -0.186 4.186 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.111 0.889 38 H 0.161 0.839 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.133 0.867 47 H 0.114 0.886 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.797 -16.880 30.082 37.151 hybrid contribution 1.692 0.846 0.231 1.906 sum -12.105 -16.034 30.313 36.366 Atomic orbital electron populations 1.22265 0.94763 1.03711 1.02331 1.22012 0.95384 0.80180 1.05346 1.48027 1.64606 1.15716 1.04973 1.21228 0.96585 0.97566 0.84930 1.22267 0.96761 0.99975 0.88418 1.60044 1.25864 1.17513 1.27828 1.21622 0.91229 1.01799 0.92227 1.20942 0.82536 0.84882 0.88086 1.90546 1.40362 1.47351 1.71559 1.42022 1.13352 1.46705 1.21065 1.19012 1.00256 1.28194 0.98454 0.92648 1.26141 1.01170 0.98470 0.95677 1.69801 1.28333 1.43057 1.16170 0.85351 0.76912 0.78840 0.80321 1.17885 1.20016 1.15642 1.20807 0.75557 0.86857 0.85915 1.90722 1.49617 1.18323 1.87399 1.22161 0.98368 1.01536 0.90818 0.84790 1.22127 0.94038 1.05245 0.92653 1.23166 0.90524 1.07056 0.98289 1.22135 0.96945 0.72812 0.84341 1.93008 1.91503 1.39011 1.94458 1.92991 1.94467 1.69679 1.61884 1.23345 1.00828 1.03480 0.90920 0.89199 0.92063 0.93322 0.88999 0.87534 0.88405 0.92029 0.95910 0.88942 0.83922 0.91176 0.86217 0.77441 0.91096 0.90775 0.86599 0.87930 0.86651 0.88621 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.23 71.98 0.74 -0.18 16 2 C 0.09 0.59 6.07 86.38 0.52 1.11 16 3 N -0.60 -8.62 2.47 -821.81 -2.03 -10.65 16 4 C 0.12 2.35 5.73 86.38 0.49 2.85 16 5 C 0.06 1.20 6.01 86.30 0.52 1.72 16 6 N -0.68 -20.27 6.13 -517.93 -3.17 -23.44 16 7 C 0.06 1.97 6.17 85.56 0.53 2.50 16 8 C 0.45 20.50 7.82 87.66 0.69 21.19 16 9 O -0.61 -34.52 15.78 -3.08 -0.05 -34.57 16 10 N -0.59 -28.11 5.09 -306.97 -1.56 -29.67 16 11 C -0.33 -19.53 10.16 84.04 0.85 -18.67 16 12 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 13 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 14 N -0.93 -56.57 13.96 21.66 0.30 -56.27 16 15 Si 0.97 38.92 27.74 68.60 1.90 40.82 16 16 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 18 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 19 C 0.52 9.15 6.71 87.66 0.59 9.74 16 20 O -0.58 -15.98 15.36 -3.05 -0.05 -16.03 16 21 C -0.11 -1.10 2.45 -10.47 -0.03 -1.13 16 22 H 0.13 0.68 6.20 -2.38 -0.01 0.66 16 23 C -0.10 -0.65 5.55 31.32 0.17 -0.47 16 24 C -0.15 -1.09 6.42 31.39 0.20 -0.89 16 25 C 0.27 3.59 2.51 31.74 0.08 3.66 16 26 F -0.20 -2.88 17.17 44.97 0.77 -2.11 16 27 F -0.21 -3.76 17.17 44.97 0.77 -2.99 16 28 C -0.15 -2.06 5.74 31.88 0.18 -1.88 16 29 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.06 0.32 6.37 -2.38 -0.02 0.31 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.51 8.10 -2.39 -0.02 0.49 16 33 H 0.11 0.18 5.68 -2.39 -0.01 0.17 16 34 H 0.10 1.75 8.07 -2.39 -0.02 1.73 16 35 H 0.06 1.53 7.36 -2.39 -0.02 1.51 16 36 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.34 11.40 8.43 -89.69 -0.76 10.65 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.39 15.33 5.76 -92.71 -0.53 14.79 16 42 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.07 0.65 7.84 -2.39 -0.02 0.63 16 44 H 0.12 0.09 7.30 -2.39 -0.02 0.07 16 45 H 0.10 0.72 8.11 -2.39 -0.02 0.70 16 46 H 0.12 0.41 8.12 -2.39 -0.02 0.39 16 47 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.10 1.78 7.25 -2.39 -0.02 1.76 16 Total: -1.00 -83.66 395.93 2.55 -81.12 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.35 Total: 34.67 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 6.01 Total: 19.13 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.47 Total: -120.03 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.10 Total: -50.60 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 1.54 Total: -5.10 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.82 kcal Total: -83.66 2.55 -81.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716220871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.649 kcal (2) G-P(sol) polarization free energy of solvation -83.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds