Wall clock time and date at job start Wed Apr 1 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36434 * 125.49288 * 2 1 4 4 C 1.34582 * 108.56473 * 179.97438 * 3 2 1 5 5 C 1.41927 * 107.33199 * 0.02562 * 4 3 2 6 6 C 1.48050 * 126.47988 * 180.02562 * 5 4 3 7 7 C 1.36684 * 126.59157 * 0.02562 * 6 5 4 8 8 C 1.41223 * 105.43659 * 179.97438 * 7 6 5 9 9 C 1.47743 * 126.34354 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99662 * 353.71097 * 9 8 7 11 11 N 1.34775 * 119.99741 * 173.70321 * 9 8 7 12 12 C 1.46493 * 120.00232 * 3.90715 * 11 9 8 13 13 C 1.53001 * 109.47271 * 83.43061 * 12 11 9 14 14 O 1.42898 * 109.47182 * 65.00050 * 13 12 11 15 15 C 1.46508 * 119.99641 * 183.90087 * 11 9 8 16 16 C 1.52993 * 109.46883 * 90.00471 * 15 11 9 17 17 N 1.46503 * 109.46988 * 180.02562 * 16 15 11 18 18 C 1.36941 * 119.99926 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99989 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99614 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00347 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47263 * 89.99301 * 22 20 18 24 24 H 1.48498 * 109.47054 * 209.99910 * 22 20 18 25 25 H 1.48506 * 109.46870 * 329.99918 * 22 20 18 26 26 N 1.31815 * 107.31597 * 359.97438 * 8 7 6 27 27 N 1.28449 * 110.44251 * 0.02562 * 26 8 7 28 28 H 0.96992 * 125.00916 * 179.97438 * 27 26 8 29 29 C 1.36162 * 125.49117 * 180.29291 * 2 1 3 30 30 H 1.08993 * 109.47338 * 90.01998 * 1 2 3 31 31 H 1.09001 * 109.46643 * 210.01935 * 1 2 3 32 32 H 1.08999 * 109.46586 * 330.01533 * 1 2 3 33 33 H 1.07999 * 125.72112 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.33672 * 179.97438 * 4 3 2 35 35 H 1.08008 * 127.28268 * 0.24096 * 7 6 5 36 36 H 1.09005 * 109.47106 * 203.43463 * 12 11 9 37 37 H 1.08998 * 109.47444 * 323.42737 * 12 11 9 38 38 H 1.09008 * 109.46750 * 185.00001 * 13 12 11 39 39 H 1.09001 * 109.47170 * 304.99424 * 13 12 11 40 40 H 0.96700 * 114.00126 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.46808 * 210.00741 * 15 11 9 42 42 H 1.09004 * 109.46963 * 329.99992 * 15 11 9 43 43 H 1.09003 * 109.46974 * 299.99770 * 16 15 11 44 44 H 1.08999 * 109.47255 * 59.99981 * 16 15 11 45 45 H 0.96995 * 119.99904 * 359.97438 * 17 16 15 46 46 H 0.96998 * 120.00395 * 180.02562 * 21 20 18 47 47 H 1.07993 * 125.97986 * 0.05066 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1108 0.0000 4 6 3.5446 0.7190 0.0006 5 6 3.5546 -0.7003 0.0003 6 6 4.7512 -1.5721 0.0013 7 6 6.0560 -1.1649 0.0031 8 6 6.8204 -2.3524 0.0040 9 6 8.2949 -2.4445 0.0054 10 8 8.9669 -1.4379 -0.1094 11 7 8.8950 -3.6444 0.1342 12 6 8.0873 -4.8654 0.1866 13 6 7.7477 -5.3139 -1.2362 14 8 8.9478 -5.6834 -1.9183 15 6 10.3551 -3.7275 0.2216 16 6 10.7839 -3.6422 1.6877 17 7 12.2440 -3.7248 1.7751 18 6 12.8610 -3.6701 2.9964 19 1 12.2713 -3.5658 3.8950 20 6 14.2444 -3.7489 3.0791 21 7 14.9630 -3.8766 1.9838 22 14 15.0862 -3.6736 4.7450 23 1 15.2235 -5.0470 5.2927 24 1 16.4320 -3.0646 4.5924 25 1 14.2722 -2.8493 5.6741 26 7 5.9746 -3.3634 0.0033 27 7 4.7636 -2.9352 0.0016 28 1 3.9741 -3.4987 0.0004 29 6 2.2555 -1.1086 -0.0057 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3632 -0.8898 0.5141 32 1 -0.3632 0.8901 0.5136 33 1 1.9093 2.1333 0.0004 34 1 4.4102 1.3649 0.0003 35 1 6.4245 -0.1496 0.0077 36 1 8.6494 -5.6515 0.6910 37 1 7.1662 -4.6685 0.7351 38 1 7.0741 -6.1699 -1.1963 39 1 7.2640 -4.4954 -1.7694 40 1 8.8078 -5.9794 -2.8282 41 1 10.6909 -4.6746 -0.2008 42 1 10.7999 -2.9031 -0.3358 43 1 10.4480 -2.6951 2.1100 44 1 10.3390 -4.4667 2.2449 45 1 12.7735 -3.8189 0.9679 46 1 15.9297 -3.9320 2.0417 47 1 1.9123 -2.1326 -0.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717051956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:37 Heat of formation + Delta-G solvation = 42.441146 kcal Electronic energy + Delta-G solvation = -29653.939047 eV Core-core repulsion = 25453.392309 eV Total energy + Delta-G solvation = -4200.546737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.61419 -41.92731 -40.76079 -38.12216 -37.09619 -35.92103 -34.43635 -33.62899 -32.79719 -31.72468 -30.68682 -29.49679 -28.95860 -27.02500 -26.19097 -24.71710 -23.79496 -23.30601 -22.72984 -21.41953 -20.84729 -19.85684 -19.19342 -19.14488 -18.51259 -17.86783 -17.50705 -16.96594 -16.83178 -16.53233 -16.14526 -15.86672 -15.53159 -15.41645 -15.10411 -15.01604 -14.92617 -14.71377 -14.54891 -14.10846 -13.98667 -13.67057 -13.52872 -13.28743 -13.23046 -13.07646 -12.90760 -12.85955 -12.77816 -12.48971 -12.17655 -12.12160 -11.87660 -11.66814 -11.23912 -10.98064 -10.94412 -10.76358 -10.40423 -9.70642 -9.33702 -9.06232 -8.76091 -7.95959 -5.27534 0.40013 0.67486 1.45981 1.46503 1.50004 1.58457 1.71072 2.00545 2.13301 2.22625 2.43739 2.56931 3.19668 3.36389 3.49354 3.73135 3.90177 4.07067 4.08623 4.14015 4.19273 4.23396 4.30342 4.31540 4.38569 4.48967 4.51947 4.54855 4.58833 4.62206 4.77465 4.79545 4.84195 4.97288 5.04527 5.08731 5.14196 5.32412 5.36617 5.43778 5.55505 5.83220 6.09303 6.17036 6.24612 6.36702 6.43587 6.83637 6.97705 7.10126 7.30403 8.01273 8.28608 9.27512 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.002053 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.229011 B =13632.853229 C =14813.389338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.445 5.445 3 C -0.009 4.009 4 C -0.199 4.199 5 C -0.145 4.145 6 C 0.125 3.875 7 C -0.198 4.198 8 C -0.023 4.023 9 C 0.589 3.411 10 O -0.576 6.576 11 N -0.584 5.584 12 C 0.100 3.900 13 C 0.075 3.925 14 O -0.593 6.593 15 C 0.132 3.868 16 C 0.150 3.850 17 N -0.741 5.741 18 C -0.253 4.253 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.982 3.018 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.272 1.272 26 N -0.248 5.248 27 N -0.363 5.363 28 H 0.462 0.538 29 C 0.016 3.984 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.191 0.809 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.392 0.608 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.002 0.998 44 H 0.028 0.972 45 H 0.375 0.625 46 H 0.254 0.746 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.916 2.030 -8.489 41.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.119 5.119 3 C -0.139 4.139 4 C -0.224 4.224 5 C -0.154 4.154 6 C -0.001 4.001 7 C -0.227 4.227 8 C -0.181 4.181 9 C 0.376 3.624 10 O -0.454 6.454 11 N -0.315 5.315 12 C -0.022 4.022 13 C -0.003 4.003 14 O -0.401 6.401 15 C 0.008 3.992 16 C 0.023 3.977 17 N -0.385 5.385 18 C -0.385 4.385 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.810 3.190 23 H -0.207 1.207 24 H -0.218 1.218 25 H -0.197 1.197 26 N -0.085 5.085 27 N -0.081 5.081 28 H 0.311 0.689 29 C -0.119 4.119 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.208 0.792 34 H 0.152 0.848 35 H 0.168 0.832 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.242 0.758 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.020 0.980 44 H 0.046 0.954 45 H 0.207 0.793 46 H 0.062 0.938 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -40.699 1.585 -7.796 41.469 hybrid contribution 0.790 0.683 -0.100 1.049 sum -39.910 2.268 -7.896 40.746 Atomic orbital electron populations 1.22390 0.74210 1.06226 1.04710 1.44210 1.07970 1.05349 1.54338 1.22152 0.89579 0.92993 1.09133 1.21048 0.97456 0.93587 1.10285 1.17352 0.89388 0.92802 1.15861 1.19197 0.93406 0.83566 1.03949 1.21608 0.91248 0.99086 1.10716 1.21359 0.92518 0.92016 1.12202 1.17517 0.85853 0.82978 0.76012 1.90775 1.65611 1.36851 1.52160 1.47671 1.06557 1.06684 1.70578 1.22258 0.97171 0.85181 0.97612 1.22529 0.86475 0.99067 0.92238 1.86531 1.33453 1.88514 1.31634 1.21293 0.79327 1.02742 0.95825 1.20940 0.84434 0.97055 0.95309 1.42374 1.01344 1.88753 1.05990 1.19616 0.90480 1.41732 0.86623 0.90851 1.25679 0.96805 1.03054 1.01159 1.69836 1.05217 1.58398 1.28311 0.85024 0.77409 0.77795 0.78783 1.20733 1.21766 1.19667 1.73484 0.90256 1.24831 1.19941 1.43572 1.06740 1.05198 1.52547 0.68904 1.22200 0.88692 0.93336 1.07671 0.89576 0.88022 0.88239 0.79208 0.84774 0.83235 0.89837 0.85525 0.89716 0.94110 0.75833 0.89049 0.92254 0.98046 0.95364 0.79263 0.93763 0.78674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.07 11.10 127.77 1.42 1.35 16 2 N -0.44 -3.22 3.14 -547.03 -1.72 -4.94 16 3 C -0.01 -0.10 11.40 83.14 0.95 0.85 16 4 C -0.20 -3.26 10.65 22.35 0.24 -3.02 16 5 C -0.15 -2.32 6.12 -20.24 -0.12 -2.45 16 6 C 0.12 2.47 7.13 40.69 0.29 2.76 16 7 C -0.20 -5.49 10.58 22.64 0.24 -5.25 16 8 C -0.02 -0.68 6.60 42.39 0.28 -0.40 16 9 C 0.59 22.63 7.63 86.76 0.66 23.29 16 10 O -0.58 -27.13 16.48 -3.93 -0.06 -27.19 16 11 N -0.58 -20.85 2.44 -825.34 -2.01 -22.86 16 12 C 0.10 2.67 5.37 86.38 0.46 3.13 16 13 C 0.08 1.63 6.80 71.98 0.49 2.12 16 14 O -0.59 -14.84 13.30 -148.98 -1.98 -16.82 16 15 C 0.13 5.56 5.52 86.38 0.48 6.03 16 16 C 0.15 7.31 6.58 86.38 0.57 7.88 16 17 N -0.74 -42.88 5.60 -343.46 -1.92 -44.80 16 18 C -0.25 -15.55 9.99 84.03 0.84 -14.71 16 19 H 0.07 4.35 7.83 -2.92 -0.02 4.33 16 20 C -0.07 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 22 Si 0.98 48.90 29.55 68.60 2.03 50.93 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 26 N -0.25 -5.42 7.57 -48.33 -0.37 -5.79 16 27 N -0.36 -5.50 6.90 -48.51 -0.33 -5.84 16 28 H 0.46 2.57 8.96 -220.01 -1.97 0.59 16 29 C 0.02 0.14 11.40 83.54 0.95 1.09 16 30 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.08 2.26 8.02 -2.38 -0.02 2.24 16 37 H 0.13 2.99 5.37 -2.39 -0.01 2.97 16 38 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.04 0.93 7.19 -2.39 -0.02 0.92 16 40 H 0.39 6.03 9.12 -74.06 -0.68 5.36 16 41 H 0.09 3.73 7.76 -2.39 -0.02 3.71 16 42 H 0.06 2.79 7.37 -2.38 -0.02 2.77 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.38 22.71 7.67 -92.71 -0.71 22.00 16 46 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.20 0.20 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -90.59 400.40 -0.21 -90.80 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -2.33 Total: 30.44 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 8.21 Total: 18.55 kcal Atomic # 7 Polarization: -140.63 SS G_CDS: -6.07 Total: -146.70 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -2.05 Total: -44.01 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -90.59 -0.21 -90.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717051956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.243 kcal (2) G-P(sol) polarization free energy of solvation -90.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds