Wall clock time and date at job start Wed Apr 1 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35032 * 124.88610 * 2 1 4 4 C 1.35370 * 107.22781 * 179.72399 * 3 2 1 5 5 C 1.41510 * 105.50208 * 0.41127 * 4 3 2 6 6 C 1.47712 * 126.51709 * 179.84618 * 5 4 3 7 7 O 1.21564 * 119.99963 * 359.71396 * 6 5 4 8 8 N 1.34777 * 119.99437 * 179.71255 * 6 5 4 9 9 C 1.46505 * 119.99305 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46784 * 180.02562 * 9 8 6 11 11 C 1.29823 * 118.55903 * 94.99514 * 10 9 8 12 12 C 1.50140 * 123.28749 * 180.39016 * 11 10 9 13 13 N 1.46846 * 110.27590 * 342.93553 * 12 11 10 14 14 C 1.46899 * 111.00302 * 174.31282 * 13 12 11 15 15 C 1.50698 * 109.46987 * 66.03980 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47239 * 110.20601 * 50.91850 * 13 12 11 27 27 C 1.50311 * 118.54939 * 275.02136 * 10 9 8 28 28 N 1.28467 * 124.88245 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47564 * 269.97958 * 1 2 3 30 30 H 1.09005 * 109.46913 * 29.97957 * 1 2 3 31 31 H 1.09002 * 109.47378 * 149.97819 * 1 2 3 32 32 H 1.07997 * 126.38903 * 359.97438 * 3 2 1 33 33 H 1.08000 * 127.25078 * 180.26087 * 4 3 2 34 34 H 0.96995 * 120.00499 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47150 * 60.00098 * 9 8 6 36 36 H 1.09003 * 109.47146 * 299.99438 * 9 8 6 37 37 H 1.08001 * 118.35167 * 0.37934 * 11 10 9 38 38 H 1.08998 * 109.34082 * 222.68723 * 12 11 10 39 39 H 1.09003 * 109.33334 * 103.17518 * 12 11 10 40 40 H 1.09003 * 109.46477 * 306.04469 * 14 13 12 41 41 H 1.08993 * 109.47002 * 186.04796 * 14 13 12 42 42 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.63934 * 50.89479 * 26 13 12 45 45 H 1.08999 * 109.63492 * 171.50188 * 26 13 12 46 46 H 1.09006 * 109.42858 * 283.57665 * 27 10 9 47 47 H 1.08998 * 109.43146 * 43.42197 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4740 -0.7170 0.0001 6 6 4.6272 -1.6400 0.0002 7 8 5.7596 -1.1979 0.0007 8 7 4.4239 -2.9724 -0.0002 9 6 5.5677 -3.8878 0.0005 10 6 5.0720 -5.3110 -0.0008 11 6 4.9628 -5.9291 -1.1372 12 6 4.4729 -7.3428 -1.2625 13 7 4.5366 -8.0207 0.0385 14 6 3.9365 -9.3595 -0.0353 15 6 4.7693 -10.2342 -0.9366 16 8 5.7651 -9.7865 -1.4650 17 7 4.4081 -11.5142 -1.1547 18 6 5.1626 -12.3085 -1.9791 19 1 6.0488 -11.9096 -2.4502 20 6 4.7870 -13.6264 -2.2085 21 7 3.7084 -14.1115 -1.6356 22 14 5.8154 -14.7087 -3.3312 23 1 7.1931 -14.8176 -2.7879 24 1 5.2057 -16.0605 -3.4103 25 1 5.8647 -14.1083 -4.6885 26 6 3.8777 -7.2032 1.0707 27 6 4.7253 -5.9521 1.3138 28 7 2.1997 -1.0539 0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.8906 2.1305 -0.0004 33 1 4.4108 1.3179 0.0119 34 1 3.5203 -3.3252 -0.0009 35 1 6.1717 -3.7139 0.8909 36 1 6.1731 -3.7136 -0.8891 37 1 5.2380 -5.3998 -2.0375 38 1 5.0954 -7.8783 -1.9793 39 1 3.4420 -7.3374 -1.6165 40 1 2.9257 -9.2828 -0.4362 41 1 3.8995 -9.7966 0.9624 42 1 3.6119 -11.8723 -0.7318 43 1 3.4464 -15.0317 -1.7955 44 1 2.8848 -6.9114 0.7283 45 1 3.7961 -7.7758 1.9946 46 1 5.6416 -6.2308 1.8342 47 1 4.1628 -5.2458 1.9245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718032362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:42 Heat of formation + Delta-G solvation = 38.205946 kcal Electronic energy + Delta-G solvation = -29023.771425 eV Core-core repulsion = 24823.041036 eV Total energy + Delta-G solvation = -4200.730389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.99764 -39.76716 -39.07274 -37.70249 -35.43663 -33.96446 -33.85930 -32.91134 -31.23215 -31.09889 -30.71503 -28.83985 -27.68654 -25.91392 -24.30092 -23.58099 -22.98923 -21.86579 -21.75088 -20.28497 -19.21010 -18.43551 -17.87096 -17.44801 -16.82250 -16.69620 -16.16783 -16.06369 -15.46900 -15.28320 -14.78946 -14.64945 -14.40186 -14.19782 -14.00766 -13.83179 -13.72303 -13.55167 -13.45311 -13.19313 -13.08443 -12.83455 -12.60168 -12.23179 -12.13695 -11.83266 -11.48373 -11.32834 -11.30442 -11.05833 -10.83417 -10.48355 -10.42516 -10.33372 -10.19654 -9.67646 -9.47354 -9.46795 -9.16552 -8.84676 -8.45008 -7.96646 -7.81676 -6.40446 -3.81149 1.26171 1.77586 1.97327 2.11462 3.21185 3.22299 3.24030 3.26786 3.31308 3.91309 3.93175 4.00932 4.26153 4.37262 4.48490 4.52136 4.61473 4.77605 4.80344 4.93351 5.05251 5.24510 5.27646 5.29642 5.36211 5.38888 5.46644 5.57827 5.58840 5.69452 5.72590 5.82209 5.95327 5.97893 6.00625 6.14800 6.25095 6.26460 6.32063 6.37575 6.49296 6.96269 7.25988 7.34642 7.37512 7.56384 7.56679 8.03762 8.07716 8.63352 9.19506 9.55857 10.07875 10.77218 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.001650 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.162065 B =16966.845552 C =17429.129844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.285 5.285 3 C -0.020 4.020 4 C -0.179 4.179 5 C -0.017 4.017 6 C 0.603 3.397 7 O -0.535 6.535 8 N -0.711 5.711 9 C 0.158 3.842 10 C -0.155 4.155 11 C -0.106 4.106 12 C 0.073 3.927 13 N -0.509 5.509 14 C 0.045 3.955 15 C 0.443 3.557 16 O -0.577 6.577 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.050 3.950 27 C -0.071 4.071 28 N -0.262 5.262 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.163 0.837 34 H 0.407 0.593 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 28.168 6.180 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.163 4.163 4 C -0.207 4.207 5 C -0.177 4.177 6 C 0.387 3.613 7 O -0.409 6.409 8 N -0.362 5.362 9 C 0.036 3.964 10 C -0.156 4.156 11 C -0.126 4.126 12 C -0.054 4.054 13 N -0.233 5.233 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.078 4.078 27 C -0.108 4.108 28 N -0.098 5.098 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.200 0.800 33 H 0.181 0.819 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.628 27.593 5.943 29.822 hybrid contribution -0.973 -0.177 -0.496 1.106 sum -10.600 27.416 5.448 29.894 Atomic orbital electron populations 1.22207 0.73062 1.05615 1.04592 1.45421 1.07880 1.03128 1.50915 1.22886 0.90988 0.93786 1.08624 1.21813 0.97392 0.93535 1.07930 1.21978 0.90698 0.94290 1.10715 1.16896 0.86559 0.81466 0.76403 1.90802 1.22552 1.77157 1.50434 1.45974 1.10873 1.05077 1.74322 1.20380 0.87663 0.85440 1.02922 1.20826 1.04457 0.94519 0.95808 1.22345 0.97181 0.95697 0.97347 1.21250 0.99689 0.91724 0.92728 1.62036 1.54469 1.01161 1.05631 1.21906 0.95922 0.89871 1.00960 1.19744 0.87928 0.83218 0.86234 1.90482 1.28217 1.73604 1.53818 1.41860 1.26126 1.09190 1.42912 1.19654 1.08203 0.92250 1.22729 0.87953 1.25254 0.96850 0.97461 0.98371 1.69605 1.24210 1.16591 1.43981 0.85920 0.79602 0.78491 0.80211 1.19886 1.21015 1.19954 1.22216 0.95056 0.94464 0.96081 1.20395 1.00538 0.95357 0.94523 1.73516 1.03004 1.14206 1.19093 0.89581 0.88521 0.88391 0.80004 0.81941 0.75811 0.90682 0.90800 0.87124 0.86471 0.94217 0.93471 0.89201 0.77506 0.91860 0.94886 0.90443 0.90029 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.20 11.31 59.84 0.68 0.87 16 2 N -0.29 -1.98 3.70 -68.13 -0.25 -2.23 16 3 C -0.02 -0.13 11.46 -17.17 -0.20 -0.32 16 4 C -0.18 -1.63 10.81 -39.36 -0.43 -2.06 16 5 C -0.02 -0.19 7.13 -82.76 -0.59 -0.78 16 6 C 0.60 7.76 7.82 -12.39 -0.10 7.66 16 7 O -0.53 -8.42 16.93 5.31 0.09 -8.33 16 8 N -0.71 -7.98 5.55 -62.47 -0.35 -8.32 16 9 C 0.16 1.84 5.72 -5.19 -0.03 1.81 16 10 C -0.16 -1.90 5.26 -100.92 -0.53 -2.43 16 11 C -0.11 -1.45 9.50 -35.97 -0.34 -1.79 16 12 C 0.07 1.19 5.22 -5.28 -0.03 1.16 16 13 N -0.51 -8.49 4.46 -237.58 -1.06 -9.55 16 14 C 0.04 0.79 5.44 -4.98 -0.03 0.77 16 15 C 0.44 10.39 7.54 -10.99 -0.08 10.31 16 16 O -0.58 -15.43 13.88 5.55 0.08 -15.35 16 17 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 22 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.05 0.64 5.59 -3.61 -0.02 0.62 16 27 C -0.07 -0.82 6.04 -28.04 -0.17 -0.99 16 28 N -0.26 -2.61 11.67 33.42 0.39 -2.22 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 -0.03 8.13 -51.93 -0.42 -0.45 16 31 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.41 4.13 8.19 -40.82 -0.33 3.79 16 35 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 36 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 37 H 0.11 1.38 7.81 -52.49 -0.41 0.97 16 38 H 0.12 2.32 5.98 -51.93 -0.31 2.01 16 39 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 40 H 0.05 0.76 8.06 -51.93 -0.42 0.34 16 41 H 0.09 1.44 7.94 -51.93 -0.41 1.03 16 42 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 45 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 46 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -35.38 397.58 -8.32 -43.70 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.76 Total: 11.42 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.10 Total: 6.88 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.60 Total: -60.37 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.38 -8.32 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718032362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.908 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds