Wall clock time and date at job start Wed Apr 1 2020 04:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.46945 * 2 1 4 4 C 1.46497 * 119.99966 * 87.96593 * 3 2 1 5 5 C 1.53008 * 109.47153 * 89.99645 * 4 3 2 6 6 N 1.46895 * 109.47275 * 180.02562 * 5 4 3 7 7 C 1.46895 * 111.00288 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47668 * 179.97438 * 7 6 5 9 9 O 1.21294 * 119.99860 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00545 * 179.97438 * 8 7 6 11 11 C 1.37094 * 120.00108 * 179.72504 * 10 8 7 12 12 H 1.07994 * 120.00421 * 0.27322 * 11 10 8 13 13 C 1.38955 * 119.99813 * 180.27640 * 11 10 8 14 14 N 1.31411 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99738 * 179.97438 * 13 11 10 16 16 H 1.48489 * 109.47270 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46868 * 120.00270 * 15 13 11 18 18 H 1.48497 * 109.46967 * 239.99954 * 15 13 11 19 19 C 1.34777 * 119.99843 * 267.96344 * 3 2 1 20 20 O 1.21277 * 119.99654 * 185.07505 * 19 3 2 21 21 C 1.50698 * 120.00155 * 5.07917 * 19 3 2 22 22 H 1.08994 * 110.01920 * 24.68618 * 21 19 3 23 23 C 1.53870 * 110.03107 * 146.08283 * 21 19 3 24 24 C 1.54272 * 106.59685 * 119.28317 * 23 21 19 25 25 C 1.54890 * 104.19852 * 23.61007 * 24 23 21 26 26 F 1.39892 * 110.75868 * 80.37005 * 25 24 23 27 27 F 1.39892 * 110.75305 * 203.74230 * 25 24 23 28 28 C 1.54272 * 110.03082 * 263.24609 * 21 19 3 29 29 H 1.08995 * 109.47013 * 59.99943 * 1 2 3 30 30 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46738 * 300.00122 * 1 2 3 32 32 H 1.09004 * 109.46595 * 240.00403 * 2 1 3 33 33 H 1.08995 * 109.47013 * 120.00057 * 2 1 3 34 34 H 1.08998 * 109.47336 * 329.99860 * 4 3 2 35 35 H 1.08996 * 109.47182 * 209.99473 * 4 3 2 36 36 H 1.08998 * 109.46825 * 59.99901 * 5 4 3 37 37 H 1.08996 * 109.46936 * 299.99979 * 5 4 3 38 38 H 1.00902 * 111.00270 * 56.04841 * 6 5 4 39 39 H 1.09007 * 109.46938 * 59.99528 * 7 6 5 40 40 H 1.09006 * 109.47132 * 300.00325 * 7 6 5 41 41 H 0.96999 * 119.99586 * 0.02562 * 10 8 7 42 42 H 0.97004 * 120.00175 * 180.02562 * 14 13 11 43 43 H 1.08999 * 110.03006 * 238.56056 * 23 21 19 44 44 H 1.09001 * 110.03671 * 0.02562 * 23 21 19 45 45 H 1.09007 * 110.48189 * 142.28534 * 24 23 21 46 46 H 1.09001 * 110.48543 * 264.92815 * 24 23 21 47 47 H 1.09006 * 110.48679 * 335.78911 * 28 21 19 48 48 H 1.09004 * 110.48529 * 98.42596 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2201 2.0868 1.2679 5 6 3.6495 1.8519 1.7606 6 7 3.8515 2.5589 3.0322 7 6 5.2163 2.3561 3.5363 8 6 5.3859 3.0950 4.8387 9 8 4.4609 3.7287 5.3013 10 7 6.5653 3.0518 5.4895 11 6 6.7212 3.7286 6.6714 12 1 5.8977 4.2929 7.0833 13 6 7.9390 3.6887 7.3395 14 7 8.9414 3.0025 6.8381 15 14 8.1517 4.6116 8.9497 16 1 6.8832 5.3013 9.2961 17 1 8.5033 3.6522 10.0273 18 1 9.2376 5.6141 8.8058 19 6 2.2821 2.0027 -1.1665 20 8 2.7727 3.1118 -1.1652 21 6 1.9672 1.3196 -2.4723 22 1 1.1756 0.5844 -2.3274 23 6 1.5352 2.3598 -3.5206 24 6 2.5526 2.2690 -4.6767 25 6 3.1336 0.8380 -4.5600 26 9 2.2645 -0.0981 -5.1306 27 9 4.3991 0.7669 -5.1521 28 6 3.2321 0.6330 -3.0280 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5142 1.7116 2.0088 35 1 2.0578 3.1544 1.1194 36 1 4.3554 2.2271 1.0196 37 1 3.8117 0.7844 1.9091 38 1 3.1670 2.2746 3.7168 39 1 5.9329 2.7355 2.8077 40 1 5.3901 1.2920 3.6965 41 1 7.3051 2.5453 5.1194 42 1 9.7914 2.9743 7.3046 43 1 0.5343 2.1289 -3.8852 44 1 1.5537 3.3588 -3.0850 45 1 2.0524 2.4006 -5.6362 46 1 3.3402 3.0120 -4.5510 47 1 4.1295 1.1117 -2.6359 48 1 3.2278 -0.4294 -2.7841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716220872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:45 Heat of formation + Delta-G solvation = -202.627383 kcal Electronic energy + Delta-G solvation = -30565.820568 eV Core-core repulsion = 25903.957676 eV Total energy + Delta-G solvation = -4661.862892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.90073 -48.07727 -41.46700 -40.18283 -38.15440 -37.25434 -36.53559 -35.80969 -33.30620 -32.24095 -30.85861 -29.92129 -29.19813 -27.58392 -25.73817 -24.45650 -23.70551 -22.34747 -22.13901 -21.13047 -19.98312 -19.79839 -18.90594 -18.14255 -17.94404 -17.88688 -17.29197 -17.09047 -16.72440 -16.50619 -16.12732 -15.88565 -15.66800 -15.32120 -15.27223 -15.06345 -14.88653 -14.73012 -14.49459 -14.40241 -14.05597 -13.90294 -13.80086 -13.50496 -13.49835 -13.31153 -13.12165 -12.93223 -12.75976 -12.72521 -12.56297 -12.42044 -12.39899 -12.12021 -12.08431 -11.98230 -11.76405 -11.69980 -11.53156 -10.82481 -10.41192 -10.03798 -9.77905 -9.38816 -8.48373 -5.97372 1.35854 1.41260 1.46065 1.55804 1.82863 2.01925 2.28636 2.64142 2.80498 2.95731 3.11685 3.18615 3.28710 3.53682 3.63279 3.90647 3.98412 4.03186 4.07598 4.11872 4.18169 4.23706 4.27945 4.30691 4.38032 4.42660 4.45727 4.53594 4.56279 4.60618 4.77648 4.84160 4.85317 4.90835 4.98830 5.00653 5.05484 5.10213 5.39706 5.40659 5.50844 5.83027 6.04831 6.32811 6.40186 6.57581 7.10422 7.10927 7.53327 8.08305 8.69265 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.001770 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.526396 B =15817.427015 C =16586.136711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 N -0.604 5.604 4 C 0.124 3.876 5 C 0.057 3.943 6 N -0.683 5.683 7 C 0.068 3.932 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.516 3.484 20 O -0.573 6.573 21 C -0.106 4.106 22 H 0.133 0.867 23 C -0.110 4.110 24 C -0.154 4.154 25 C 0.275 3.725 26 F -0.193 7.193 27 F -0.207 7.207 28 C -0.143 4.143 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.349 0.651 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 -12.700 -23.949 31.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.028 4.028 3 N -0.336 5.336 4 C 0.000 4.000 5 C -0.073 4.073 6 N -0.316 5.316 7 C -0.064 4.064 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.197 1.197 19 C 0.305 3.695 20 O -0.452 6.452 21 C -0.127 4.127 22 H 0.151 0.849 23 C -0.148 4.148 24 C -0.192 4.192 25 C 0.239 3.761 26 F -0.174 7.174 27 F -0.188 7.188 28 C -0.181 4.181 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.168 0.832 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.450 -11.175 -23.889 31.083 hybrid contribution 0.946 -0.581 0.926 1.445 sum -15.504 -11.756 -22.963 30.098 Atomic orbital electron populations 1.22229 0.94624 1.03651 1.02432 1.21964 0.95465 0.80287 1.05116 1.48070 1.65006 1.15570 1.04994 1.21225 0.95563 0.97947 0.85264 1.22212 0.98038 0.96325 0.90743 1.59868 1.03196 1.62266 1.06318 1.21488 0.92588 0.98753 0.93601 1.20818 0.83122 0.85600 0.87955 1.90489 1.41940 1.48021 1.70423 1.41938 1.12235 1.45705 1.21106 1.19715 0.98749 1.28414 0.99443 0.90254 1.26081 0.94340 0.98099 1.02892 1.69680 1.03586 1.41649 1.41210 0.84843 0.78225 0.77990 0.77106 1.19755 1.19410 1.19687 1.20948 0.76956 0.85468 0.86149 1.90740 1.44642 1.22108 1.87716 1.21977 0.99518 0.99394 0.91830 0.84879 1.22097 0.99849 0.99546 0.93270 1.23321 1.00911 0.92945 1.02039 1.22087 0.73765 0.89771 0.90503 1.93004 1.69459 1.68133 1.86833 1.92992 1.42408 1.97104 1.86273 1.23222 0.99157 1.04674 0.91082 0.92142 0.89374 0.92943 0.88112 0.88950 0.88400 0.91662 0.92492 0.93255 0.83165 0.88632 0.91073 0.76968 0.91257 0.87814 0.90535 0.87345 0.88702 0.88974 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.05 71.99 0.72 -0.32 16 2 C 0.09 0.72 5.70 86.38 0.49 1.21 16 3 N -0.60 -9.55 2.47 -821.81 -2.03 -11.58 16 4 C 0.12 2.57 5.64 86.38 0.49 3.06 16 5 C 0.06 1.38 6.01 86.31 0.52 1.90 16 6 N -0.68 -22.08 6.12 -517.94 -3.17 -25.25 16 7 C 0.07 2.41 6.17 85.56 0.53 2.94 16 8 C 0.44 21.28 7.82 87.66 0.69 21.96 16 9 O -0.62 -35.09 15.78 -3.07 -0.05 -35.14 16 10 N -0.57 -29.92 5.29 -306.99 -1.62 -31.54 16 11 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 12 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 15 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 C 0.52 9.86 6.51 87.66 0.57 10.43 16 20 O -0.57 -16.69 15.48 -3.02 -0.05 -16.73 16 21 C -0.11 -1.22 2.40 -10.82 -0.03 -1.25 16 22 H 0.13 0.78 5.57 -2.39 -0.01 0.77 16 23 C -0.11 -1.28 6.31 31.32 0.20 -1.09 16 24 C -0.15 -1.86 6.43 31.67 0.20 -1.66 16 25 C 0.27 3.84 2.51 31.88 0.08 3.92 16 26 F -0.19 -2.81 17.21 44.97 0.77 -2.04 16 27 F -0.21 -3.85 17.21 44.97 0.77 -3.08 16 28 C -0.14 -1.68 5.77 31.67 0.18 -1.49 16 29 H 0.06 0.37 7.28 -2.39 -0.02 0.35 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.10 0.39 6.17 -2.38 -0.01 0.37 16 33 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 34 H 0.10 1.64 8.07 -2.39 -0.02 1.62 16 35 H 0.06 1.78 7.50 -2.39 -0.02 1.76 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.35 11.13 8.43 -89.69 -0.76 10.37 16 39 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 40 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 42 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 1.25 6.92 -2.39 -0.02 1.24 16 45 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 1.39 7.85 -2.38 -0.02 1.38 16 48 H 0.12 0.85 7.90 -2.38 -0.02 0.83 16 Total: -1.00 -75.80 400.42 2.37 -73.43 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.49 Total: 35.51 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 5.92 Total: 20.91 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -6.54 Total: -118.19 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.10 Total: -51.87 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 1.55 Total: -5.12 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -75.80 2.37 -73.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716220872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.200 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds