Wall clock time and date at job start Wed Apr 1 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99891 * 2 1 4 4 C 1.53006 * 109.46561 * 269.99324 * 3 2 1 5 5 H 1.08996 * 109.46923 * 60.00716 * 4 3 2 6 6 O 1.42893 * 109.47417 * 300.00047 * 4 3 2 7 7 C 1.53002 * 109.46705 * 180.02562 * 4 3 2 8 8 N 1.46505 * 109.46915 * 185.00613 * 7 4 3 9 9 C 1.36930 * 119.99786 * 179.72964 * 8 7 4 10 10 H 1.08002 * 120.00281 * 0.26409 * 9 8 7 11 11 C 1.38813 * 120.00019 * 180.27338 * 9 8 7 12 12 N 1.31622 * 120.00276 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99969 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46732 * 90.00081 * 13 11 9 15 15 H 1.48495 * 109.47268 * 209.99958 * 13 11 9 16 16 H 1.48500 * 109.46822 * 330.00711 * 13 11 9 17 17 C 1.34779 * 120.00198 * 179.97438 * 2 1 3 18 18 O 1.21651 * 120.00023 * 175.85351 * 17 2 1 19 19 C 1.47019 * 119.99563 * 355.85910 * 17 2 1 20 20 C 1.41371 * 126.48668 * 35.51459 * 19 17 2 21 21 N 1.30358 * 108.15826 * 179.87566 * 20 19 17 22 22 N 1.39899 * 109.15079 * 0.38659 * 21 20 19 23 23 C 1.46506 * 125.75927 * 179.71520 * 22 21 20 24 24 C 1.34746 * 108.48719 * 359.75049 * 22 21 20 25 25 N 1.38987 * 126.41511 * 179.97438 * 24 22 21 26 26 C 1.36733 * 125.68987 * 134.69254 * 25 24 22 27 27 C 1.34783 * 108.18795 * 179.83568 * 26 25 24 28 28 C 1.41026 * 107.50407 * 0.42250 * 27 26 25 29 29 C 1.34788 * 107.50012 * 359.73858 * 28 27 26 30 30 H 1.08994 * 109.46834 * 95.44479 * 1 2 3 31 31 H 1.09000 * 109.46987 * 215.45046 * 1 2 3 32 32 H 1.09004 * 109.46840 * 335.44472 * 1 2 3 33 33 H 1.08996 * 109.46917 * 150.00036 * 3 2 1 34 34 H 1.08996 * 109.47495 * 29.99556 * 3 2 1 35 35 H 0.96695 * 114.00200 * 300.00113 * 6 4 3 36 36 H 1.08997 * 109.46830 * 65.00594 * 7 4 3 37 37 H 1.09004 * 109.47272 * 305.00043 * 7 4 3 38 38 H 0.96998 * 119.99647 * 359.97438 * 8 7 4 39 39 H 0.97001 * 119.99976 * 179.97438 * 12 11 9 40 40 H 1.07996 * 125.91717 * 0.02562 * 20 19 17 41 41 H 1.08994 * 109.46827 * 270.03783 * 23 22 21 42 42 H 1.08990 * 109.46620 * 30.04094 * 23 22 21 43 43 H 1.09004 * 109.46895 * 150.04385 * 23 22 21 44 44 H 1.08004 * 125.90639 * 359.96488 * 26 25 24 45 45 H 1.08000 * 126.25097 * 180.16528 * 27 26 25 46 46 H 1.07992 * 126.24961 * 179.75540 * 28 27 26 47 47 H 1.08002 * 125.90570 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 1.5002 1.8406 -1.9564 6 8 3.2249 0.7144 -2.1161 7 6 3.2182 3.0350 -1.4426 8 7 3.3581 3.5181 -2.8187 9 6 4.0079 4.6974 -3.0675 10 1 4.4210 5.2693 -2.2497 11 6 4.1355 5.1580 -4.3707 12 7 4.7597 6.2918 -4.6099 13 14 3.4214 4.1686 -5.7852 14 1 2.0220 4.5993 -6.0336 15 1 4.2334 4.3953 -7.0076 16 1 3.4407 2.7247 -5.4386 17 6 2.1390 -1.1672 0.0005 18 8 3.3531 -1.1686 -0.0757 19 6 1.4067 -2.4387 0.0930 20 6 0.1466 -2.7266 -0.4794 21 7 -0.1651 -3.9560 -0.1783 22 7 0.8573 -4.5116 0.5985 23 6 0.8776 -5.8726 1.1403 24 6 1.8198 -3.5834 0.7650 25 7 3.0036 -3.7408 1.4760 26 6 4.2450 -3.3526 1.0543 27 6 5.1343 -3.6695 2.0162 28 6 4.4218 -4.2840 3.0667 29 6 3.1220 -4.3151 2.7112 30 1 -0.3633 -0.0975 -1.0230 31 1 -0.3633 -0.8372 0.5960 32 1 -0.3633 0.9348 0.4271 33 1 3.1499 1.1384 0.5138 34 1 1.6085 2.0284 0.5137 35 1 4.0873 0.5459 -1.7126 36 1 4.2064 2.8835 -1.0085 37 1 2.6711 3.7708 -0.8532 38 1 2.9872 3.0043 -3.5531 39 1 4.8492 6.6135 -5.5206 40 1 -0.4527 -2.0467 -1.0667 41 1 0.4148 -5.8777 2.1271 42 1 0.3244 -6.5363 0.4760 43 1 1.9090 -6.2161 1.2209 44 1 4.4732 -2.8728 0.1139 45 1 6.1988 -3.4899 1.9861 46 1 4.8410 -4.6607 3.9880 47 1 2.3139 -4.7233 3.2999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717923604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:55 Heat of formation + Delta-G solvation = 88.777488 kcal Electronic energy + Delta-G solvation = -30924.983791 eV Core-core repulsion = 26726.446349 eV Total energy + Delta-G solvation = -4198.537443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53956 -40.88238 -39.67680 -37.29703 -35.43797 -34.19824 -34.03427 -33.08163 -31.44456 -30.15557 -29.18468 -28.96960 -27.70693 -27.09651 -25.53549 -23.21157 -22.32971 -22.17503 -21.23028 -20.63445 -20.45386 -19.38375 -18.36399 -17.67618 -17.34119 -16.63011 -16.50831 -15.89700 -15.68520 -15.21210 -14.86448 -14.67940 -14.47006 -14.41958 -14.20429 -13.94929 -13.58579 -13.50611 -13.37695 -13.18441 -13.04534 -12.94999 -12.67580 -12.50950 -12.35017 -12.27355 -12.20446 -11.54279 -11.50692 -11.19712 -10.82658 -10.77166 -10.35881 -10.13769 -10.00211 -9.70580 -9.53469 -9.43834 -8.87620 -8.76511 -8.54153 -8.44586 -7.19443 -5.73235 -3.08405 0.71756 1.41557 1.75347 2.06950 2.53697 2.77329 2.84197 3.04343 3.43273 3.50674 3.51802 3.86079 4.35992 4.49058 4.51761 4.53881 4.64869 4.74927 4.80065 4.82127 4.82993 4.90874 4.98478 5.13047 5.17743 5.26812 5.29449 5.37848 5.44995 5.53030 5.61369 5.65657 5.79698 5.86836 5.96779 5.98401 5.99416 6.02092 6.39605 6.48453 6.61041 6.68052 6.77353 7.00039 7.09737 7.27035 8.01323 8.10471 8.18082 8.45801 9.25861 9.98301 10.18678 11.44996 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.002534 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.335830 B =11047.428966 C =11787.048173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.089 3.911 4 C 0.083 3.917 5 H 0.095 0.905 6 O -0.550 6.550 7 C 0.130 3.870 8 N -0.749 5.749 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.935 5.935 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.272 1.272 17 C 0.601 3.399 18 O -0.530 6.530 19 C -0.276 4.276 20 C 0.093 3.907 21 N -0.276 5.276 22 N -0.364 5.364 23 C 0.092 3.908 24 C 0.352 3.648 25 N -0.396 5.396 26 C 0.047 3.953 27 C -0.206 4.206 28 C -0.170 4.170 29 C -0.040 4.040 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.377 0.623 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.365 0.635 39 H 0.259 0.741 40 H 0.202 0.798 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.187 0.813 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 -26.553 17.744 33.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C -0.034 4.034 4 C 0.022 3.978 5 H 0.112 0.888 6 O -0.356 6.356 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.583 5.583 13 Si 0.713 3.287 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.198 1.198 17 C 0.390 3.610 18 O -0.407 6.407 19 C -0.292 4.292 20 C -0.094 4.094 21 N -0.096 5.096 22 N -0.147 5.147 23 C -0.048 4.048 24 C 0.129 3.871 25 N -0.075 5.075 26 C -0.079 4.079 27 C -0.230 4.230 28 C -0.195 4.195 29 C -0.163 4.163 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.199 0.801 39 H 0.069 0.931 40 H 0.218 0.782 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.204 0.796 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.752 -27.402 17.151 34.397 hybrid contribution 0.378 0.120 -0.545 0.674 sum -11.374 -27.282 16.607 33.904 Atomic orbital electron populations 1.22064 0.79793 1.03434 1.01794 1.47403 1.06706 1.05601 1.73673 1.22272 0.98384 0.84243 0.98525 1.22531 0.95630 0.88299 0.91366 0.88756 1.86510 1.33370 1.58928 1.56788 1.21222 0.97431 0.92547 0.88635 1.42586 1.69456 1.25489 1.01994 1.19052 1.28225 0.96176 0.93991 0.89317 1.24664 1.00436 0.97048 0.96980 1.69709 1.47408 1.21375 1.19806 0.86545 0.78750 0.80430 0.82963 1.21172 1.21778 1.19788 1.16853 0.86340 0.82052 0.75779 1.90686 1.13357 1.86742 1.49928 1.19839 0.99439 0.95066 1.14903 1.24218 0.93845 0.93443 0.97870 1.77299 1.09383 1.10726 1.12193 1.48598 1.14570 1.11319 1.40172 1.22096 1.04654 0.78017 1.00080 1.17815 0.84397 0.89078 0.95772 1.40696 1.03662 1.48731 1.14385 1.22692 0.80401 1.02211 1.02550 1.21081 0.99615 1.07115 0.95159 1.21033 0.92452 1.05410 1.00620 1.21889 0.99153 1.07730 0.87570 0.92202 0.91030 0.90524 0.89302 0.89412 0.77506 0.95257 0.94937 0.80138 0.93087 0.78156 0.89989 0.88110 0.89043 0.79598 0.83713 0.83993 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 9.04 59.85 0.54 1.10 16 2 N -0.60 -6.79 2.83 -182.99 -0.52 -7.31 16 3 C 0.09 1.08 5.18 -4.04 -0.02 1.06 16 4 C 0.08 1.28 3.27 -26.73 -0.09 1.19 16 5 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 6 O -0.55 -9.66 12.00 -48.24 -0.58 -10.24 16 7 C 0.13 2.48 5.90 -4.04 -0.02 2.45 16 8 N -0.75 -18.37 5.35 -59.90 -0.32 -18.69 16 9 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 10 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 11 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 12 N -0.94 -29.96 13.97 55.49 0.78 -29.18 16 13 Si 0.88 22.91 27.74 -169.99 -4.71 18.20 16 14 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 16 H -0.27 -6.86 6.52 56.52 0.37 -6.49 16 17 C 0.60 7.88 7.11 -12.70 -0.09 7.79 16 18 O -0.53 -8.07 11.39 -7.78 -0.09 -8.16 16 19 C -0.28 -3.18 5.42 -104.86 -0.57 -3.74 16 20 C 0.09 0.89 9.70 -16.99 -0.16 0.72 16 21 N -0.28 -2.77 12.48 30.86 0.39 -2.39 16 22 N -0.36 -3.36 3.99 -66.65 -0.27 -3.63 16 23 C 0.09 0.47 10.56 59.85 0.63 1.10 16 24 C 0.35 3.87 7.12 -153.04 -1.09 2.78 16 25 N -0.40 -4.30 2.86 -62.22 -0.18 -4.48 16 26 C 0.05 0.56 9.60 -16.59 -0.16 0.40 16 27 C -0.21 -2.18 10.86 -39.75 -0.43 -2.61 16 28 C -0.17 -1.54 10.86 -39.75 -0.43 -1.98 16 29 C -0.04 -0.35 10.02 -16.59 -0.17 -0.52 16 30 H 0.06 0.41 7.26 -51.93 -0.38 0.03 16 31 H 0.07 0.49 5.85 -51.93 -0.30 0.18 16 32 H 0.08 0.48 7.83 -51.93 -0.41 0.07 16 33 H 0.09 1.15 7.48 -51.93 -0.39 0.76 16 34 H 0.09 0.87 7.86 -51.93 -0.41 0.46 16 35 H 0.38 6.24 8.33 45.56 0.38 6.62 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.37 9.02 5.53 -40.82 -0.23 8.79 16 39 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 40 H 0.20 1.37 6.14 -52.49 -0.32 1.05 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.42 7.48 -51.93 -0.39 0.04 16 44 H 0.19 2.46 6.13 -52.48 -0.32 2.14 16 45 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.16 0.97 7.91 -52.49 -0.42 0.55 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -37.19 384.95 -7.75 -44.93 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.73 Total: 12.61 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.31 Total: 2.53 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.12 Total: -65.67 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.67 Total: -18.40 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.19 -7.75 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717923604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.712 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds