Wall clock time and date at job start Wed Apr 1 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 H 1.08998 * 115.55111 * 34.55719 * 5 3 2 7 7 C 1.53009 * 117.49751 * 248.88484 * 5 3 2 8 8 C 1.52996 * 59.99988 * 252.50896 * 7 5 3 9 9 H 1.09007 * 117.49961 * 107.48856 * 8 7 5 10 10 C 1.50694 * 117.50158 * 252.50993 * 8 7 5 11 11 C 1.34666 * 126.59210 * 33.31166 * 10 8 7 12 12 N 1.34131 * 108.02382 * 179.87446 * 11 10 8 13 13 C 1.30505 * 109.25282 * 0.40225 * 12 11 10 14 14 N 1.35042 * 108.69831 * 359.74565 * 13 12 11 15 15 H 0.97000 * 126.39256 * 179.97438 * 14 13 12 16 16 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 17 17 C 1.53939 * 113.73308 * 36.72573 * 16 2 1 18 18 N 1.47955 * 86.18522 * 221.92313 * 17 16 2 19 19 C 1.46898 * 111.00111 * 137.58353 * 18 17 16 20 20 C 1.50699 * 109.47161 * 70.64281 * 19 18 17 21 21 O 1.21295 * 119.99785 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99854 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99801 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99756 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00111 * 179.97438 * 23 22 20 26 26 N 1.31415 * 119.99423 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00087 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47230 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.46998 * 120.00468 * 27 25 23 30 30 H 1.48504 * 109.47090 * 240.00532 * 27 25 23 31 31 C 1.47966 * 90.76262 * 24.69122 * 18 17 16 32 32 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 33 33 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 34 34 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 35 35 H 1.08992 * 117.49639 * 0.02562 * 7 5 3 36 36 H 1.09000 * 117.49411 * 144.99422 * 7 5 3 37 37 H 1.07999 * 125.99084 * 0.02562 * 11 10 8 38 38 H 1.07998 * 125.64623 * 179.73744 * 13 12 11 39 39 H 1.09000 * 112.94466 * 168.43458 * 16 2 1 40 40 H 1.09000 * 113.76036 * 336.24445 * 17 16 2 41 41 H 1.09004 * 113.75407 * 107.60289 * 17 16 2 42 42 H 1.09005 * 109.47181 * 190.64467 * 19 18 17 43 43 H 1.08999 * 109.46825 * 310.63815 * 19 18 17 44 44 H 0.96993 * 120.00108 * 359.97438 * 22 20 19 45 45 H 0.97003 * 119.99225 * 179.97438 * 26 25 23 46 46 H 1.08999 * 113.75950 * 220.99806 * 31 18 17 47 47 H 1.08992 * 113.76130 * 89.62420 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 1 0.4467 2.4758 0.5475 7 6 1.4610 3.3255 -1.2742 8 6 2.2075 3.7627 -0.0124 9 1 3.2934 3.6676 -0.0116 10 6 1.6575 4.9416 0.7482 11 6 0.3604 5.2802 0.8760 12 7 0.2929 6.3877 1.6297 13 6 1.4995 6.7531 1.9666 14 7 2.3808 5.8775 1.4372 15 1 3.3461 5.9068 1.5277 16 6 2.1975 -1.2687 0.0006 17 6 1.5291 -2.3704 -0.8416 18 7 1.8707 -3.2880 0.2676 19 6 0.7553 -4.1979 0.5606 20 6 0.6093 -5.1917 -0.5629 21 8 1.3609 -5.1466 -1.5138 22 7 -0.3563 -6.1304 -0.5109 23 6 -0.4895 -7.0342 -1.5332 24 1 0.1792 -6.9935 -2.3804 25 6 -1.4847 -8.0023 -1.4795 26 7 -2.2986 -8.0513 -0.4489 27 14 -1.6666 -9.2332 -2.8727 28 1 -0.6352 -8.9660 -3.9070 29 1 -1.4911 -10.6095 -2.3433 30 1 -3.0177 -9.1030 -3.4751 31 6 1.8970 -2.1571 1.2214 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 2.0553 2.9426 -2.1038 36 1 0.5718 3.8902 -1.5545 37 1 -0.4786 4.7511 0.4488 38 1 1.7515 7.6134 2.5690 39 1 3.2616 -1.1451 -0.2007 40 1 0.4573 -2.2282 -0.9797 41 1 2.0534 -2.5911 -1.7715 42 1 0.9543 -4.7287 1.4916 43 1 -0.1657 -3.6235 0.6596 44 1 -0.9571 -6.1666 0.2497 45 1 -2.9936 -8.7270 -0.4115 46 1 2.7151 -2.2074 1.9398 47 1 0.9328 -1.9525 1.6866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716743462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:39 Heat of formation + Delta-G solvation = 38.639658 kcal Electronic energy + Delta-G solvation = -29392.233817 eV Core-core repulsion = 25191.522234 eV Total energy + Delta-G solvation = -4200.711582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.01565 -41.88986 -40.62688 -39.49617 -37.52036 -36.17478 -35.82156 -33.43027 -33.31051 -31.49322 -30.18861 -28.07995 -27.52952 -27.05331 -26.14665 -24.40494 -24.08317 -22.54040 -21.53162 -21.08529 -20.72188 -19.98701 -19.77734 -19.21402 -18.17136 -17.82668 -17.67836 -16.94043 -16.56350 -16.29999 -16.12860 -15.88175 -15.67769 -15.52961 -15.29900 -15.02621 -14.84169 -14.40693 -14.22044 -14.04737 -13.73243 -13.61100 -13.58186 -13.52215 -13.22287 -13.08965 -12.92242 -12.85995 -12.41555 -12.18616 -12.12940 -11.98621 -11.81831 -11.67228 -11.51244 -10.98546 -10.93558 -10.92624 -10.35290 -10.02028 -9.78293 -9.72519 -9.21509 -8.47511 -5.95905 0.94924 1.35940 1.41176 1.41803 1.55485 1.76524 2.03859 2.17557 2.23983 2.29118 2.81784 2.94357 3.19083 3.24090 3.36944 3.51052 3.66427 3.70723 3.76383 3.91341 4.03061 4.08345 4.11207 4.20272 4.24093 4.35936 4.39996 4.46024 4.52068 4.59422 4.61123 4.70143 4.76536 4.78621 4.85809 4.96661 4.98775 5.04847 5.30691 5.33021 5.38995 5.41641 5.75776 5.84349 6.04225 6.31326 6.53932 6.59540 7.06009 7.12421 7.12459 7.55233 8.11212 8.69988 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.001681 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.035906 B =16656.479716 C =16974.902521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.597 5.597 3 C 0.541 3.459 4 O -0.582 6.582 5 C -0.172 4.172 6 H 0.153 0.847 7 C -0.115 4.115 8 C -0.057 4.057 9 H 0.113 0.887 10 C 0.005 3.995 11 C -0.038 4.038 12 N -0.537 5.537 13 C 0.191 3.809 14 N -0.559 5.559 15 H 0.433 0.567 16 C 0.125 3.875 17 C 0.015 3.985 18 N -0.479 5.479 19 C 0.027 3.973 20 C 0.440 3.560 21 O -0.619 6.619 22 N -0.572 5.572 23 C -0.333 4.333 24 H 0.077 0.923 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.991 3.009 28 H -0.275 1.275 29 H -0.272 1.272 30 H -0.269 1.269 31 C 0.001 3.999 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.180 0.820 38 H 0.243 0.757 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.101 0.899 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 28.478 6.634 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.328 5.328 3 C 0.331 3.669 4 O -0.463 6.463 5 C -0.193 4.193 6 H 0.171 0.829 7 C -0.153 4.153 8 C -0.077 4.077 9 H 0.131 0.869 10 C -0.111 4.111 11 C -0.185 4.185 12 N -0.256 5.256 13 C -0.093 4.093 14 N -0.163 5.163 15 H 0.274 0.726 16 C 0.020 3.980 17 C -0.115 4.115 18 N -0.203 5.203 19 C -0.105 4.105 20 C 0.227 3.773 21 O -0.505 6.505 22 N -0.210 5.210 23 C -0.462 4.462 24 H 0.095 0.905 25 C -0.211 4.211 26 N -0.560 5.560 27 Si 0.815 3.185 28 H -0.200 1.200 29 H -0.197 1.197 30 H -0.194 1.194 31 C -0.128 4.128 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.197 0.803 38 H 0.259 0.741 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.988 28.316 6.227 29.266 hybrid contribution 0.107 -1.172 -0.322 1.220 sum 4.095 27.145 5.906 28.080 Atomic orbital electron populations 1.22139 0.77128 1.04894 1.03536 1.47857 1.08292 1.04576 1.72087 1.20181 0.86947 0.85328 0.74480 1.90679 1.15781 1.87867 1.51946 1.22436 1.02360 0.87778 1.06726 0.82936 1.23236 1.03186 0.99025 0.89854 1.20036 0.98420 0.89220 1.00030 0.86927 1.20281 0.92296 0.95139 1.03366 1.22323 0.95556 0.97011 1.03634 1.70299 1.24203 1.14560 1.16565 1.25694 0.83804 0.98128 1.01692 1.43242 1.11487 1.21618 1.39923 0.72622 1.22864 0.97728 0.81411 0.95997 1.24168 1.00304 0.90426 0.96610 1.68335 1.37094 1.10024 1.04814 1.22340 0.95017 0.95618 0.97500 1.20731 0.82568 0.84585 0.89418 1.90506 1.46682 1.75682 1.37675 1.41919 1.29825 1.27934 1.21285 1.19674 1.15715 1.09770 1.01060 0.90500 1.25999 0.95068 0.99659 1.00380 1.69673 1.19268 1.36365 1.30664 0.84893 0.78253 0.77668 0.77658 1.19990 1.19707 1.19448 1.24518 1.03611 0.88665 0.96016 0.91220 0.90538 0.87740 0.87925 0.84851 0.80327 0.74087 0.87516 0.89989 0.91389 0.87211 0.89788 0.76933 0.91290 0.88111 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 8.86 127.77 1.13 1.95 16 2 N -0.60 -11.72 3.09 -826.80 -2.56 -14.28 16 3 C 0.54 11.49 7.46 87.66 0.65 12.14 16 4 O -0.58 -17.15 15.75 -3.04 -0.05 -17.19 16 5 C -0.17 -2.29 4.81 -11.54 -0.06 -2.34 16 6 H 0.15 1.35 6.29 -2.39 -0.02 1.34 16 7 C -0.12 -1.25 9.75 30.60 0.30 -0.95 16 8 C -0.06 -0.77 5.84 -11.54 -0.07 -0.83 16 9 H 0.11 1.82 7.67 -2.38 -0.02 1.80 16 10 C 0.01 0.07 6.92 40.95 0.28 0.36 16 11 C -0.04 -0.58 10.94 83.52 0.91 0.33 16 12 N -0.54 -9.66 11.25 -200.31 -2.25 -11.91 16 13 C 0.19 2.10 13.04 180.26 2.35 4.45 16 14 N -0.56 -5.49 6.15 -186.50 -1.15 -6.64 16 15 H 0.43 1.81 8.96 -92.71 -0.83 0.98 16 16 C 0.12 3.13 4.39 46.56 0.20 3.34 16 17 C 0.01 0.44 6.17 86.41 0.53 0.97 16 18 N -0.48 -15.37 5.95 -912.78 -5.43 -20.80 16 19 C 0.03 0.89 5.31 85.56 0.45 1.35 16 20 C 0.44 20.64 7.59 87.66 0.67 21.31 16 21 O -0.62 -34.31 15.13 -3.08 -0.05 -34.35 16 22 N -0.57 -28.87 5.29 -306.98 -1.62 -30.49 16 23 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 24 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 25 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 26 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 27 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 30 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 31 C 0.00 0.03 7.50 86.41 0.65 0.67 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.95 6.36 -2.39 -0.02 0.94 16 34 H 0.10 0.73 6.00 -2.39 -0.01 0.72 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.13 0.91 7.94 -2.39 -0.02 0.89 16 37 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 38 H 0.24 0.56 8.06 -2.91 -0.02 0.54 16 39 H 0.11 3.17 7.24 -2.39 -0.02 3.15 16 40 H 0.08 2.27 6.35 -2.39 -0.02 2.26 16 41 H 0.07 2.48 8.09 -2.38 -0.02 2.46 16 42 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 43 H 0.08 2.27 7.69 -2.39 -0.02 2.25 16 44 H 0.40 18.85 7.90 -92.71 -0.73 18.11 16 45 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 46 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.10 1.75 6.62 -2.39 -0.02 1.74 16 Total: -1.00 -80.65 391.55 -2.02 -82.67 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.53 Total: 32.17 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 9.29 Total: 24.67 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -12.72 Total: -132.63 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.09 Total: -51.55 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -80.65 -2.02 -82.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716743462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.312 kcal (2) G-P(sol) polarization free energy of solvation -80.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds