Wall clock time and date at job start Wed Apr 1 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 120.00429 * 2 1 4 4 H 1.08002 * 119.99236 * 322.02108 * 3 2 1 5 5 C 1.38808 * 120.00368 * 142.01610 * 3 2 1 6 6 N 1.31612 * 119.99782 * 157.51592 * 5 3 2 7 7 Si 1.86798 * 120.00003 * 337.52285 * 5 3 2 8 8 H 1.48506 * 109.47188 * 92.18583 * 7 5 3 9 9 H 1.48499 * 109.47054 * 212.18573 * 7 5 3 10 10 H 1.48493 * 109.47384 * 332.18768 * 7 5 3 11 11 C 1.46498 * 120.00000 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47171 * 90.00394 * 11 2 1 13 13 C 1.53007 * 109.47504 * 180.02562 * 12 11 2 14 14 N 1.46498 * 109.47403 * 180.02562 * 13 12 11 15 15 C 1.46506 * 119.99803 * 269.99897 * 14 13 12 16 16 C 1.34767 * 120.00188 * 89.99849 * 14 13 12 17 17 O 1.21697 * 120.00333 * 2.28852 * 16 14 13 18 18 C 1.46654 * 120.00252 * 182.28572 * 16 14 13 19 19 C 1.36546 * 125.98925 * 175.46591 * 18 16 14 20 20 C 1.40370 * 106.70579 * 179.78520 * 19 18 16 21 21 C 1.35128 * 107.11571 * 0.40952 * 20 19 18 22 22 C 1.50702 * 125.61727 * 179.85386 * 21 20 19 23 23 N 1.46499 * 109.47139 * 89.71344 * 22 21 20 24 24 C 1.35314 * 125.86714 * 124.72264 * 23 22 21 25 25 C 1.35349 * 106.17583 * 179.90596 * 24 23 22 26 26 N 1.33770 * 106.49340 * 0.34197 * 25 24 23 27 27 N 1.28627 * 108.88855 * 359.78071 * 26 25 24 28 28 O 1.33933 * 108.76853 * 359.58199 * 21 20 19 29 29 H 1.08992 * 109.47521 * 265.09808 * 1 2 3 30 30 H 1.09003 * 109.47148 * 25.10272 * 1 2 3 31 31 H 1.09007 * 109.47033 * 145.09498 * 1 2 3 32 32 H 0.97004 * 120.00313 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47300 * 330.00341 * 11 2 1 34 34 H 1.09000 * 109.47442 * 210.00509 * 11 2 1 35 35 H 1.08998 * 109.47582 * 60.00344 * 12 11 2 36 36 H 1.09007 * 109.47277 * 299.99768 * 12 11 2 37 37 H 1.09004 * 109.46939 * 59.99566 * 13 12 11 38 38 H 1.08998 * 109.46675 * 300.00001 * 13 12 11 39 39 H 1.09003 * 109.47052 * 264.18939 * 15 14 13 40 40 H 1.09001 * 109.47149 * 24.18755 * 15 14 13 41 41 H 1.08996 * 109.46822 * 144.18740 * 15 14 13 42 42 H 1.07994 * 126.64655 * 0.03779 * 19 18 16 43 43 H 1.08006 * 126.43905 * 180.26071 * 20 19 18 44 44 H 1.09000 * 109.47263 * 209.71737 * 22 21 20 45 45 H 1.08998 * 109.46968 * 329.71344 * 22 21 20 46 46 H 1.08002 * 126.91116 * 0.02562 * 24 23 22 47 47 H 1.07999 * 126.74976 * 180.12672 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7812 2.0221 -0.5756 5 6 3.3173 1.3132 0.7398 6 7 4.1998 2.2368 0.4228 7 14 3.6362 0.1736 2.1851 8 1 4.4073 -1.0084 1.7228 9 1 4.4137 0.8965 3.2234 10 1 2.3413 -0.2735 2.7581 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2170 -3.0364 -1.4412 14 7 3.4618 -3.4595 -2.8222 15 6 2.4851 -4.3051 -3.5132 16 6 4.5853 -3.0710 -3.4569 17 8 5.4162 -2.4035 -2.8696 18 6 4.8068 -3.4528 -4.8555 19 6 5.8522 -3.0564 -5.6395 20 6 5.6672 -3.6592 -6.8936 21 6 4.5266 -4.3805 -6.8238 22 6 3.9337 -5.1955 -7.9442 23 7 4.4684 -6.5584 -7.8925 24 6 3.7371 -7.6950 -7.8263 25 6 4.6267 -8.7147 -7.7994 26 7 5.8427 -8.1591 -7.8422 27 7 5.7146 -6.8804 -7.8970 28 8 4.0129 -4.2565 -5.5931 29 1 -0.3634 -0.0878 1.0238 30 1 -0.3633 0.9306 -0.4360 31 1 -0.3633 -0.8428 -0.5881 32 1 5.0159 2.3256 0.9395 33 1 1.6084 -2.0281 0.5147 34 1 3.1498 -1.1382 0.5144 35 1 3.0417 -0.9516 -1.9558 36 1 1.5001 -1.8416 -1.9556 37 1 2.6275 -3.7956 -0.9271 38 1 4.1694 -2.9062 -0.9272 39 1 2.7844 -5.3497 -3.4284 40 1 1.5029 -4.1706 -3.0600 41 1 2.4413 -4.0239 -4.5654 42 1 6.6660 -2.4084 -5.3495 43 1 6.3136 -3.5626 -7.7535 44 1 2.8494 -5.2262 -7.8368 45 1 4.1912 -4.7402 -8.9004 46 1 2.6601 -7.7729 -7.8019 47 1 4.3994 -9.7694 -7.7493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724851173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:29 Heat of formation + Delta-G solvation = 99.378941 kcal Electronic energy + Delta-G solvation = -30104.420798 eV Core-core repulsion = 25906.343069 eV Total energy + Delta-G solvation = -4198.077729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.28506 -43.83185 -40.88105 -38.21755 -36.97663 -36.19738 -34.29625 -34.01220 -32.99330 -31.96966 -31.68636 -28.78400 -28.25805 -27.96312 -26.71486 -24.39536 -23.60314 -23.28528 -22.92039 -22.46302 -21.99035 -21.02218 -19.01887 -18.80986 -18.65079 -17.85557 -17.53965 -17.32543 -17.29471 -16.51244 -16.21450 -15.94907 -15.65665 -15.37092 -15.22995 -15.02829 -14.94271 -14.55256 -14.46762 -14.42886 -14.31914 -14.08689 -13.92562 -13.41054 -13.37136 -13.11104 -12.86314 -12.72986 -12.58559 -12.49351 -12.33178 -12.20188 -11.88430 -11.77210 -11.56186 -11.35715 -11.24978 -11.20371 -10.63832 -10.30860 -10.06725 -9.72580 -8.77387 -8.23935 -5.61935 -0.30712 0.61200 0.95066 1.27293 1.28332 1.36031 1.48414 1.66527 1.75759 1.85552 1.97592 2.39509 2.99876 3.09637 3.43205 3.52200 3.58165 3.73614 3.83853 3.97544 4.15304 4.18296 4.22779 4.31817 4.36726 4.36832 4.40367 4.48915 4.51196 4.60851 4.64618 4.70079 4.72772 4.76472 4.80285 4.90987 5.01504 5.12494 5.16003 5.19279 5.28694 5.30429 5.45347 5.63152 5.63417 5.91247 6.11670 6.13321 6.80498 6.97529 7.54197 7.61549 8.01760 8.96006 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002199 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.162523 B =12729.913695 C =13140.686744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.627 5.627 3 C -0.262 4.262 4 H 0.036 0.964 5 C -0.026 4.026 6 N -0.950 5.950 7 Si 0.947 3.053 8 H -0.274 1.274 9 H -0.308 1.308 10 H -0.251 1.251 11 C 0.132 3.868 12 C -0.129 4.129 13 C 0.119 3.881 14 N -0.601 5.601 15 C 0.071 3.929 16 C 0.583 3.417 17 O -0.565 6.565 18 C -0.072 4.072 19 C -0.136 4.136 20 C -0.171 4.171 21 C -0.022 4.022 22 C 0.199 3.801 23 N -0.295 5.295 24 C -0.023 4.023 25 C -0.071 4.071 26 N -0.317 5.317 27 N -0.121 5.121 28 O -0.144 6.144 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.027 0.973 35 H 0.018 0.982 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.154 0.846 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.163 0.837 46 H 0.243 0.757 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 -25.267 -20.760 33.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.352 5.352 3 C -0.392 4.392 4 H 0.054 0.946 5 C -0.222 4.222 6 N -0.594 5.594 7 Si 0.775 3.225 8 H -0.201 1.201 9 H -0.237 1.237 10 H -0.175 1.175 11 C 0.006 3.994 12 C -0.170 4.170 13 C -0.004 4.004 14 N -0.331 5.331 15 C -0.069 4.069 16 C 0.372 3.628 17 O -0.446 6.446 18 C -0.125 4.125 19 C -0.157 4.157 20 C -0.191 4.191 21 C -0.074 4.074 22 C 0.080 3.920 23 N -0.090 5.090 24 C -0.174 4.174 25 C -0.228 4.228 26 N -0.182 5.182 27 N -0.100 5.100 28 O -0.040 6.040 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.172 0.828 43 H 0.199 0.801 44 H 0.191 0.809 45 H 0.180 0.820 46 H 0.259 0.741 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.574 -24.454 -20.327 32.688 hybrid contribution 0.131 0.280 0.897 0.949 sum -7.443 -24.174 -19.430 31.895 Atomic orbital electron populations 1.21201 0.81854 1.00363 0.98636 1.44204 1.02578 1.01350 1.87081 1.18654 1.06156 0.91687 1.22672 0.94582 1.26176 0.96863 0.98684 1.00524 1.70013 1.09431 1.38967 1.41008 0.85837 0.78378 0.78235 0.80034 1.20137 1.23690 1.17501 1.21243 0.95708 0.87571 0.94842 1.22237 0.99937 0.95490 0.99344 1.21604 1.00693 0.96936 0.81166 1.47918 1.20207 1.50187 1.14800 1.22276 0.92464 0.94007 0.98181 1.17135 0.82360 0.79545 0.83797 1.90923 1.46365 1.41027 1.66258 1.21754 0.95591 1.02253 0.92861 1.22231 0.98573 1.01031 0.93866 1.21933 0.98276 0.99901 0.98983 1.22966 0.96356 1.02340 0.85757 1.20907 1.01931 0.74148 0.94979 1.47785 1.05309 1.09308 1.46585 1.24529 1.02628 0.83836 1.06368 1.24287 0.88017 1.03122 1.07390 1.75098 1.25795 0.99796 1.17553 1.78337 1.00825 1.09613 1.21251 1.84208 1.44805 1.53728 1.21229 0.96369 0.94453 0.91706 0.92974 0.89989 0.95492 0.96291 0.90253 0.85869 0.92734 0.90932 0.87834 0.89567 0.82817 0.80064 0.80910 0.82001 0.74088 0.76901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.62 10.70 127.77 1.37 5.98 16 2 N -0.63 -29.90 2.47 -726.96 -1.80 -31.70 16 3 C -0.26 -15.51 9.88 84.03 0.83 -14.68 16 4 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 5 C -0.03 -1.61 5.30 84.86 0.45 -1.16 16 6 N -0.95 -63.00 13.97 21.65 0.30 -62.70 16 7 Si 0.95 48.39 25.20 68.60 1.73 50.12 16 8 H -0.27 -13.52 6.52 99.48 0.65 -12.87 16 9 H -0.31 -15.93 7.11 99.48 0.71 -15.23 16 10 H -0.25 -11.89 7.11 99.48 0.71 -11.18 16 11 C 0.13 5.45 4.53 86.38 0.39 5.85 16 12 C -0.13 -4.78 5.86 30.59 0.18 -4.60 16 13 C 0.12 3.61 5.40 86.38 0.47 4.08 16 14 N -0.60 -16.75 2.87 -851.52 -2.45 -19.20 16 15 C 0.07 1.17 9.62 127.77 1.23 2.40 16 16 C 0.58 20.10 7.65 86.44 0.66 20.77 16 17 O -0.56 -25.46 16.43 -4.34 -0.07 -25.53 16 18 C -0.07 -1.97 6.78 24.07 0.16 -1.81 16 19 C -0.14 -3.50 10.63 22.39 0.24 -3.26 16 20 C -0.17 -3.05 10.77 22.07 0.24 -2.81 16 21 C -0.02 -0.31 6.68 24.97 0.17 -0.14 16 22 C 0.20 0.79 6.98 85.63 0.60 1.39 16 23 N -0.30 -3.21 3.43 -351.47 -1.21 -4.42 16 24 C -0.02 -0.14 11.57 83.49 0.97 0.82 16 25 C -0.07 -0.86 12.05 83.73 1.01 0.15 16 26 N -0.32 -6.96 12.41 -58.26 -0.72 -7.68 16 27 N -0.12 -2.49 12.92 37.02 0.48 -2.02 16 28 O -0.14 -2.71 7.26 -5.11 -0.04 -2.74 16 29 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.04 1.42 8.00 -2.39 -0.02 1.41 16 31 H 0.06 1.91 8.11 -2.38 -0.02 1.89 16 32 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 33 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 34 H 0.03 1.29 3.24 -2.39 -0.01 1.28 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.12 2.61 8.07 -2.38 -0.02 2.59 16 38 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.22 8.03 -2.39 -0.02 1.20 16 41 H 0.09 1.30 5.39 -2.39 -0.01 1.29 16 42 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.17 -0.84 8.07 -2.39 -0.02 -0.86 16 45 H 0.16 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.24 -1.19 8.06 -2.91 -0.02 -1.22 16 47 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -95.64 395.79 6.11 -89.53 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 0.92 Total: 3.36 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 8.95 Total: 12.97 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -5.39 Total: -127.71 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.11 Total: -28.27 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.73 Total: 50.12 kcal Total: -95.64 6.11 -89.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724851173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.914 kcal (2) G-P(sol) polarization free energy of solvation -95.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds