Wall clock time and date at job start Wed Apr 1 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99891 * 2 1 4 4 C 1.53006 * 109.46561 * 269.99324 * 3 2 1 5 5 H 1.08996 * 109.46923 * 60.00716 * 4 3 2 6 6 O 1.42893 * 109.47417 * 300.00047 * 4 3 2 7 7 C 1.53002 * 109.46705 * 180.02562 * 4 3 2 8 8 N 1.46505 * 109.46915 * 185.00613 * 7 4 3 9 9 C 1.36930 * 119.99786 * 179.72964 * 8 7 4 10 10 H 1.08002 * 120.00281 * 0.26409 * 9 8 7 11 11 C 1.38813 * 120.00019 * 180.27338 * 9 8 7 12 12 N 1.31622 * 120.00276 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99969 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46732 * 90.00081 * 13 11 9 15 15 H 1.48495 * 109.47268 * 209.99958 * 13 11 9 16 16 H 1.48500 * 109.46822 * 330.00711 * 13 11 9 17 17 C 1.34779 * 120.00198 * 179.97438 * 2 1 3 18 18 O 1.21651 * 120.00023 * 175.85351 * 17 2 1 19 19 C 1.47019 * 119.99563 * 355.85910 * 17 2 1 20 20 C 1.41371 * 126.48668 * 35.51459 * 19 17 2 21 21 N 1.30358 * 108.15826 * 179.87566 * 20 19 17 22 22 N 1.39899 * 109.15079 * 0.38659 * 21 20 19 23 23 C 1.46506 * 125.75927 * 179.71520 * 22 21 20 24 24 C 1.34746 * 108.48719 * 359.75049 * 22 21 20 25 25 N 1.38987 * 126.41511 * 179.97438 * 24 22 21 26 26 C 1.36733 * 125.68987 * 134.69254 * 25 24 22 27 27 C 1.34783 * 108.18795 * 179.83568 * 26 25 24 28 28 C 1.41026 * 107.50407 * 0.42250 * 27 26 25 29 29 C 1.34788 * 107.50012 * 359.73858 * 28 27 26 30 30 H 1.08994 * 109.46834 * 95.44479 * 1 2 3 31 31 H 1.09000 * 109.46987 * 215.45046 * 1 2 3 32 32 H 1.09004 * 109.46840 * 335.44472 * 1 2 3 33 33 H 1.08996 * 109.46917 * 150.00036 * 3 2 1 34 34 H 1.08996 * 109.47495 * 29.99556 * 3 2 1 35 35 H 0.96695 * 114.00200 * 300.00113 * 6 4 3 36 36 H 1.08997 * 109.46830 * 65.00594 * 7 4 3 37 37 H 1.09004 * 109.47272 * 305.00043 * 7 4 3 38 38 H 0.96998 * 119.99647 * 359.97438 * 8 7 4 39 39 H 0.97001 * 119.99976 * 179.97438 * 12 11 9 40 40 H 1.07996 * 125.91717 * 0.02562 * 20 19 17 41 41 H 1.08994 * 109.46827 * 270.03783 * 23 22 21 42 42 H 1.08990 * 109.46620 * 30.04094 * 23 22 21 43 43 H 1.09004 * 109.46895 * 150.04385 * 23 22 21 44 44 H 1.08004 * 125.90639 * 359.96488 * 26 25 24 45 45 H 1.08000 * 126.25097 * 180.16528 * 27 26 25 46 46 H 1.07992 * 126.24961 * 179.75540 * 28 27 26 47 47 H 1.08002 * 125.90570 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 1.5002 1.8406 -1.9564 6 8 3.2249 0.7144 -2.1161 7 6 3.2182 3.0350 -1.4426 8 7 3.3581 3.5181 -2.8187 9 6 4.0079 4.6974 -3.0675 10 1 4.4210 5.2693 -2.2497 11 6 4.1355 5.1580 -4.3707 12 7 4.7597 6.2918 -4.6099 13 14 3.4214 4.1686 -5.7852 14 1 2.0220 4.5993 -6.0336 15 1 4.2334 4.3953 -7.0076 16 1 3.4407 2.7247 -5.4386 17 6 2.1390 -1.1672 0.0005 18 8 3.3531 -1.1686 -0.0757 19 6 1.4067 -2.4387 0.0930 20 6 0.1466 -2.7266 -0.4794 21 7 -0.1651 -3.9560 -0.1783 22 7 0.8573 -4.5116 0.5985 23 6 0.8776 -5.8726 1.1403 24 6 1.8198 -3.5834 0.7650 25 7 3.0036 -3.7408 1.4760 26 6 4.2450 -3.3526 1.0543 27 6 5.1343 -3.6695 2.0162 28 6 4.4218 -4.2840 3.0667 29 6 3.1220 -4.3151 2.7112 30 1 -0.3633 -0.0975 -1.0230 31 1 -0.3633 -0.8372 0.5960 32 1 -0.3633 0.9348 0.4271 33 1 3.1499 1.1384 0.5138 34 1 1.6085 2.0284 0.5137 35 1 4.0873 0.5459 -1.7126 36 1 4.2064 2.8835 -1.0085 37 1 2.6711 3.7708 -0.8532 38 1 2.9872 3.0043 -3.5531 39 1 4.8492 6.6135 -5.5206 40 1 -0.4527 -2.0467 -1.0667 41 1 0.4148 -5.8777 2.1271 42 1 0.3244 -6.5363 0.4760 43 1 1.9090 -6.2161 1.2209 44 1 4.4732 -2.8728 0.1139 45 1 6.1988 -3.4899 1.9861 46 1 4.8410 -4.6607 3.9880 47 1 2.3139 -4.7233 3.2999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717923604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:51 Heat of formation + Delta-G solvation = 62.476830 kcal Electronic energy + Delta-G solvation = -30926.124273 eV Core-core repulsion = 26726.446349 eV Total energy + Delta-G solvation = -4199.677925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.27006 -41.62137 -40.62249 -38.61207 -36.47282 -35.93559 -34.79821 -33.79974 -33.46837 -31.40290 -30.01628 -29.77735 -28.55041 -27.84637 -26.82137 -24.52872 -23.48402 -22.99657 -22.70746 -21.49362 -21.14899 -20.17611 -19.79500 -19.11874 -18.20569 -17.73791 -17.29999 -16.84067 -16.64704 -16.46444 -16.22786 -15.96091 -15.46178 -15.27016 -15.16159 -14.96746 -14.90534 -14.64140 -14.28257 -14.17501 -13.89545 -13.78898 -13.70046 -13.59600 -13.34969 -13.29203 -13.11406 -12.95344 -12.83572 -12.54281 -12.27074 -12.24394 -11.90882 -11.85354 -11.16052 -11.06980 -11.00358 -10.81895 -10.13486 -9.62421 -9.39874 -9.31200 -9.22557 -8.04371 -5.37084 -0.05158 0.75020 1.00996 1.31692 1.37364 1.40611 1.48999 1.84544 1.98956 2.03368 2.17803 2.47464 3.22179 3.26422 3.44776 3.68440 3.72758 3.76797 3.90689 4.03097 4.16123 4.19051 4.23617 4.24936 4.25365 4.38021 4.39485 4.50671 4.54672 4.60403 4.63611 4.69017 4.77578 4.92710 4.93360 5.11541 5.22175 5.24664 5.28587 5.36286 5.53810 5.73258 5.87098 6.02834 6.19768 6.28321 6.35063 6.41195 6.81402 7.06797 7.22893 7.83641 8.01979 9.17032 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.002534 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.335830 B =11047.428966 C =11787.048173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.601 5.601 3 C 0.099 3.901 4 C 0.094 3.906 5 H 0.101 0.899 6 O -0.566 6.566 7 C 0.126 3.874 8 N -0.754 5.754 9 C -0.234 4.234 10 H 0.059 0.941 11 C -0.063 4.063 12 N -0.983 5.983 13 Si 0.955 3.045 14 H -0.273 1.273 15 H -0.296 1.296 16 H -0.260 1.260 17 C 0.592 3.408 18 O -0.561 6.561 19 C -0.297 4.297 20 C 0.099 3.901 21 N -0.287 5.287 22 N -0.359 5.359 23 C 0.082 3.918 24 C 0.341 3.659 25 N -0.400 5.400 26 C 0.018 3.982 27 C -0.211 4.211 28 C -0.179 4.179 29 C -0.032 4.032 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.378 0.622 36 H 0.024 0.976 37 H 0.046 0.954 38 H 0.366 0.634 39 H 0.258 0.742 40 H 0.224 0.776 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.165 0.835 45 H 0.152 0.848 46 H 0.167 0.833 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 -28.847 18.877 36.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.332 5.332 3 C -0.025 4.025 4 C 0.034 3.966 5 H 0.118 0.882 6 O -0.372 6.372 7 C -0.002 4.002 8 N -0.400 5.400 9 C -0.365 4.365 10 H 0.077 0.923 11 C -0.255 4.255 12 N -0.633 5.633 13 Si 0.782 3.218 14 H -0.199 1.199 15 H -0.222 1.222 16 H -0.185 1.185 17 C 0.381 3.619 18 O -0.441 6.441 19 C -0.313 4.313 20 C -0.088 4.088 21 N -0.107 5.107 22 N -0.141 5.141 23 C -0.057 4.057 24 C 0.117 3.883 25 N -0.078 5.078 26 C -0.108 4.108 27 C -0.234 4.234 28 C -0.203 4.203 29 C -0.156 4.156 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.226 0.774 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.199 0.801 39 H 0.067 0.933 40 H 0.241 0.759 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.182 0.818 45 H 0.169 0.831 46 H 0.184 0.816 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.324 -29.745 18.329 37.762 hybrid contribution 1.188 0.802 -0.768 1.626 sum -13.137 -28.943 17.561 36.313 Atomic orbital electron populations 1.22325 0.77428 1.04969 1.02968 1.47474 1.08155 1.04613 1.72913 1.22082 0.98862 0.85494 0.96057 1.22473 0.94668 0.85919 0.93572 0.88164 1.86482 1.33730 1.59328 1.57663 1.21450 0.97979 0.94820 0.85904 1.42623 1.68906 1.24153 1.04316 1.19064 1.27158 0.97111 0.93193 0.92302 1.25480 1.01671 0.98386 0.99919 1.69878 1.49625 1.23504 1.20321 0.85402 0.78147 0.79260 0.78946 1.19925 1.22226 1.18538 1.17218 0.86202 0.83042 0.75422 1.90678 1.14767 1.87288 1.51371 1.19875 1.00390 0.94834 1.16249 1.24539 0.93192 0.93555 0.97466 1.77268 1.09892 1.10964 1.12602 1.48898 1.13723 1.12057 1.39409 1.22454 1.05477 0.76271 1.01497 1.17965 0.84726 0.89578 0.96022 1.40752 1.03225 1.48887 1.14983 1.22482 0.81617 1.04073 1.02602 1.21329 1.00010 1.06716 0.95393 1.21348 0.92485 1.05380 1.01090 1.22435 1.00047 1.06339 0.86739 0.91052 0.90043 0.88636 0.90515 0.86507 0.77356 0.95787 0.93560 0.80065 0.93288 0.75935 0.87580 0.86888 0.88646 0.81805 0.83079 0.81590 0.79293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 9.04 127.77 1.15 1.96 16 2 N -0.60 -12.53 2.83 -851.11 -2.41 -14.93 16 3 C 0.10 2.23 5.18 86.38 0.45 2.67 16 4 C 0.09 2.78 3.27 30.60 0.10 2.88 16 5 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 6 O -0.57 -19.57 12.00 -136.54 -1.64 -21.21 16 7 C 0.13 4.68 5.90 86.38 0.51 5.19 16 8 N -0.75 -36.48 5.35 -343.44 -1.84 -38.32 16 9 C -0.23 -13.75 10.47 84.03 0.88 -12.87 16 10 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 11 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 12 N -0.98 -64.28 13.97 21.65 0.30 -63.98 16 13 Si 0.95 47.54 27.74 68.60 1.90 49.45 16 14 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 15 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 16 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 17 C 0.59 15.24 7.11 86.54 0.62 15.85 16 18 O -0.56 -17.60 11.39 8.25 0.09 -17.51 16 19 C -0.30 -6.56 5.42 -20.02 -0.11 -6.67 16 20 C 0.10 1.70 9.70 85.68 0.83 2.53 16 21 N -0.29 -5.20 12.48 -56.27 -0.70 -5.90 16 22 N -0.36 -5.95 3.99 -364.79 -1.46 -7.40 16 23 C 0.08 0.63 10.56 127.77 1.35 1.98 16 24 C 0.34 7.17 7.12 132.33 0.94 8.11 16 25 N -0.40 -8.42 2.86 -350.78 -1.00 -9.42 16 26 C 0.02 0.44 9.60 83.14 0.80 1.24 16 27 C -0.21 -4.44 10.86 22.16 0.24 -4.20 16 28 C -0.18 -2.95 10.86 22.16 0.24 -2.71 16 29 C -0.03 -0.51 10.02 83.14 0.83 0.32 16 30 H 0.07 0.75 7.26 -2.39 -0.02 0.73 16 31 H 0.08 0.88 5.85 -2.39 -0.01 0.87 16 32 H 0.10 0.85 7.83 -2.38 -0.02 0.83 16 33 H 0.08 1.95 7.48 -2.39 -0.02 1.93 16 34 H 0.12 1.96 7.86 -2.39 -0.02 1.94 16 35 H 0.38 12.74 8.33 -74.06 -0.62 12.12 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.37 17.52 5.53 -92.71 -0.51 17.00 16 39 H 0.26 16.07 8.31 -92.71 -0.77 15.29 16 40 H 0.22 2.47 6.14 -2.91 -0.02 2.45 16 41 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.10 0.68 7.48 -2.39 -0.02 0.66 16 44 H 0.16 4.73 6.13 -2.91 -0.02 4.71 16 45 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 46 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 47 H 0.19 1.67 7.91 -2.91 -0.02 1.65 16 Total: -1.00 -82.01 384.95 2.38 -79.63 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.17 Total: 36.68 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 9.30 Total: 12.93 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -7.11 Total: -139.96 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.55 Total: -38.72 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.90 Total: 49.45 kcal Total: -82.01 2.38 -79.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717923604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.104 kcal (2) G-P(sol) polarization free energy of solvation -82.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds