Wall clock time and date at job start Wed Apr 1 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34264 * 125.75124 * 2 1 4 4 C 1.38036 * 107.41655 * 179.73823 * 3 2 1 5 5 C 1.47430 * 126.41596 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99813 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00215 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00082 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47442 * 180.02562 * 8 7 5 10 10 H 1.09006 * 115.51647 * 29.57940 * 9 8 7 11 11 C 1.53002 * 117.44793 * 244.23160 * 9 8 7 12 12 H 1.08997 * 119.52370 * 4.09353 * 11 9 8 13 13 C 1.54377 * 118.12669 * 160.68153 * 11 9 8 14 14 N 1.48563 * 104.59631 * 87.23482 * 13 11 9 15 15 C 1.46897 * 110.99910 * 200.96083 * 14 13 11 16 16 C 1.50700 * 109.46958 * 169.99721 * 15 14 13 17 17 O 1.21292 * 120.00189 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99824 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99635 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99684 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99720 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99988 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99937 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46905 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47281 * 119.99865 * 23 21 19 26 26 H 1.48502 * 109.46741 * 239.99836 * 23 21 19 27 27 C 1.48564 * 104.21597 * 320.51420 * 14 13 11 28 28 C 1.52993 * 117.44822 * 175.00041 * 9 8 7 29 29 H 1.08998 * 119.52820 * 355.91037 * 28 9 8 30 30 C 1.41294 * 107.17120 * 359.97438 * 4 3 2 31 31 N 1.30440 * 108.02337 * 0.02562 * 30 4 3 32 32 H 1.09005 * 109.46967 * 90.00308 * 1 2 3 33 33 H 1.09001 * 109.47019 * 210.00203 * 1 2 3 34 34 H 1.08992 * 109.47633 * 330.00078 * 1 2 3 35 35 H 1.07998 * 126.29100 * 359.73741 * 3 2 1 36 36 H 0.97006 * 119.99684 * 0.02562 * 7 5 4 37 37 H 1.09003 * 109.47488 * 300.00495 * 8 7 5 38 38 H 1.09005 * 109.46987 * 60.00392 * 8 7 5 39 39 H 1.09005 * 110.41275 * 206.00721 * 13 11 9 40 40 H 1.08998 * 110.41651 * 328.44873 * 13 11 9 41 41 H 1.09008 * 109.46853 * 289.98768 * 15 14 13 42 42 H 1.08994 * 109.47841 * 49.99450 * 15 14 13 43 43 H 0.96991 * 120.00197 * 359.97438 * 18 16 15 44 44 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 45 45 H 1.09004 * 110.40928 * 280.70490 * 27 14 13 46 46 H 1.08997 * 110.41376 * 158.26711 * 27 14 13 47 47 H 1.08003 * 125.98909 * 179.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5597 0.6554 0.0060 5 6 4.7637 1.5063 0.0077 6 8 4.6524 2.7173 0.0031 7 7 5.9877 0.9421 0.0143 8 6 7.1840 1.7876 0.0154 9 6 8.4330 0.9040 0.0227 10 1 8.3240 -0.0673 -0.4599 11 6 9.3455 0.9829 1.2483 12 1 9.0534 1.6019 2.0965 13 6 10.3286 -0.1805 1.4998 14 7 11.5404 0.1777 0.7185 15 6 12.3594 -1.0102 0.4432 16 6 13.4381 -0.6577 -0.5484 17 8 13.5166 0.4718 -0.9834 18 7 14.3158 -1.5977 -0.9520 19 6 15.2968 -1.2772 -1.8545 20 1 15.3665 -0.2714 -2.2417 21 6 16.2012 -2.2463 -2.2709 22 7 16.1165 -3.4700 -1.7993 23 14 17.5383 -1.8094 -3.5001 24 1 17.4185 -0.3772 -3.8735 25 1 18.8702 -2.0527 -2.8900 26 1 17.3888 -2.6514 -4.7142 27 6 11.0048 0.7584 -0.5397 28 6 9.7903 1.6005 -0.0935 29 1 9.8293 2.6794 -0.2440 30 6 3.5310 -0.7572 0.0103 31 7 2.2827 -1.1355 0.0064 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8899 0.5138 35 1 1.9165 2.1170 -0.0040 36 1 6.0764 -0.0239 0.0176 37 1 7.1874 2.4136 -0.8770 38 1 7.1809 2.4203 0.9030 39 1 10.5682 -0.2532 2.5607 40 1 9.9074 -1.1189 1.1392 41 1 12.8170 -1.3586 1.3692 42 1 11.7297 -1.7981 0.0302 43 1 14.2533 -2.5009 -0.6039 44 1 16.7477 -4.1467 -2.0903 45 1 10.6893 -0.0331 -1.2196 46 1 11.7533 1.3926 -1.0146 47 1 4.3918 -1.4095 0.0150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725294642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:37 Heat of formation + Delta-G solvation = 26.245087 kcal Electronic energy + Delta-G solvation = -28670.426378 eV Core-core repulsion = 24469.177327 eV Total energy + Delta-G solvation = -4201.249051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -42.34249 -41.31016 -40.19975 -39.64406 -36.53920 -35.86461 -34.76525 -34.17090 -33.27553 -31.47702 -29.94402 -29.29052 -28.37614 -27.24546 -26.06316 -23.76048 -22.87936 -21.95176 -21.78359 -21.32814 -20.89625 -20.80705 -19.82887 -18.97761 -17.67539 -17.21622 -16.96126 -16.70038 -16.60255 -16.48519 -16.23652 -15.97076 -15.78921 -15.50001 -15.27212 -14.89478 -14.72039 -14.39385 -14.34952 -13.90392 -13.85192 -13.55235 -13.50002 -13.44492 -13.31155 -13.04468 -12.99433 -12.55118 -12.40462 -12.22849 -12.19233 -12.10168 -12.07190 -11.48561 -11.13842 -10.97014 -10.79081 -10.60239 -10.18795 -10.11615 -9.99894 -9.63411 -9.32208 -8.46791 -5.95219 0.53246 1.15546 1.36438 1.42099 1.44278 1.56075 2.04081 2.19475 2.28487 2.46413 2.59762 2.91184 3.20335 3.31955 3.47696 3.52829 3.73279 3.80657 4.01729 4.11173 4.15603 4.18054 4.18622 4.28074 4.33937 4.42225 4.45475 4.50821 4.57016 4.61367 4.64255 4.70448 4.72109 4.74915 4.84471 5.02121 5.16604 5.26074 5.34376 5.38711 5.42143 5.50115 5.86113 5.86249 5.92212 6.11240 6.48167 6.60730 6.64391 7.13196 7.29716 7.55631 8.11669 8.70803 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.001541 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.403925 B =18160.853040 C =18666.518728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.363 5.363 3 C 0.131 3.869 4 C -0.318 4.318 5 C 0.596 3.404 6 O -0.594 6.594 7 N -0.712 5.712 8 C 0.162 3.838 9 C -0.114 4.114 10 H 0.117 0.883 11 C -0.144 4.144 12 H 0.133 0.867 13 C 0.058 3.942 14 N -0.509 5.509 15 C 0.046 3.954 16 C 0.438 3.562 17 O -0.615 6.615 18 N -0.572 5.572 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.067 3.933 28 C -0.163 4.163 29 H 0.120 0.880 30 C 0.086 3.914 31 N -0.329 5.329 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.208 0.792 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.030 0.970 46 H 0.076 0.924 47 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.423 2.744 7.041 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.141 5.141 3 C -0.022 4.022 4 C -0.333 4.333 5 C 0.385 3.615 6 O -0.476 6.476 7 N -0.363 5.363 8 C 0.039 3.961 9 C -0.133 4.133 10 H 0.134 0.866 11 C -0.163 4.163 12 H 0.151 0.849 13 C -0.069 4.069 14 N -0.234 5.234 15 C -0.085 4.085 16 C 0.226 3.774 17 O -0.501 6.501 18 N -0.209 5.209 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.060 4.060 28 C -0.182 4.182 29 H 0.138 0.862 30 C -0.101 4.101 31 N -0.149 5.149 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.224 0.776 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -31.928 3.496 7.009 32.875 hybrid contribution 1.220 -0.666 -0.985 1.703 sum -30.708 2.830 6.024 31.421 Atomic orbital electron populations 1.22394 0.71042 1.06633 1.05321 1.48797 1.08640 1.03159 1.53480 1.23360 0.89968 0.94732 0.94122 1.20239 0.93381 0.93939 1.25769 1.17442 0.82936 0.86461 0.74692 1.90757 1.87502 1.15925 1.53390 1.45599 1.04498 1.11107 1.75093 1.20667 0.81265 0.91929 1.02283 1.22544 0.89416 1.00683 1.00669 0.86555 1.23644 1.00235 1.00225 0.92171 0.84899 1.22799 0.88046 0.96162 0.99919 1.65389 1.17461 1.24858 1.15702 1.21972 0.94619 0.92892 0.99017 1.20748 0.85426 0.85449 0.85816 1.90452 1.75778 1.22403 1.61485 1.41919 1.27342 1.11907 1.39768 1.19696 1.08248 0.97586 1.20655 0.90326 1.26013 1.00493 0.94637 1.00002 1.69677 1.38749 1.02756 1.44893 0.84883 0.77578 0.78219 0.77730 1.19859 1.19632 1.19609 1.22590 0.94806 0.97369 0.91230 1.23435 0.92593 0.99700 1.02487 0.86219 1.24490 0.95914 0.93727 0.95989 1.77163 1.02644 1.09182 1.25923 0.88912 0.88393 0.86301 0.77574 0.74927 0.91529 0.91102 0.88211 0.92301 0.87074 0.91129 0.76997 0.91312 0.95210 0.90572 0.76857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.44 127.77 1.46 1.71 16 2 N -0.36 -4.37 3.98 -367.79 -1.46 -5.84 16 3 C 0.13 1.74 11.30 84.27 0.95 2.69 16 4 C -0.32 -5.21 6.13 -20.15 -0.12 -5.33 16 5 C 0.60 12.06 7.81 86.66 0.68 12.74 16 6 O -0.59 -16.54 16.90 -4.05 -0.07 -16.61 16 7 N -0.71 -11.04 5.55 -466.37 -2.59 -13.63 16 8 C 0.16 2.85 5.95 86.38 0.51 3.36 16 9 C -0.11 -2.02 5.39 -10.80 -0.06 -2.08 16 10 H 0.12 1.87 8.04 -2.38 -0.02 1.85 16 11 C -0.14 -2.84 6.74 -9.90 -0.07 -2.91 16 12 H 0.13 2.27 8.12 -2.39 -0.02 2.25 16 13 C 0.06 1.28 6.30 86.45 0.54 1.83 16 14 N -0.51 -16.52 5.34 -886.03 -4.73 -21.25 16 15 C 0.05 1.60 5.55 85.56 0.47 2.08 16 16 C 0.44 20.85 7.50 87.66 0.66 21.51 16 17 O -0.61 -33.74 13.24 -3.07 -0.04 -33.78 16 18 N -0.57 -29.34 5.29 -306.98 -1.62 -30.96 16 19 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 22 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 23 Si 0.99 43.01 29.55 68.60 2.03 45.03 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 C 0.07 2.26 5.11 86.45 0.44 2.71 16 28 C -0.16 -4.00 6.84 -9.90 -0.07 -4.07 16 29 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 30 C 0.09 1.19 11.50 85.65 0.99 2.18 16 31 N -0.33 -5.40 12.50 -56.27 -0.70 -6.10 16 32 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.12 -0.29 8.14 -2.39 -0.02 -0.30 16 35 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.41 4.10 7.36 -92.70 -0.68 3.41 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.31 7.94 -2.38 -0.02 1.30 16 39 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.06 1.16 7.82 -2.39 -0.02 1.14 16 41 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 42 H 0.07 2.14 7.88 -2.39 -0.02 2.12 16 43 H 0.40 19.25 7.90 -92.72 -0.73 18.52 16 44 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 45 H 0.03 1.01 8.00 -2.38 -0.02 0.99 16 46 H 0.08 3.24 6.05 -2.39 -0.01 3.22 16 47 H 0.22 1.48 7.50 -2.91 -0.02 1.46 16 Total: -1.00 -79.50 396.56 -1.63 -81.13 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.39 Total: 33.01 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 7.67 Total: 18.18 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -10.82 Total: -126.97 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.11 Total: -50.38 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -79.50 -1.63 -81.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725294642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.373 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds