Wall clock time and date at job start Wed Apr 1 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 120.00429 * 2 1 4 4 H 1.08002 * 119.99236 * 322.02108 * 3 2 1 5 5 C 1.38808 * 120.00368 * 142.01610 * 3 2 1 6 6 N 1.31612 * 119.99782 * 157.51592 * 5 3 2 7 7 Si 1.86798 * 120.00003 * 337.52285 * 5 3 2 8 8 H 1.48506 * 109.47188 * 92.18583 * 7 5 3 9 9 H 1.48499 * 109.47054 * 212.18573 * 7 5 3 10 10 H 1.48493 * 109.47384 * 332.18768 * 7 5 3 11 11 C 1.46498 * 120.00000 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47171 * 90.00394 * 11 2 1 13 13 C 1.53007 * 109.47504 * 180.02562 * 12 11 2 14 14 N 1.46498 * 109.47403 * 180.02562 * 13 12 11 15 15 C 1.46506 * 119.99803 * 269.99897 * 14 13 12 16 16 C 1.34767 * 120.00188 * 89.99849 * 14 13 12 17 17 O 1.21697 * 120.00333 * 2.28852 * 16 14 13 18 18 C 1.46654 * 120.00252 * 182.28572 * 16 14 13 19 19 C 1.36546 * 125.98925 * 175.46591 * 18 16 14 20 20 C 1.40370 * 106.70579 * 179.78520 * 19 18 16 21 21 C 1.35128 * 107.11571 * 0.40952 * 20 19 18 22 22 C 1.50702 * 125.61727 * 179.85386 * 21 20 19 23 23 N 1.46499 * 109.47139 * 89.71344 * 22 21 20 24 24 C 1.35314 * 125.86714 * 124.72264 * 23 22 21 25 25 C 1.35349 * 106.17583 * 179.90596 * 24 23 22 26 26 N 1.33770 * 106.49340 * 0.34197 * 25 24 23 27 27 N 1.28627 * 108.88855 * 359.78071 * 26 25 24 28 28 O 1.33933 * 108.76853 * 359.58199 * 21 20 19 29 29 H 1.08992 * 109.47521 * 265.09808 * 1 2 3 30 30 H 1.09003 * 109.47148 * 25.10272 * 1 2 3 31 31 H 1.09007 * 109.47033 * 145.09498 * 1 2 3 32 32 H 0.97004 * 120.00313 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47300 * 330.00341 * 11 2 1 34 34 H 1.09000 * 109.47442 * 210.00509 * 11 2 1 35 35 H 1.08998 * 109.47582 * 60.00344 * 12 11 2 36 36 H 1.09007 * 109.47277 * 299.99768 * 12 11 2 37 37 H 1.09004 * 109.46939 * 59.99566 * 13 12 11 38 38 H 1.08998 * 109.46675 * 300.00001 * 13 12 11 39 39 H 1.09003 * 109.47052 * 264.18939 * 15 14 13 40 40 H 1.09001 * 109.47149 * 24.18755 * 15 14 13 41 41 H 1.08996 * 109.46822 * 144.18740 * 15 14 13 42 42 H 1.07994 * 126.64655 * 0.03779 * 19 18 16 43 43 H 1.08006 * 126.43905 * 180.26071 * 20 19 18 44 44 H 1.09000 * 109.47263 * 209.71737 * 22 21 20 45 45 H 1.08998 * 109.46968 * 329.71344 * 22 21 20 46 46 H 1.08002 * 126.91116 * 0.02562 * 24 23 22 47 47 H 1.07999 * 126.74976 * 180.12672 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7812 2.0221 -0.5756 5 6 3.3173 1.3132 0.7398 6 7 4.1998 2.2368 0.4228 7 14 3.6362 0.1736 2.1851 8 1 4.4073 -1.0084 1.7228 9 1 4.4137 0.8965 3.2234 10 1 2.3413 -0.2735 2.7581 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2170 -3.0364 -1.4412 14 7 3.4618 -3.4595 -2.8222 15 6 2.4851 -4.3051 -3.5132 16 6 4.5853 -3.0710 -3.4569 17 8 5.4162 -2.4035 -2.8696 18 6 4.8068 -3.4528 -4.8555 19 6 5.8522 -3.0564 -5.6395 20 6 5.6672 -3.6592 -6.8936 21 6 4.5266 -4.3805 -6.8238 22 6 3.9337 -5.1955 -7.9442 23 7 4.4684 -6.5584 -7.8925 24 6 3.7371 -7.6950 -7.8263 25 6 4.6267 -8.7147 -7.7994 26 7 5.8427 -8.1591 -7.8422 27 7 5.7146 -6.8804 -7.8970 28 8 4.0129 -4.2565 -5.5931 29 1 -0.3634 -0.0878 1.0238 30 1 -0.3633 0.9306 -0.4360 31 1 -0.3633 -0.8428 -0.5881 32 1 5.0159 2.3256 0.9395 33 1 1.6084 -2.0281 0.5147 34 1 3.1498 -1.1382 0.5144 35 1 3.0417 -0.9516 -1.9558 36 1 1.5001 -1.8416 -1.9556 37 1 2.6275 -3.7956 -0.9271 38 1 4.1694 -2.9062 -0.9272 39 1 2.7844 -5.3497 -3.4284 40 1 1.5029 -4.1706 -3.0600 41 1 2.4413 -4.0239 -4.5654 42 1 6.6660 -2.4084 -5.3495 43 1 6.3136 -3.5626 -7.7535 44 1 2.8494 -5.2262 -7.8368 45 1 4.1912 -4.7402 -8.9004 46 1 2.6601 -7.7729 -7.8019 47 1 4.3994 -9.7694 -7.7493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724851173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:31 Heat of formation + Delta-G solvation = 128.002294 kcal Electronic energy + Delta-G solvation = -30103.179596 eV Core-core repulsion = 25906.343069 eV Total energy + Delta-G solvation = -4196.836527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.71355 -43.04956 -39.65853 -36.55428 -35.73272 -35.49944 -33.42616 -32.15414 -31.48246 -31.35367 -30.78407 -27.87521 -27.20450 -26.24205 -25.34998 -23.29749 -22.97509 -22.42262 -21.85958 -21.21895 -20.62957 -19.97144 -18.36483 -17.76974 -17.17248 -16.80318 -16.63541 -16.02815 -15.85975 -15.45088 -15.23185 -15.01946 -14.67737 -14.38882 -14.07965 -13.84542 -13.58956 -13.57209 -13.30264 -13.20996 -13.12887 -12.79074 -12.61926 -12.16983 -12.05795 -12.03348 -11.82133 -11.36407 -11.34696 -11.09948 -10.81964 -10.73234 -10.47611 -10.41576 -10.35158 -10.18528 -9.81356 -9.72132 -9.48101 -9.07562 -8.67169 -8.45034 -6.78226 -5.95237 -3.37100 0.56798 1.13132 1.66133 2.11630 2.20533 2.30812 2.88949 3.09460 3.34899 3.49235 3.54425 3.79452 3.84495 4.10652 4.34385 4.48365 4.56629 4.58645 4.61996 4.79542 4.94682 5.01996 5.19285 5.21432 5.23040 5.31249 5.34281 5.41468 5.51706 5.67426 5.72420 5.73118 5.86273 5.99614 5.99705 6.04016 6.08366 6.26724 6.33463 6.40483 6.51386 6.65392 6.70133 6.80727 7.04695 7.24242 7.98974 8.09576 8.10139 8.41438 9.02112 9.75165 10.15575 11.20477 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002199 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.162523 B =12729.913695 C =13140.686744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.612 5.612 3 C -0.273 4.273 4 H 0.077 0.923 5 C 0.037 3.963 6 N -0.897 5.897 7 Si 0.878 3.122 8 H -0.282 1.282 9 H -0.301 1.301 10 H -0.271 1.271 11 C 0.139 3.861 12 C -0.146 4.146 13 C 0.113 3.887 14 N -0.603 5.603 15 C 0.076 3.924 16 C 0.592 3.408 17 O -0.501 6.501 18 C -0.041 4.041 19 C -0.128 4.128 20 C -0.158 4.158 21 C -0.046 4.046 22 C 0.204 3.796 23 N -0.296 5.296 24 C -0.047 4.047 25 C -0.052 4.052 26 N -0.269 5.269 27 N -0.073 5.073 28 O -0.152 6.152 29 H 0.006 0.994 30 H 0.044 0.956 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.193 0.807 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -21.361 -19.543 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.336 5.336 3 C -0.402 4.402 4 H 0.094 0.906 5 C -0.164 4.164 6 N -0.538 5.538 7 Si 0.709 3.291 8 H -0.210 1.210 9 H -0.229 1.229 10 H -0.196 1.196 11 C 0.012 3.988 12 C -0.187 4.187 13 C -0.009 4.009 14 N -0.336 5.336 15 C -0.067 4.067 16 C 0.378 3.622 17 O -0.377 6.377 18 C -0.094 4.094 19 C -0.149 4.149 20 C -0.178 4.178 21 C -0.098 4.098 22 C 0.083 3.917 23 N -0.090 5.090 24 C -0.197 4.197 25 C -0.208 4.208 26 N -0.136 5.136 27 N -0.053 5.053 28 O -0.048 6.048 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.184 0.816 43 H 0.179 0.821 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.210 0.790 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.690 -20.496 -19.093 28.253 hybrid contribution -0.911 -0.876 0.732 1.460 sum -4.600 -21.372 -18.361 28.549 Atomic orbital electron populations 1.21059 0.84688 0.98928 0.97256 1.44025 1.00720 1.02025 1.86801 1.18752 1.06281 0.90769 1.24352 0.90576 1.25472 0.96770 0.96424 0.97727 1.69867 1.08570 1.35886 1.39461 0.86949 0.77815 0.80213 0.84151 1.20987 1.22900 1.19619 1.21112 0.96604 0.87759 0.93278 1.22496 0.99357 0.95479 1.01402 1.21740 1.02015 0.97174 0.79942 1.47817 1.20053 1.50481 1.15203 1.21972 0.92687 0.94055 0.97946 1.16691 0.82448 0.80323 0.82692 1.90972 1.44181 1.38050 1.64475 1.22379 0.93998 0.99499 0.93530 1.22049 0.99122 1.01331 0.92362 1.21681 0.97057 0.99501 0.99524 1.22136 0.97443 1.04146 0.86081 1.20299 0.99724 0.75749 0.95882 1.47602 1.05900 1.08020 1.47521 1.23763 1.00875 0.85366 1.09684 1.23680 0.88713 1.01232 1.07203 1.75168 1.23235 0.99056 1.16124 1.78392 0.98801 1.09533 1.18622 1.84236 1.45430 1.54527 1.20650 0.97622 0.93696 0.95700 0.92659 0.94432 0.92505 0.90695 0.92831 0.90535 0.89542 0.92648 0.90233 0.90339 0.81594 0.82109 0.85523 0.84832 0.79005 0.79229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.53 10.70 59.84 0.64 3.18 16 2 N -0.61 -14.91 2.47 -181.13 -0.45 -15.36 16 3 C -0.27 -7.86 9.88 -15.06 -0.15 -8.01 16 4 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 5 C 0.04 1.10 5.30 -17.43 -0.09 1.01 16 6 N -0.90 -28.25 13.97 55.49 0.78 -27.48 16 7 Si 0.88 22.88 25.20 -169.99 -4.28 18.59 16 8 H -0.28 -7.11 6.52 56.52 0.37 -6.74 16 9 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.14 3.01 4.53 -4.05 -0.02 2.99 16 12 C -0.15 -2.78 5.86 -26.73 -0.16 -2.94 16 13 C 0.11 1.80 5.40 -4.04 -0.02 1.78 16 14 N -0.60 -8.74 2.87 -183.13 -0.53 -9.26 16 15 C 0.08 0.76 9.62 59.85 0.58 1.34 16 16 C 0.59 9.81 7.65 -12.87 -0.10 9.71 16 17 O -0.50 -10.38 16.43 5.19 0.09 -10.30 16 18 C -0.04 -0.56 6.78 -36.80 -0.25 -0.81 16 19 C -0.13 -1.57 10.63 -39.39 -0.42 -1.99 16 20 C -0.16 -1.48 10.77 -39.89 -0.43 -1.91 16 21 C -0.05 -0.39 6.68 -35.41 -0.24 -0.62 16 22 C 0.20 0.89 6.98 -5.19 -0.04 0.85 16 23 N -0.30 -2.15 3.43 -62.44 -0.21 -2.36 16 24 C -0.05 -0.25 11.57 -17.05 -0.20 -0.45 16 25 C -0.05 -0.38 12.05 -17.74 -0.21 -0.59 16 26 N -0.27 -3.08 12.41 30.23 0.38 -2.70 16 27 N -0.07 -0.81 12.92 60.35 0.78 -0.03 16 28 O -0.15 -1.60 7.26 4.97 0.04 -1.57 16 29 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 31 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 33 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.06 1.38 3.24 -51.93 -0.17 1.21 16 35 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 36 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 38 H 0.09 1.57 7.39 -51.93 -0.38 1.19 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.68 8.03 -51.93 -0.42 0.27 16 41 H 0.08 0.73 5.39 -51.93 -0.28 0.45 16 42 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.13 0.13 8.07 -51.93 -0.42 -0.29 16 45 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.19 0.20 8.06 -52.49 -0.42 -0.23 16 47 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -38.98 395.79 -5.30 -44.28 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.74 Total: -3.31 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.10 Total: 3.54 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.74 Total: -57.20 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.12 Total: -11.87 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.28 Total: 18.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.98 -5.30 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724851173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.279 kcal (2) G-P(sol) polarization free energy of solvation -38.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds