Wall clock time and date at job start Wed Apr 1 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36434 * 125.49288 * 2 1 4 4 C 1.34582 * 108.56473 * 179.97438 * 3 2 1 5 5 C 1.41927 * 107.33199 * 0.02562 * 4 3 2 6 6 C 1.48050 * 126.47988 * 180.02562 * 5 4 3 7 7 C 1.36684 * 126.59157 * 0.02562 * 6 5 4 8 8 C 1.41223 * 105.43659 * 179.97438 * 7 6 5 9 9 C 1.47743 * 126.34354 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99662 * 353.71097 * 9 8 7 11 11 N 1.34775 * 119.99741 * 173.70321 * 9 8 7 12 12 C 1.46493 * 120.00232 * 3.90715 * 11 9 8 13 13 C 1.53001 * 109.47271 * 83.43061 * 12 11 9 14 14 O 1.42898 * 109.47182 * 65.00050 * 13 12 11 15 15 C 1.46508 * 119.99641 * 183.90087 * 11 9 8 16 16 C 1.52993 * 109.46883 * 90.00471 * 15 11 9 17 17 N 1.46503 * 109.46988 * 180.02562 * 16 15 11 18 18 C 1.36941 * 119.99926 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99989 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99614 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00347 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47263 * 89.99301 * 22 20 18 24 24 H 1.48498 * 109.47054 * 209.99910 * 22 20 18 25 25 H 1.48506 * 109.46870 * 329.99918 * 22 20 18 26 26 N 1.31815 * 107.31597 * 359.97438 * 8 7 6 27 27 N 1.28449 * 110.44251 * 0.02562 * 26 8 7 28 28 H 0.96992 * 125.00916 * 179.97438 * 27 26 8 29 29 C 1.36162 * 125.49117 * 180.29291 * 2 1 3 30 30 H 1.08993 * 109.47338 * 90.01998 * 1 2 3 31 31 H 1.09001 * 109.46643 * 210.01935 * 1 2 3 32 32 H 1.08999 * 109.46586 * 330.01533 * 1 2 3 33 33 H 1.07999 * 125.72112 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.33672 * 179.97438 * 4 3 2 35 35 H 1.08008 * 127.28268 * 0.24096 * 7 6 5 36 36 H 1.09005 * 109.47106 * 203.43463 * 12 11 9 37 37 H 1.08998 * 109.47444 * 323.42737 * 12 11 9 38 38 H 1.09008 * 109.46750 * 185.00001 * 13 12 11 39 39 H 1.09001 * 109.47170 * 304.99424 * 13 12 11 40 40 H 0.96700 * 114.00126 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.46808 * 210.00741 * 15 11 9 42 42 H 1.09004 * 109.46963 * 329.99992 * 15 11 9 43 43 H 1.09003 * 109.46974 * 299.99770 * 16 15 11 44 44 H 1.08999 * 109.47255 * 59.99981 * 16 15 11 45 45 H 0.96995 * 119.99904 * 359.97438 * 17 16 15 46 46 H 0.96998 * 120.00395 * 180.02562 * 21 20 18 47 47 H 1.07993 * 125.97986 * 0.05066 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1108 0.0000 4 6 3.5446 0.7190 0.0006 5 6 3.5546 -0.7003 0.0003 6 6 4.7512 -1.5721 0.0013 7 6 6.0560 -1.1649 0.0031 8 6 6.8204 -2.3524 0.0040 9 6 8.2949 -2.4445 0.0054 10 8 8.9669 -1.4379 -0.1094 11 7 8.8950 -3.6444 0.1342 12 6 8.0873 -4.8654 0.1866 13 6 7.7477 -5.3139 -1.2362 14 8 8.9478 -5.6834 -1.9183 15 6 10.3551 -3.7275 0.2216 16 6 10.7839 -3.6422 1.6877 17 7 12.2440 -3.7248 1.7751 18 6 12.8610 -3.6701 2.9964 19 1 12.2713 -3.5658 3.8950 20 6 14.2444 -3.7489 3.0791 21 7 14.9630 -3.8766 1.9838 22 14 15.0862 -3.6736 4.7450 23 1 15.2235 -5.0470 5.2927 24 1 16.4320 -3.0646 4.5924 25 1 14.2722 -2.8493 5.6741 26 7 5.9746 -3.3634 0.0033 27 7 4.7636 -2.9352 0.0016 28 1 3.9741 -3.4987 0.0004 29 6 2.2555 -1.1086 -0.0057 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3632 -0.8898 0.5141 32 1 -0.3632 0.8901 0.5136 33 1 1.9093 2.1333 0.0004 34 1 4.4102 1.3649 0.0003 35 1 6.4245 -0.1496 0.0077 36 1 8.6494 -5.6515 0.6910 37 1 7.1662 -4.6685 0.7351 38 1 7.0741 -6.1699 -1.1963 39 1 7.2640 -4.4954 -1.7694 40 1 8.8078 -5.9794 -2.8282 41 1 10.6909 -4.6746 -0.2008 42 1 10.7999 -2.9031 -0.3358 43 1 10.4480 -2.6951 2.1100 44 1 10.3390 -4.4667 2.2449 45 1 12.7735 -3.8189 0.9679 46 1 15.9297 -3.9320 2.0417 47 1 1.9123 -2.1326 -0.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717051956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:40 Heat of formation + Delta-G solvation = 73.346037 kcal Electronic energy + Delta-G solvation = -29652.598910 eV Core-core repulsion = 25453.392309 eV Total energy + Delta-G solvation = -4199.206601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.71107 -41.44157 -39.36826 -36.97248 -35.41346 -34.23479 -33.86683 -32.15812 -31.25405 -30.94273 -29.29755 -28.87865 -27.36173 -26.66159 -24.46428 -23.17547 -22.62246 -22.32862 -21.21642 -20.65537 -20.24148 -18.72335 -18.36710 -17.63129 -17.03618 -16.86759 -16.36981 -15.98075 -15.75782 -15.53414 -14.79117 -14.63067 -14.45435 -14.15272 -13.88192 -13.74727 -13.47788 -13.38883 -13.25339 -13.06294 -13.03899 -12.95477 -12.85285 -12.53230 -12.41901 -12.27992 -11.46670 -11.04680 -10.82251 -10.79639 -10.61422 -10.45268 -10.16510 -10.02569 -9.96238 -9.74135 -9.57451 -9.40530 -8.84087 -8.72924 -8.26733 -8.12543 -6.77353 -5.62113 -2.90439 1.19558 1.71388 2.01658 2.38066 2.62980 3.02128 3.27013 3.53856 3.58259 3.60674 3.61193 4.13541 4.27985 4.38257 4.41162 4.52755 4.59876 4.68336 4.73917 4.78650 4.84220 5.12213 5.27908 5.33629 5.43208 5.47381 5.56738 5.68348 5.69494 5.75310 5.90806 5.96770 5.99579 6.13072 6.25836 6.34726 6.39272 6.41077 6.63367 6.75020 6.80331 6.87374 6.96767 7.14444 7.63557 7.71129 7.82862 7.83721 8.47493 8.56818 9.67215 10.25508 10.61111 11.60934 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.002053 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.229011 B =13632.853229 C =14813.389338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.447 5.447 3 C -0.012 4.012 4 C -0.166 4.166 5 C -0.106 4.106 6 C 0.099 3.901 7 C -0.166 4.166 8 C 0.003 3.997 9 C 0.594 3.406 10 O -0.525 6.525 11 N -0.585 5.585 12 C 0.106 3.894 13 C 0.069 3.931 14 O -0.567 6.567 15 C 0.113 3.887 16 C 0.142 3.858 17 N -0.729 5.729 18 C -0.234 4.234 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 N -0.262 5.262 27 N -0.391 5.391 28 H 0.440 0.560 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.373 0.627 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.022 0.978 44 H 0.017 0.983 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.953 3.312 -9.093 38.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.122 5.122 3 C -0.141 4.141 4 C -0.191 4.191 5 C -0.115 4.115 6 C -0.026 4.026 7 C -0.194 4.194 8 C -0.157 4.157 9 C 0.379 3.621 10 O -0.399 6.399 11 N -0.317 5.317 12 C -0.018 4.018 13 C -0.010 4.010 14 O -0.371 6.371 15 C -0.009 4.009 16 C 0.014 3.986 17 N -0.374 5.374 18 C -0.365 4.365 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 N -0.097 5.097 27 N -0.104 5.104 28 H 0.284 0.716 29 C -0.136 4.136 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.219 0.781 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.040 0.960 44 H 0.035 0.965 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -36.641 2.912 -8.390 37.702 hybrid contribution -0.204 0.257 0.130 0.353 sum -36.845 3.169 -8.261 37.893 Atomic orbital electron populations 1.22073 0.76807 1.04614 1.03446 1.43860 1.06407 1.05958 1.56025 1.21816 0.90148 0.91585 1.10505 1.20897 0.96468 0.93271 1.08484 1.17280 0.88882 0.92848 1.12498 1.19166 0.93852 0.83081 1.06524 1.21602 0.89807 0.99686 1.08293 1.21918 0.94198 0.90606 1.08956 1.17014 0.84305 0.83616 0.77147 1.90821 1.64073 1.35228 1.49785 1.47619 1.07691 1.05384 1.71013 1.21955 0.97301 0.86957 0.95563 1.22578 0.86489 0.97927 0.94015 1.86589 1.32372 1.88284 1.29899 1.21729 0.77137 1.03603 0.98472 1.20936 0.86654 0.97983 0.93076 1.42207 0.99648 1.88717 1.06821 1.19226 0.89772 1.41769 0.85769 0.91239 1.24738 0.96203 1.03221 0.97018 1.69667 1.05109 1.57506 1.25953 0.86166 0.78936 0.77444 0.83531 1.21836 1.21800 1.20816 1.73624 0.89683 1.25961 1.20475 1.43555 1.06822 1.05294 1.54754 0.71586 1.21709 0.89638 0.91653 1.10592 0.90724 0.89764 0.89543 0.81554 0.83641 0.81975 0.89640 0.86965 0.93292 0.93627 0.78096 0.89643 0.89811 0.96042 0.96508 0.78206 0.93603 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.10 11.10 59.85 0.66 0.77 16 2 N -0.45 -2.34 3.14 -124.26 -0.39 -2.73 16 3 C -0.01 -0.07 11.40 -16.80 -0.19 -0.26 16 4 C -0.17 -1.37 10.65 -39.46 -0.42 -1.79 16 5 C -0.11 -0.92 6.12 -105.20 -0.64 -1.56 16 6 C 0.10 1.01 7.13 -82.41 -0.59 0.43 16 7 C -0.17 -2.18 10.58 -39.01 -0.41 -2.59 16 8 C 0.00 0.05 6.60 -82.86 -0.55 -0.50 16 9 C 0.59 10.80 7.63 -12.38 -0.09 10.70 16 10 O -0.53 -11.42 16.48 5.31 0.09 -11.33 16 11 N -0.59 -10.11 2.44 -174.84 -0.43 -10.54 16 12 C 0.11 1.45 5.37 -4.04 -0.02 1.43 16 13 C 0.07 0.80 6.80 37.16 0.25 1.06 16 14 O -0.57 -7.37 13.30 -35.23 -0.47 -7.84 16 15 C 0.11 2.27 5.52 -4.04 -0.02 2.25 16 16 C 0.14 3.32 6.58 -4.04 -0.03 3.30 16 17 N -0.73 -20.41 5.60 -59.91 -0.34 -20.75 16 18 C -0.23 -7.07 9.99 -15.06 -0.15 -7.22 16 19 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.75 13.06 55.49 0.72 -29.02 16 22 Si 0.91 23.63 29.55 -169.99 -5.02 18.60 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 26 N -0.26 -3.03 7.57 33.37 0.25 -2.78 16 27 N -0.39 -3.40 6.90 33.32 0.23 -3.17 16 28 H 0.44 2.06 8.96 -190.46 -1.71 0.35 16 29 C 0.00 -0.02 11.40 -16.37 -0.19 -0.21 16 30 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.16 2.08 8.06 -52.48 -0.42 1.65 16 36 H 0.09 1.20 8.02 -51.93 -0.42 0.78 16 37 H 0.11 1.40 5.37 -51.93 -0.28 1.13 16 38 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.05 0.55 7.19 -51.93 -0.37 0.18 16 40 H 0.37 3.11 9.12 45.56 0.42 3.53 16 41 H 0.09 1.69 7.76 -51.93 -0.40 1.29 16 42 H 0.08 1.83 7.37 -51.93 -0.38 1.45 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 11.16 7.67 -40.82 -0.31 10.85 16 46 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -40.16 400.40 -9.03 -49.20 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.23 Total: 9.12 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.48 Total: 5.21 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: 0.06 Total: -68.98 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.38 Total: -19.17 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -40.16 -9.03 -49.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717051956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.542 kcal (2) G-P(sol) polarization free energy of solvation -40.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds