Wall clock time and date at job start Wed Apr 1 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35032 * 124.88610 * 2 1 4 4 C 1.35370 * 107.22781 * 179.72399 * 3 2 1 5 5 C 1.41510 * 105.50208 * 0.41127 * 4 3 2 6 6 C 1.47712 * 126.51709 * 179.84618 * 5 4 3 7 7 O 1.21564 * 119.99963 * 359.71396 * 6 5 4 8 8 N 1.34777 * 119.99437 * 179.71255 * 6 5 4 9 9 C 1.46505 * 119.99305 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46784 * 180.02562 * 9 8 6 11 11 C 1.29823 * 118.55903 * 94.99514 * 10 9 8 12 12 C 1.50140 * 123.28749 * 180.39016 * 11 10 9 13 13 N 1.46846 * 110.27590 * 342.93553 * 12 11 10 14 14 C 1.46899 * 111.00302 * 174.31282 * 13 12 11 15 15 C 1.50698 * 109.46987 * 66.03980 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47239 * 110.20601 * 50.91850 * 13 12 11 27 27 C 1.50311 * 118.54939 * 275.02136 * 10 9 8 28 28 N 1.28467 * 124.88245 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47564 * 269.97958 * 1 2 3 30 30 H 1.09005 * 109.46913 * 29.97957 * 1 2 3 31 31 H 1.09002 * 109.47378 * 149.97819 * 1 2 3 32 32 H 1.07997 * 126.38903 * 359.97438 * 3 2 1 33 33 H 1.08000 * 127.25078 * 180.26087 * 4 3 2 34 34 H 0.96995 * 120.00499 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47150 * 60.00098 * 9 8 6 36 36 H 1.09003 * 109.47146 * 299.99438 * 9 8 6 37 37 H 1.08001 * 118.35167 * 0.37934 * 11 10 9 38 38 H 1.08998 * 109.34082 * 222.68723 * 12 11 10 39 39 H 1.09003 * 109.33334 * 103.17518 * 12 11 10 40 40 H 1.09003 * 109.46477 * 306.04469 * 14 13 12 41 41 H 1.08993 * 109.47002 * 186.04796 * 14 13 12 42 42 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.63934 * 50.89479 * 26 13 12 45 45 H 1.08999 * 109.63492 * 171.50188 * 26 13 12 46 46 H 1.09006 * 109.42858 * 283.57665 * 27 10 9 47 47 H 1.08998 * 109.43146 * 43.42197 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4740 -0.7170 0.0001 6 6 4.6272 -1.6400 0.0002 7 8 5.7596 -1.1979 0.0007 8 7 4.4239 -2.9724 -0.0002 9 6 5.5677 -3.8878 0.0005 10 6 5.0720 -5.3110 -0.0008 11 6 4.9628 -5.9291 -1.1372 12 6 4.4729 -7.3428 -1.2625 13 7 4.5366 -8.0207 0.0385 14 6 3.9365 -9.3595 -0.0353 15 6 4.7693 -10.2342 -0.9366 16 8 5.7651 -9.7865 -1.4650 17 7 4.4081 -11.5142 -1.1547 18 6 5.1626 -12.3085 -1.9791 19 1 6.0488 -11.9096 -2.4502 20 6 4.7870 -13.6264 -2.2085 21 7 3.7084 -14.1115 -1.6356 22 14 5.8154 -14.7087 -3.3312 23 1 7.1931 -14.8176 -2.7879 24 1 5.2057 -16.0605 -3.4103 25 1 5.8647 -14.1083 -4.6885 26 6 3.8777 -7.2032 1.0707 27 6 4.7253 -5.9521 1.3138 28 7 2.1997 -1.0539 0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.8906 2.1305 -0.0004 33 1 4.4108 1.3179 0.0119 34 1 3.5203 -3.3252 -0.0009 35 1 6.1717 -3.7139 0.8909 36 1 6.1731 -3.7136 -0.8891 37 1 5.2380 -5.3998 -2.0375 38 1 5.0954 -7.8783 -1.9793 39 1 3.4420 -7.3374 -1.6165 40 1 2.9257 -9.2828 -0.4362 41 1 3.8995 -9.7966 0.9624 42 1 3.6119 -11.8723 -0.7318 43 1 3.4464 -15.0317 -1.7955 44 1 2.8848 -6.9114 0.7283 45 1 3.7961 -7.7758 1.9946 46 1 5.6416 -6.2308 1.8342 47 1 4.1628 -5.2458 1.9245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718032362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:38 Heat of formation + Delta-G solvation = 10.763105 kcal Electronic energy + Delta-G solvation = -29024.961436 eV Core-core repulsion = 24823.041036 eV Total energy + Delta-G solvation = -4201.920400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.58528 -40.89083 -40.38750 -39.27029 -36.62240 -35.85255 -34.51709 -33.96334 -33.22899 -31.79911 -31.71651 -29.95549 -28.49179 -27.26014 -25.84503 -24.72600 -23.86934 -22.85477 -22.42604 -21.11643 -21.04234 -19.87403 -19.16694 -18.43146 -17.77996 -17.53341 -17.25249 -17.13585 -16.68600 -16.62868 -16.24994 -15.91969 -15.69036 -15.44682 -15.30944 -15.04732 -14.70745 -14.66126 -14.14209 -14.05543 -13.86130 -13.75373 -13.50281 -13.49396 -13.34324 -13.25718 -12.98481 -12.90557 -12.50037 -12.42408 -12.12228 -12.09641 -11.96376 -11.52736 -11.44978 -11.36088 -10.36365 -10.26922 -10.16029 -10.00031 -9.95664 -9.90231 -9.18354 -8.45110 -5.93440 0.50521 0.99191 1.20423 1.40138 1.41917 1.52632 1.63819 2.07458 2.29295 2.34103 2.36106 2.78030 3.21657 3.37064 3.39852 3.55736 3.80384 3.98875 4.03864 4.17494 4.28255 4.36102 4.40537 4.42461 4.43707 4.48098 4.53564 4.58308 4.62971 4.66603 4.72456 4.75846 4.76923 4.81396 4.94587 5.07423 5.17570 5.27836 5.35707 5.38713 5.42842 5.85497 5.89367 5.96516 6.13244 6.21049 6.39748 6.62933 6.88574 7.11843 7.14896 7.58667 8.15028 8.72000 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.001650 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.162065 B =16966.845552 C =17429.129844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.280 5.280 3 C 0.001 3.999 4 C -0.207 4.207 5 C -0.049 4.049 6 C 0.600 3.400 7 O -0.573 6.573 8 N -0.701 5.701 9 C 0.164 3.836 10 C -0.135 4.135 11 C -0.124 4.124 12 C 0.079 3.921 13 N -0.530 5.530 14 C 0.057 3.943 15 C 0.440 3.560 16 O -0.615 6.615 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.051 3.949 27 C -0.070 4.070 28 N -0.278 5.278 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.228 0.772 33 H 0.162 0.838 34 H 0.414 0.586 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 29.684 7.228 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.069 5.069 3 C -0.142 4.142 4 C -0.235 4.235 5 C -0.207 4.207 6 C 0.386 3.614 7 O -0.451 6.451 8 N -0.352 5.352 9 C 0.041 3.959 10 C -0.136 4.136 11 C -0.144 4.144 12 C -0.048 4.048 13 N -0.255 5.255 14 C -0.074 4.074 15 C 0.228 3.772 16 O -0.501 6.501 17 N -0.212 5.212 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.076 4.076 27 C -0.108 4.108 28 N -0.116 5.116 29 H 0.120 0.880 30 H 0.148 0.852 31 H 0.115 0.885 32 H 0.244 0.756 33 H 0.180 0.820 34 H 0.250 0.750 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.992 29.096 7.012 32.242 hybrid contribution -0.344 -0.530 -0.784 1.007 sum -12.336 28.567 6.228 31.734 Atomic orbital electron populations 1.22644 0.70319 1.07296 1.06146 1.45931 1.09396 1.02672 1.48858 1.23493 0.89725 0.95303 1.05644 1.22038 0.99057 0.92856 1.09544 1.21846 0.90776 0.94891 1.13226 1.17206 0.86719 0.81905 0.75573 1.90766 1.24142 1.77810 1.52423 1.45854 1.10977 1.04666 1.73707 1.20277 0.87823 0.85152 1.02653 1.20913 1.02474 0.94428 0.95785 1.22233 0.99081 0.94698 0.98343 1.21021 0.99304 0.92487 0.92000 1.61981 1.55770 1.01229 1.06548 1.21781 0.95423 0.89621 1.00563 1.20812 0.87705 0.82987 0.85724 1.90466 1.30139 1.74276 1.55200 1.41923 1.26249 1.09850 1.43157 1.19613 1.08569 0.93530 1.24496 0.90405 1.26005 0.97851 0.98031 0.99345 1.69664 1.24889 1.17110 1.44447 0.85010 0.78059 0.77166 0.78219 1.19846 1.19457 1.19807 1.22339 0.95541 0.94359 0.95402 1.20465 1.00702 0.95433 0.94157 1.73449 1.02668 1.15699 1.19794 0.88037 0.85220 0.88462 0.75555 0.82020 0.75010 0.90516 0.91624 0.86614 0.90796 0.93525 0.91347 0.86866 0.77011 0.91348 0.93415 0.88752 0.90322 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 11.31 127.77 1.44 1.53 16 2 N -0.28 -3.17 3.70 -369.45 -1.37 -4.54 16 3 C 0.00 0.01 11.46 83.54 0.96 0.97 16 4 C -0.21 -3.63 10.81 22.41 0.24 -3.39 16 5 C -0.05 -1.10 7.13 42.46 0.30 -0.79 16 6 C 0.60 15.74 7.82 86.75 0.68 16.42 16 7 O -0.57 -18.74 16.93 -3.92 -0.07 -18.81 16 8 N -0.70 -15.54 5.55 -469.83 -2.61 -18.14 16 9 C 0.16 3.77 5.72 85.63 0.49 4.26 16 10 C -0.14 -3.20 5.26 -15.40 -0.08 -3.28 16 11 C -0.12 -3.40 9.50 26.68 0.25 -3.15 16 12 C 0.08 2.61 5.22 85.39 0.45 3.06 16 13 N -0.53 -17.26 4.46 -905.56 -4.04 -21.30 16 14 C 0.06 1.97 5.44 85.56 0.47 2.44 16 15 C 0.44 21.06 7.54 87.66 0.66 21.72 16 16 O -0.61 -34.22 13.88 -3.07 -0.04 -34.26 16 17 N -0.57 -29.57 5.29 -306.98 -1.62 -31.20 16 18 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 22 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 C 0.05 1.17 5.59 86.26 0.48 1.65 16 27 C -0.07 -1.48 6.04 29.75 0.18 -1.30 16 28 N -0.28 -5.21 11.67 -48.17 -0.56 -5.77 16 29 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.13 -0.67 8.13 -2.38 -0.02 -0.69 16 31 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.23 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.41 8.05 8.19 -92.71 -0.76 7.29 16 35 H 0.08 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 37 H 0.12 2.98 7.81 -2.91 -0.02 2.96 16 38 H 0.07 3.09 5.98 -2.39 -0.01 3.08 16 39 H 0.05 1.43 8.06 -2.39 -0.02 1.41 16 40 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 41 H 0.11 3.39 7.94 -2.39 -0.02 3.37 16 42 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 43 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 45 H 0.09 1.89 7.92 -2.39 -0.02 1.87 16 46 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -80.17 397.58 -0.67 -80.84 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.48 Total: 35.53 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 7.80 Total: 21.76 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -9.91 Total: -130.41 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.11 Total: -53.07 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -80.17 -0.67 -80.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718032362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.601 kcal (2) G-P(sol) polarization free energy of solvation -80.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds