Wall clock time and date at job start Wed Apr 1 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34264 * 125.75124 * 2 1 4 4 C 1.38036 * 107.41655 * 179.73823 * 3 2 1 5 5 C 1.47430 * 126.41596 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99813 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00215 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00082 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47442 * 180.02562 * 8 7 5 10 10 H 1.09006 * 115.51647 * 29.57940 * 9 8 7 11 11 C 1.53002 * 117.44793 * 244.23160 * 9 8 7 12 12 H 1.08997 * 119.52370 * 4.09353 * 11 9 8 13 13 C 1.54377 * 118.12669 * 160.68153 * 11 9 8 14 14 N 1.48563 * 104.59631 * 87.23482 * 13 11 9 15 15 C 1.46897 * 110.99910 * 200.96083 * 14 13 11 16 16 C 1.50700 * 109.46958 * 169.99721 * 15 14 13 17 17 O 1.21292 * 120.00189 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99824 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99635 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99684 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99720 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99988 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99937 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46905 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47281 * 119.99865 * 23 21 19 26 26 H 1.48502 * 109.46741 * 239.99836 * 23 21 19 27 27 C 1.48564 * 104.21597 * 320.51420 * 14 13 11 28 28 C 1.52993 * 117.44822 * 175.00041 * 9 8 7 29 29 H 1.08998 * 119.52820 * 355.91037 * 28 9 8 30 30 C 1.41294 * 107.17120 * 359.97438 * 4 3 2 31 31 N 1.30440 * 108.02337 * 0.02562 * 30 4 3 32 32 H 1.09005 * 109.46967 * 90.00308 * 1 2 3 33 33 H 1.09001 * 109.47019 * 210.00203 * 1 2 3 34 34 H 1.08992 * 109.47633 * 330.00078 * 1 2 3 35 35 H 1.07998 * 126.29100 * 359.73741 * 3 2 1 36 36 H 0.97006 * 119.99684 * 0.02562 * 7 5 4 37 37 H 1.09003 * 109.47488 * 300.00495 * 8 7 5 38 38 H 1.09005 * 109.46987 * 60.00392 * 8 7 5 39 39 H 1.09005 * 110.41275 * 206.00721 * 13 11 9 40 40 H 1.08998 * 110.41651 * 328.44873 * 13 11 9 41 41 H 1.09008 * 109.46853 * 289.98768 * 15 14 13 42 42 H 1.08994 * 109.47841 * 49.99450 * 15 14 13 43 43 H 0.96991 * 120.00197 * 359.97438 * 18 16 15 44 44 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 45 45 H 1.09004 * 110.40928 * 280.70490 * 27 14 13 46 46 H 1.08997 * 110.41376 * 158.26711 * 27 14 13 47 47 H 1.08003 * 125.98909 * 179.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5597 0.6554 0.0060 5 6 4.7637 1.5063 0.0077 6 8 4.6524 2.7173 0.0031 7 7 5.9877 0.9421 0.0143 8 6 7.1840 1.7876 0.0154 9 6 8.4330 0.9040 0.0227 10 1 8.3240 -0.0673 -0.4599 11 6 9.3455 0.9829 1.2483 12 1 9.0534 1.6019 2.0965 13 6 10.3286 -0.1805 1.4998 14 7 11.5404 0.1777 0.7185 15 6 12.3594 -1.0102 0.4432 16 6 13.4381 -0.6577 -0.5484 17 8 13.5166 0.4718 -0.9834 18 7 14.3158 -1.5977 -0.9520 19 6 15.2968 -1.2772 -1.8545 20 1 15.3665 -0.2714 -2.2417 21 6 16.2012 -2.2463 -2.2709 22 7 16.1165 -3.4700 -1.7993 23 14 17.5383 -1.8094 -3.5001 24 1 17.4185 -0.3772 -3.8735 25 1 18.8702 -2.0527 -2.8900 26 1 17.3888 -2.6514 -4.7142 27 6 11.0048 0.7584 -0.5397 28 6 9.7903 1.6005 -0.0935 29 1 9.8293 2.6794 -0.2440 30 6 3.5310 -0.7572 0.0103 31 7 2.2827 -1.1355 0.0064 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8899 0.5138 35 1 1.9165 2.1170 -0.0040 36 1 6.0764 -0.0239 0.0176 37 1 7.1874 2.4136 -0.8770 38 1 7.1809 2.4203 0.9030 39 1 10.5682 -0.2532 2.5607 40 1 9.9074 -1.1189 1.1392 41 1 12.8170 -1.3586 1.3692 42 1 11.7297 -1.7981 0.0302 43 1 14.2533 -2.5009 -0.6039 44 1 16.7477 -4.1467 -2.0903 45 1 10.6893 -0.0331 -1.2196 46 1 11.7533 1.3926 -1.0146 47 1 4.3918 -1.4095 0.0150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725294642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:41 Heat of formation + Delta-G solvation = 54.056155 kcal Electronic energy + Delta-G solvation = -28669.220399 eV Core-core repulsion = 24469.177327 eV Total energy + Delta-G solvation = -4200.043073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.79436 -40.19491 -39.24286 -38.00718 -35.41957 -34.18172 -33.89103 -33.32553 -31.27022 -30.85669 -28.89225 -28.17347 -27.57918 -26.16293 -24.43378 -22.98371 -21.81602 -21.37555 -20.92164 -20.27079 -20.00856 -19.14703 -18.35039 -17.83588 -16.48349 -16.20053 -16.16332 -15.90355 -15.43846 -15.31874 -15.02523 -14.97440 -14.53932 -14.23753 -13.95784 -13.76756 -13.53668 -13.47187 -13.40206 -13.15344 -13.07014 -12.95286 -12.61756 -12.10754 -11.84119 -11.56495 -11.54798 -11.38218 -11.20903 -11.02687 -10.94949 -10.35170 -10.27124 -10.24047 -10.09398 -9.99103 -9.87415 -9.51293 -9.34852 -9.03237 -8.40327 -8.03348 -7.92723 -6.43315 -3.84140 1.10334 1.75047 1.84294 2.94090 3.15588 3.18762 3.26530 3.33656 3.52080 3.87641 3.93742 4.06491 4.22931 4.27295 4.41867 4.48174 4.54472 4.63662 4.70346 4.81447 4.95095 4.98233 5.00795 5.06341 5.18929 5.23866 5.27078 5.36056 5.46853 5.57113 5.67331 5.74291 5.79364 5.91028 5.92436 5.97982 6.14472 6.23315 6.25300 6.28417 6.29285 6.66119 7.03255 7.15764 7.26362 7.30583 7.54277 8.03888 8.04715 8.59743 9.16479 9.52073 10.03528 10.74381 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.001541 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.403925 B =18160.853040 C =18666.518728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.365 5.365 3 C 0.129 3.871 4 C -0.294 4.294 5 C 0.595 3.405 6 O -0.552 6.552 7 N -0.723 5.723 8 C 0.157 3.843 9 C -0.145 4.145 10 H 0.105 0.895 11 C -0.157 4.157 12 H 0.117 0.883 13 C 0.058 3.942 14 N -0.488 5.488 15 C 0.034 3.966 16 C 0.442 3.558 17 O -0.580 6.580 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.064 3.936 28 C -0.144 4.144 29 H 0.119 0.881 30 C 0.083 3.917 31 N -0.297 5.297 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.189 0.811 36 H 0.400 0.600 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.037 0.963 46 H 0.121 0.879 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.667 3.720 6.221 30.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.023 4.023 4 C -0.309 4.309 5 C 0.383 3.617 6 O -0.431 6.431 7 N -0.374 5.374 8 C 0.033 3.967 9 C -0.164 4.164 10 H 0.123 0.877 11 C -0.176 4.176 12 H 0.135 0.865 13 C -0.070 4.070 14 N -0.212 5.212 15 C -0.098 4.098 16 C 0.227 3.773 17 O -0.465 6.465 18 N -0.198 5.198 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.063 4.063 28 C -0.163 4.163 29 H 0.137 0.863 30 C -0.105 4.105 31 N -0.117 5.117 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.206 0.794 36 H 0.235 0.765 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.139 0.861 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -30.145 4.536 6.169 31.102 hybrid contribution 0.766 -1.004 -0.748 1.467 sum -29.379 3.532 5.421 30.083 Atomic orbital electron populations 1.22023 0.73305 1.05118 1.04067 1.48455 1.07353 1.03852 1.54688 1.22997 0.90104 0.93797 0.95406 1.20255 0.93498 0.93533 1.23642 1.17190 0.82145 0.86852 0.75502 1.90783 1.86918 1.14186 1.51189 1.45731 1.05268 1.10444 1.75922 1.20805 0.81156 0.92012 1.02691 1.22659 0.90820 1.00873 1.02022 0.87662 1.23556 1.00751 1.01116 0.92157 0.86478 1.22698 0.89479 0.95035 0.99777 1.65411 1.15350 1.24999 1.15441 1.22091 0.95865 0.91822 0.99984 1.19700 0.85215 0.86356 0.85989 1.90451 1.74851 1.20891 1.60291 1.41857 1.27052 1.11364 1.39528 1.19761 1.06223 0.98123 1.18742 0.87795 1.25265 0.99014 0.94885 0.98741 1.69622 1.38055 1.02250 1.44309 0.85800 0.80050 0.78844 0.79655 1.19185 1.20730 1.20787 1.22870 0.94396 0.97809 0.91219 1.23631 0.92277 0.99926 1.00474 0.86308 1.24102 0.95415 0.93890 0.97123 1.77211 1.01959 1.07812 1.24727 0.90068 0.88738 0.88903 0.79389 0.76536 0.90657 0.90970 0.89761 0.93941 0.89060 0.93343 0.77457 0.91908 0.94456 0.86118 0.79238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.44 59.85 0.68 0.92 16 2 N -0.36 -2.50 3.98 -67.60 -0.27 -2.77 16 3 C 0.13 0.94 11.30 -16.56 -0.19 0.76 16 4 C -0.29 -2.60 6.13 -105.07 -0.64 -3.24 16 5 C 0.60 6.35 7.81 -12.52 -0.10 6.25 16 6 O -0.55 -7.80 16.90 5.27 0.09 -7.71 16 7 N -0.72 -6.27 5.55 -61.38 -0.34 -6.61 16 8 C 0.16 1.50 5.95 -4.05 -0.02 1.48 16 9 C -0.14 -1.44 5.39 -90.62 -0.49 -1.93 16 10 H 0.11 1.01 8.04 -51.93 -0.42 0.59 16 11 C -0.16 -1.75 6.74 -89.24 -0.60 -2.35 16 12 H 0.12 1.19 8.12 -51.93 -0.42 0.77 16 13 C 0.06 0.73 6.30 -2.18 -0.01 0.71 16 14 N -0.49 -8.14 5.34 -231.41 -1.23 -9.37 16 15 C 0.03 0.61 5.55 -4.98 -0.03 0.58 16 16 C 0.44 10.29 7.50 -10.98 -0.08 10.21 16 17 O -0.58 -15.25 13.24 5.55 0.07 -15.17 16 18 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 C 0.06 1.06 5.11 -2.18 -0.01 1.05 16 28 C -0.14 -1.82 6.84 -89.24 -0.61 -2.43 16 29 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 30 C 0.08 0.64 11.50 -16.98 -0.20 0.45 16 31 N -0.30 -2.65 12.50 30.86 0.39 -2.27 16 32 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 33 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.40 2.50 7.36 -40.82 -0.30 2.20 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.50 7.82 -51.93 -0.41 0.09 16 41 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 42 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 43 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 46 H 0.12 2.41 6.05 -51.93 -0.31 2.10 16 47 H 0.19 0.88 7.50 -52.48 -0.39 0.48 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -35.62 396.56 -8.92 -44.54 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.70 Total: 10.70 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.54 Total: 4.56 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.79 Total: -58.79 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.16 Total: -22.88 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.62 -8.92 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725294642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.594 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds