Wall clock time and date at job start Wed Apr 1 2020 04:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.46945 * 2 1 4 4 C 1.46497 * 119.99966 * 87.96593 * 3 2 1 5 5 C 1.53008 * 109.47153 * 89.99645 * 4 3 2 6 6 N 1.46895 * 109.47275 * 180.02562 * 5 4 3 7 7 C 1.46895 * 111.00288 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47668 * 179.97438 * 7 6 5 9 9 O 1.21294 * 119.99860 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00545 * 179.97438 * 8 7 6 11 11 C 1.37094 * 120.00108 * 179.72504 * 10 8 7 12 12 H 1.07994 * 120.00421 * 0.27322 * 11 10 8 13 13 C 1.38955 * 119.99813 * 180.27640 * 11 10 8 14 14 N 1.31411 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99738 * 179.97438 * 13 11 10 16 16 H 1.48489 * 109.47270 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46868 * 120.00270 * 15 13 11 18 18 H 1.48497 * 109.46967 * 239.99954 * 15 13 11 19 19 C 1.34777 * 119.99843 * 267.96344 * 3 2 1 20 20 O 1.21277 * 119.99654 * 185.07505 * 19 3 2 21 21 C 1.50698 * 120.00155 * 5.07917 * 19 3 2 22 22 H 1.08994 * 110.01920 * 24.68618 * 21 19 3 23 23 C 1.53870 * 110.03107 * 146.08283 * 21 19 3 24 24 C 1.54272 * 106.59685 * 119.28317 * 23 21 19 25 25 C 1.54890 * 104.19852 * 23.61007 * 24 23 21 26 26 F 1.39892 * 110.75868 * 80.37005 * 25 24 23 27 27 F 1.39892 * 110.75305 * 203.74230 * 25 24 23 28 28 C 1.54272 * 110.03082 * 263.24609 * 21 19 3 29 29 H 1.08995 * 109.47013 * 59.99943 * 1 2 3 30 30 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46738 * 300.00122 * 1 2 3 32 32 H 1.09004 * 109.46595 * 240.00403 * 2 1 3 33 33 H 1.08995 * 109.47013 * 120.00057 * 2 1 3 34 34 H 1.08998 * 109.47336 * 329.99860 * 4 3 2 35 35 H 1.08996 * 109.47182 * 209.99473 * 4 3 2 36 36 H 1.08998 * 109.46825 * 59.99901 * 5 4 3 37 37 H 1.08996 * 109.46936 * 299.99979 * 5 4 3 38 38 H 1.00902 * 111.00270 * 56.04841 * 6 5 4 39 39 H 1.09007 * 109.46938 * 59.99528 * 7 6 5 40 40 H 1.09006 * 109.47132 * 300.00325 * 7 6 5 41 41 H 0.96999 * 119.99586 * 0.02562 * 10 8 7 42 42 H 0.97004 * 120.00175 * 180.02562 * 14 13 11 43 43 H 1.08999 * 110.03006 * 238.56056 * 23 21 19 44 44 H 1.09001 * 110.03671 * 0.02562 * 23 21 19 45 45 H 1.09007 * 110.48189 * 142.28534 * 24 23 21 46 46 H 1.09001 * 110.48543 * 264.92815 * 24 23 21 47 47 H 1.09006 * 110.48679 * 335.78911 * 28 21 19 48 48 H 1.09004 * 110.48529 * 98.42596 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2201 2.0868 1.2679 5 6 3.6495 1.8519 1.7606 6 7 3.8515 2.5589 3.0322 7 6 5.2163 2.3561 3.5363 8 6 5.3859 3.0950 4.8387 9 8 4.4609 3.7287 5.3013 10 7 6.5653 3.0518 5.4895 11 6 6.7212 3.7286 6.6714 12 1 5.8977 4.2929 7.0833 13 6 7.9390 3.6887 7.3395 14 7 8.9414 3.0025 6.8381 15 14 8.1517 4.6116 8.9497 16 1 6.8832 5.3013 9.2961 17 1 8.5033 3.6522 10.0273 18 1 9.2376 5.6141 8.8058 19 6 2.2821 2.0027 -1.1665 20 8 2.7727 3.1118 -1.1652 21 6 1.9672 1.3196 -2.4723 22 1 1.1756 0.5844 -2.3274 23 6 1.5352 2.3598 -3.5206 24 6 2.5526 2.2690 -4.6767 25 6 3.1336 0.8380 -4.5600 26 9 2.2645 -0.0981 -5.1306 27 9 4.3991 0.7669 -5.1521 28 6 3.2321 0.6330 -3.0280 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5142 1.7116 2.0088 35 1 2.0578 3.1544 1.1194 36 1 4.3554 2.2271 1.0196 37 1 3.8117 0.7844 1.9091 38 1 3.1670 2.2746 3.7168 39 1 5.9329 2.7355 2.8077 40 1 5.3901 1.2920 3.6965 41 1 7.3051 2.5453 5.1194 42 1 9.7914 2.9743 7.3046 43 1 0.5343 2.1289 -3.8852 44 1 1.5537 3.3588 -3.0850 45 1 2.0524 2.4006 -5.6362 46 1 3.3402 3.0120 -4.5510 47 1 4.1295 1.1117 -2.6359 48 1 3.2278 -0.4294 -2.7841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716220872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:47 Heat of formation + Delta-G solvation = -178.942816 kcal Electronic energy + Delta-G solvation = -30564.793528 eV Core-core repulsion = 25903.957676 eV Total energy + Delta-G solvation = -4660.835853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.26240 -47.42694 -40.73994 -38.31986 -37.40998 -36.43873 -35.32195 -33.84066 -31.54389 -31.16436 -30.26392 -29.13361 -28.40286 -26.05210 -24.12629 -23.95568 -22.67112 -21.75585 -21.42905 -19.37991 -19.08273 -18.27590 -17.88241 -17.47204 -17.32872 -16.61217 -16.24127 -16.06950 -15.59331 -15.40904 -14.88604 -14.63109 -14.53701 -14.41826 -14.32209 -14.09497 -13.80157 -13.74635 -13.52634 -13.40320 -13.31861 -13.10770 -12.92421 -12.51282 -12.34913 -12.17493 -12.05803 -12.02631 -11.87342 -11.60801 -11.53763 -11.50056 -11.27033 -11.13554 -11.12383 -10.98751 -10.33861 -10.22179 -10.04117 -9.51604 -9.05864 -8.45775 -8.08030 -7.95603 -6.41265 -3.82031 2.20081 2.54183 3.16844 3.22377 3.27359 3.34840 3.35743 3.68187 3.83596 3.91172 4.12643 4.20500 4.37923 4.42373 4.47417 4.59994 4.66722 4.73114 4.75860 4.82770 4.90879 4.93267 5.04475 5.12822 5.17223 5.25635 5.27098 5.30712 5.34500 5.38582 5.42760 5.55050 5.61011 5.71942 5.74637 5.84529 5.92017 5.99516 6.20730 6.28778 7.02843 7.16866 7.55997 7.63289 7.84662 8.06989 8.61661 9.18385 9.54746 10.06069 10.76569 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.001770 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.526396 B =15817.427015 C =16586.136711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.117 3.883 5 C 0.048 3.952 6 N -0.665 5.665 7 C 0.053 3.947 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.520 3.480 20 O -0.522 6.522 21 C -0.115 4.115 22 H 0.105 0.895 23 C -0.111 4.111 24 C -0.155 4.155 25 C 0.279 3.721 26 F -0.192 7.192 27 F -0.193 7.193 28 C -0.146 4.146 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.348 0.652 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.711 -10.702 -23.401 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.343 5.343 4 C -0.005 4.005 5 C -0.083 4.083 6 N -0.298 5.298 7 C -0.079 4.079 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.307 3.693 20 O -0.398 6.398 21 C -0.136 4.136 22 H 0.123 0.877 23 C -0.148 4.148 24 C -0.193 4.193 25 C 0.242 3.758 26 F -0.173 7.173 27 F -0.174 7.174 28 C -0.184 4.184 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.167 0.833 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.722 -9.121 -23.317 29.564 hybrid contribution 0.752 -1.181 0.797 1.611 sum -14.971 -10.302 -22.520 28.938 Atomic orbital electron populations 1.22250 0.95499 1.02602 1.02882 1.21661 0.94771 0.82319 1.03579 1.47980 1.65721 1.14402 1.06157 1.21431 0.96235 0.99105 0.83747 1.22262 0.97323 0.95586 0.93137 1.59921 1.04127 1.60663 1.05106 1.21654 0.91184 0.98173 0.96931 1.19789 0.84389 0.86465 0.86696 1.90522 1.40832 1.46409 1.68938 1.41869 1.11429 1.45476 1.21294 1.19758 0.98581 1.26764 0.97686 0.87838 1.25277 0.95116 0.97710 0.99944 1.69623 1.03231 1.41408 1.40066 0.85790 0.78510 0.78982 0.81004 1.19203 1.20795 1.20727 1.20364 0.77979 0.86007 0.84940 1.90759 1.42287 1.19752 1.86956 1.21951 0.98768 0.99104 0.93788 0.87680 1.22088 0.98676 1.00581 0.93493 1.23315 1.01034 0.93799 1.01194 1.21930 0.74332 0.89355 0.90152 1.93010 1.69525 1.68016 1.86733 1.93021 1.41369 1.97023 1.85973 1.23232 0.99820 1.03468 0.91919 0.92280 0.91222 0.91823 0.90230 0.89833 0.90403 0.88648 0.90700 0.95691 0.83272 0.89561 0.93919 0.77459 0.91926 0.90084 0.88530 0.88797 0.87796 0.87519 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.05 37.16 0.37 -0.42 16 2 C 0.10 0.54 5.70 -4.04 -0.02 0.52 16 3 N -0.61 -5.26 2.47 -173.68 -0.43 -5.69 16 4 C 0.12 1.26 5.64 -4.04 -0.02 1.24 16 5 C 0.05 0.60 6.01 -3.82 -0.02 0.58 16 6 N -0.67 -10.91 6.12 -115.06 -0.70 -11.62 16 7 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 8 C 0.44 10.59 7.82 -10.99 -0.09 10.50 16 9 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 10 N -0.56 -14.50 5.29 -10.97 -0.06 -14.56 16 11 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 12 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 15 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 C 0.52 5.14 6.51 -10.99 -0.07 5.07 16 20 O -0.52 -7.33 15.48 5.56 0.09 -7.25 16 21 C -0.11 -0.77 2.40 -90.65 -0.22 -0.98 16 22 H 0.11 0.50 5.57 -51.93 -0.29 0.21 16 23 C -0.11 -0.71 6.31 -25.61 -0.16 -0.87 16 24 C -0.16 -1.00 6.43 -25.07 -0.16 -1.16 16 25 C 0.28 2.14 2.51 -24.74 -0.06 2.08 16 26 F -0.19 -1.61 17.21 2.25 0.04 -1.57 16 27 F -0.19 -1.86 17.21 2.25 0.04 -1.82 16 28 C -0.15 -0.98 5.77 -25.07 -0.14 -1.13 16 29 H 0.06 0.27 7.28 -51.93 -0.38 -0.11 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.31 6.17 -51.93 -0.32 -0.01 16 33 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.10 1.26 7.50 -51.93 -0.39 0.87 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.35 5.63 8.43 -39.29 -0.33 5.30 16 39 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.78 6.92 -51.93 -0.36 0.42 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.11 0.83 7.85 -51.93 -0.41 0.43 16 48 H 0.10 0.50 7.90 -51.93 -0.41 0.09 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -34.05 400.42 -7.44 -41.49 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.36 Total: 10.50 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -0.87 Total: 8.26 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.47 Total: -55.89 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.05 -7.44 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716220872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.454 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds