Wall clock time and date at job start Wed Apr 1 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 H 1.08998 * 115.55111 * 34.55719 * 5 3 2 7 7 C 1.53009 * 117.49751 * 248.88484 * 5 3 2 8 8 C 1.52996 * 59.99988 * 252.50896 * 7 5 3 9 9 H 1.09007 * 117.49961 * 107.48856 * 8 7 5 10 10 C 1.50694 * 117.50158 * 252.50993 * 8 7 5 11 11 C 1.34666 * 126.59210 * 33.31166 * 10 8 7 12 12 N 1.34131 * 108.02382 * 179.87446 * 11 10 8 13 13 C 1.30505 * 109.25282 * 0.40225 * 12 11 10 14 14 N 1.35042 * 108.69831 * 359.74565 * 13 12 11 15 15 H 0.97000 * 126.39256 * 179.97438 * 14 13 12 16 16 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 17 17 C 1.53939 * 113.73308 * 36.72573 * 16 2 1 18 18 N 1.47955 * 86.18522 * 221.92313 * 17 16 2 19 19 C 1.46898 * 111.00111 * 137.58353 * 18 17 16 20 20 C 1.50699 * 109.47161 * 70.64281 * 19 18 17 21 21 O 1.21295 * 119.99785 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99854 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99801 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99756 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00111 * 179.97438 * 23 22 20 26 26 N 1.31415 * 119.99423 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00087 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47230 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.46998 * 120.00468 * 27 25 23 30 30 H 1.48504 * 109.47090 * 240.00532 * 27 25 23 31 31 C 1.47966 * 90.76262 * 24.69122 * 18 17 16 32 32 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 33 33 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 34 34 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 35 35 H 1.08992 * 117.49639 * 0.02562 * 7 5 3 36 36 H 1.09000 * 117.49411 * 144.99422 * 7 5 3 37 37 H 1.07999 * 125.99084 * 0.02562 * 11 10 8 38 38 H 1.07998 * 125.64623 * 179.73744 * 13 12 11 39 39 H 1.09000 * 112.94466 * 168.43458 * 16 2 1 40 40 H 1.09000 * 113.76036 * 336.24445 * 17 16 2 41 41 H 1.09004 * 113.75407 * 107.60289 * 17 16 2 42 42 H 1.09005 * 109.47181 * 190.64467 * 19 18 17 43 43 H 1.08999 * 109.46825 * 310.63815 * 19 18 17 44 44 H 0.96993 * 120.00108 * 359.97438 * 22 20 19 45 45 H 0.97003 * 119.99225 * 179.97438 * 26 25 23 46 46 H 1.08999 * 113.75950 * 220.99806 * 31 18 17 47 47 H 1.08992 * 113.76130 * 89.62420 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 1 0.4467 2.4758 0.5475 7 6 1.4610 3.3255 -1.2742 8 6 2.2075 3.7627 -0.0124 9 1 3.2934 3.6676 -0.0116 10 6 1.6575 4.9416 0.7482 11 6 0.3604 5.2802 0.8760 12 7 0.2929 6.3877 1.6297 13 6 1.4995 6.7531 1.9666 14 7 2.3808 5.8775 1.4372 15 1 3.3461 5.9068 1.5277 16 6 2.1975 -1.2687 0.0006 17 6 1.5291 -2.3704 -0.8416 18 7 1.8707 -3.2880 0.2676 19 6 0.7553 -4.1979 0.5606 20 6 0.6093 -5.1917 -0.5629 21 8 1.3609 -5.1466 -1.5138 22 7 -0.3563 -6.1304 -0.5109 23 6 -0.4895 -7.0342 -1.5332 24 1 0.1792 -6.9935 -2.3804 25 6 -1.4847 -8.0023 -1.4795 26 7 -2.2986 -8.0513 -0.4489 27 14 -1.6666 -9.2332 -2.8727 28 1 -0.6352 -8.9660 -3.9070 29 1 -1.4911 -10.6095 -2.3433 30 1 -3.0177 -9.1030 -3.4751 31 6 1.8970 -2.1571 1.2214 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 2.0553 2.9426 -2.1038 36 1 0.5718 3.8902 -1.5545 37 1 -0.4786 4.7511 0.4488 38 1 1.7515 7.6134 2.5690 39 1 3.2616 -1.1451 -0.2007 40 1 0.4573 -2.2282 -0.9797 41 1 2.0534 -2.5911 -1.7715 42 1 0.9543 -4.7287 1.4916 43 1 -0.1657 -3.6235 0.6596 44 1 -0.9571 -6.1666 0.2497 45 1 -2.9936 -8.7270 -0.4115 46 1 2.7151 -2.2074 1.9398 47 1 0.9328 -1.9525 1.6866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716743462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:47 Heat of formation + Delta-G solvation = 65.979496 kcal Electronic energy + Delta-G solvation = -29391.048272 eV Core-core repulsion = 25191.522234 eV Total energy + Delta-G solvation = -4199.526038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -42.50773 -40.87347 -39.53465 -37.81543 -36.79350 -35.13838 -33.91049 -32.91486 -31.32766 -30.22263 -29.58042 -27.25530 -26.21898 -25.90669 -24.75663 -23.75992 -23.01013 -22.03857 -20.89606 -19.91834 -19.31946 -18.94011 -18.64492 -17.93355 -17.36024 -16.73944 -16.16680 -15.90519 -15.36805 -15.28156 -15.10019 -14.83282 -14.56589 -14.47753 -14.01090 -13.91974 -13.86060 -13.51157 -13.15542 -13.08620 -12.90918 -12.59090 -12.44975 -12.36692 -12.08736 -11.81527 -11.54175 -11.44079 -11.15931 -11.08156 -11.00295 -10.63427 -10.42073 -10.40108 -10.36466 -10.25101 -10.06407 -9.54505 -8.84329 -8.75610 -8.67206 -8.28661 -7.99567 -6.44843 -3.85651 1.46636 2.20484 2.50518 2.69338 2.78359 3.14179 3.25156 3.32380 3.53404 3.85034 3.92848 4.05115 4.19185 4.24391 4.28634 4.37135 4.46839 4.56960 4.63297 4.74407 4.86137 4.92362 4.94676 5.08329 5.16031 5.19311 5.24407 5.27884 5.40291 5.40902 5.48697 5.53439 5.63384 5.70693 5.75582 5.85640 5.92859 6.13077 6.21231 6.27035 6.30499 6.54546 6.91376 7.06995 7.16458 7.52647 7.62482 7.90556 8.02710 8.57875 9.15005 9.50570 10.02076 10.72930 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.001681 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.035906 B =16656.479716 C =16974.902521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.546 3.454 4 O -0.540 6.540 5 C -0.174 4.174 6 H 0.131 0.869 7 C -0.129 4.129 8 C -0.057 4.057 9 H 0.125 0.875 10 C 0.011 3.989 11 C -0.023 4.023 12 N -0.492 5.492 13 C 0.184 3.816 14 N -0.564 5.564 15 H 0.421 0.579 16 C 0.113 3.887 17 C 0.014 3.986 18 N -0.448 5.448 19 C 0.014 3.986 20 C 0.443 3.557 21 O -0.578 6.578 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 C -0.014 4.014 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.169 0.831 38 H 0.209 0.791 39 H 0.128 0.872 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.093 0.907 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.601 27.147 5.542 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.331 5.331 3 C 0.334 3.666 4 O -0.417 6.417 5 C -0.196 4.196 6 H 0.149 0.851 7 C -0.167 4.167 8 C -0.077 4.077 9 H 0.143 0.857 10 C -0.104 4.104 11 C -0.171 4.171 12 N -0.211 5.211 13 C -0.099 4.099 14 N -0.167 5.167 15 H 0.259 0.741 16 C 0.009 3.991 17 C -0.116 4.116 18 N -0.171 5.171 19 C -0.119 4.119 20 C 0.228 3.772 21 O -0.462 6.462 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 C -0.144 4.144 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.186 0.814 38 H 0.226 0.774 39 H 0.146 0.854 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.361 26.976 5.108 27.974 hybrid contribution -0.375 -0.817 0.011 0.899 sum 4.985 26.160 5.119 27.118 Atomic orbital electron populations 1.21880 0.79240 1.03335 1.02628 1.47816 1.07099 1.05590 1.72635 1.19583 0.87252 0.84264 0.75539 1.90697 1.13784 1.87225 1.50001 1.22464 1.02060 0.89710 1.05347 0.85096 1.23157 1.02823 1.00042 0.90645 1.20131 0.99047 0.89304 0.99222 0.85697 1.20300 0.92301 0.94852 1.02994 1.22049 0.94793 0.96878 1.03359 1.70310 1.22401 1.13426 1.14971 1.25008 0.84461 0.97816 1.02636 1.43205 1.10741 1.22174 1.40579 0.74099 1.23281 0.98786 0.80560 0.96455 1.24254 0.99973 0.89520 0.97813 1.68369 1.37103 1.08527 1.03116 1.22447 0.93074 0.96467 0.99867 1.19660 0.84237 0.84661 0.88655 1.90531 1.45480 1.74654 1.35499 1.41869 1.29023 1.27614 1.21560 1.19754 1.14888 1.07720 1.00457 0.87856 1.25264 0.95885 0.98629 0.98167 1.69623 1.19164 1.35821 1.29691 0.85797 0.78192 0.79747 0.80606 1.19214 1.20725 1.20761 1.24510 1.02009 0.91143 0.96703 0.91744 0.90810 0.90578 0.87287 0.86956 0.81418 0.77421 0.85387 0.90991 0.88122 0.88983 0.92916 0.77517 0.91914 0.88820 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 8.86 59.84 0.53 1.08 16 2 N -0.60 -6.30 3.09 -175.27 -0.54 -6.84 16 3 C 0.55 6.03 7.46 -10.98 -0.08 5.95 16 4 O -0.54 -7.84 15.75 5.55 0.09 -7.76 16 5 C -0.17 -1.32 4.81 -91.77 -0.44 -1.76 16 6 H 0.13 0.79 6.29 -51.93 -0.33 0.46 16 7 C -0.13 -0.81 9.75 -26.73 -0.26 -1.07 16 8 C -0.06 -0.42 5.84 -91.78 -0.54 -0.95 16 9 H 0.13 1.02 7.67 -51.92 -0.40 0.62 16 10 C 0.01 0.09 6.92 -81.60 -0.56 -0.48 16 11 C -0.02 -0.19 10.94 -17.81 -0.19 -0.39 16 12 N -0.49 -4.79 11.25 -14.67 -0.17 -4.96 16 13 C 0.18 1.20 13.04 -90.37 -1.18 0.02 16 14 N -0.56 -3.25 6.15 -10.30 -0.06 -3.31 16 15 H 0.42 1.21 8.96 -40.82 -0.37 0.84 16 16 C 0.11 1.44 4.39 -69.61 -0.31 1.13 16 17 C 0.01 0.21 6.17 -2.77 -0.02 0.19 16 18 N -0.45 -7.35 5.95 -239.86 -1.43 -8.77 16 19 C 0.01 0.24 5.31 -4.98 -0.03 0.21 16 20 C 0.44 10.30 7.59 -10.99 -0.08 10.22 16 21 O -0.58 -15.50 15.13 5.54 0.08 -15.42 16 22 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 23 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 27 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 31 C -0.01 -0.17 7.50 -2.76 -0.02 -0.19 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 34 H 0.08 0.41 6.00 -51.93 -0.31 0.10 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.53 7.94 -51.93 -0.41 0.12 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.13 1.83 7.24 -51.93 -0.38 1.45 16 40 H 0.07 1.03 6.35 -51.93 -0.33 0.70 16 41 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 44 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.07 0.77 6.62 -51.93 -0.34 0.43 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -36.13 391.55 -10.29 -46.42 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.38 Total: 10.49 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -3.42 Total: 6.06 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -1.53 Total: -61.54 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.17 Total: -23.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.13 -10.29 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716743462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.399 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds