Wall clock time and date at job start Wed Apr 1 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35031 * 124.88653 * 2 1 4 4 C 1.35367 * 107.22852 * 179.97438 * 3 2 1 5 5 C 1.41504 * 105.50330 * 0.23916 * 4 3 2 6 6 C 1.47705 * 126.51517 * 179.75761 * 5 4 3 7 7 O 1.21573 * 120.00471 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99735 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00038 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47338 * 179.97438 * 9 8 6 11 11 H 1.09005 * 115.51265 * 330.42450 * 10 9 8 12 12 C 1.52996 * 117.44594 * 185.00127 * 10 9 8 13 13 H 1.08994 * 119.52496 * 4.09044 * 12 10 9 14 14 C 1.54378 * 118.13047 * 160.68553 * 12 10 9 15 15 N 1.48558 * 104.59295 * 87.22628 * 14 12 10 16 16 C 1.46906 * 111.00032 * 200.96183 * 15 14 12 17 17 C 1.50706 * 109.46866 * 285.42261 * 16 15 14 18 18 O 1.21291 * 120.00353 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99555 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99633 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00136 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00012 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46964 * 90.00451 * 24 22 20 26 26 H 1.48504 * 109.47095 * 210.00535 * 24 22 20 27 27 H 1.48503 * 109.46794 * 330.00271 * 24 22 20 28 28 C 1.48557 * 104.22525 * 320.51857 * 15 14 12 29 29 C 1.52998 * 117.44678 * 115.77103 * 10 9 8 30 30 H 1.09003 * 119.52053 * 355.90605 * 29 10 9 31 31 N 1.28472 * 124.88102 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47507 * 90.00394 * 1 2 3 33 33 H 1.09002 * 109.47226 * 210.00471 * 1 2 3 34 34 H 1.08994 * 109.47275 * 330.00354 * 1 2 3 35 35 H 1.07998 * 126.38653 * 359.93750 * 3 2 1 36 36 H 1.08002 * 127.24456 * 179.97438 * 4 3 2 37 37 H 0.97002 * 120.00187 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.46802 * 300.00379 * 9 8 6 39 39 H 1.09010 * 109.46708 * 59.99836 * 9 8 6 40 40 H 1.08992 * 110.41238 * 206.00785 * 14 12 10 41 41 H 1.08997 * 110.41048 * 328.45186 * 14 12 10 42 42 H 1.08999 * 109.47265 * 45.41902 * 16 15 14 43 43 H 1.08998 * 109.46970 * 165.42628 * 16 15 14 44 44 H 0.96998 * 120.00166 * 359.97438 * 19 17 16 45 45 H 0.96997 * 120.00638 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.40747 * 280.70329 * 28 15 14 47 47 H 1.08998 * 110.40974 * 158.26393 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1076 0.0000 4 6 3.5272 0.6970 0.0006 5 6 3.4740 -0.7170 -0.0048 6 6 4.6272 -1.6399 -0.0113 7 8 5.7597 -1.1978 -0.0121 8 7 4.4240 -2.9723 -0.0155 9 6 5.5678 -3.8877 -0.0214 10 6 5.0646 -5.3326 -0.0246 11 1 4.1036 -5.4961 0.4631 12 6 6.1104 -6.4437 0.0875 13 1 7.1585 -6.1822 0.2324 14 6 5.6399 -7.8434 0.5377 15 7 5.2238 -8.5201 -0.7177 16 6 4.3106 -9.6360 -0.4365 17 6 5.0911 -10.7927 0.1328 18 8 6.2902 -10.6971 0.2885 19 7 4.4569 -11.9337 0.4679 20 6 5.1670 -12.9861 0.9853 21 1 6.2346 -12.9007 1.1247 22 6 4.5131 -14.1623 1.3313 23 7 3.2141 -14.2661 1.1621 24 14 5.4806 -15.5960 2.0369 25 1 5.5289 -15.4801 3.5165 26 1 4.8195 -16.8718 1.6616 27 1 6.8624 -15.5760 1.4933 28 6 4.5400 -7.4560 -1.4967 29 6 5.3869 -6.1889 -1.2508 30 1 5.8964 -5.7376 -2.1022 31 7 2.1997 -1.0539 0.0005 32 1 -0.3634 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.8906 2.1305 -0.0009 36 1 4.4108 1.3180 0.0004 37 1 3.5204 -3.3251 -0.0137 38 1 6.1703 -3.7104 -0.9122 39 1 6.1747 -3.7166 0.8678 40 1 6.4590 -8.3865 1.0089 41 1 4.7955 -7.7588 1.2217 42 1 3.5574 -9.3165 0.2837 43 1 3.8218 -9.9469 -1.3598 44 1 3.4980 -12.0102 0.3430 45 1 2.7576 -15.0872 1.4033 46 1 3.5236 -7.3108 -1.1310 47 1 4.5311 -7.7074 -2.5572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725319682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:05 Heat of formation + Delta-G solvation = 57.253400 kcal Electronic energy + Delta-G solvation = -28641.714283 eV Core-core repulsion = 24441.809853 eV Total energy + Delta-G solvation = -4199.904430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -43.04817 -40.23768 -39.38695 -37.94963 -35.48371 -34.09340 -33.89237 -33.41774 -31.22742 -31.15959 -29.07039 -28.28523 -27.81834 -26.26079 -24.45258 -23.12705 -21.92203 -21.72339 -20.93000 -20.28356 -19.93164 -19.08248 -18.29139 -17.81568 -16.92640 -16.74819 -16.33096 -15.99448 -15.49310 -15.34540 -14.92735 -14.57245 -14.47505 -14.28810 -14.07813 -13.81017 -13.61359 -13.48158 -13.39454 -13.14424 -13.12667 -12.91294 -12.64252 -12.24029 -11.88542 -11.53355 -11.39000 -11.33777 -11.26960 -11.10591 -10.87270 -10.52352 -10.37402 -10.19611 -10.04583 -9.95026 -9.72547 -9.52018 -9.46768 -9.22028 -8.47512 -7.98414 -7.91776 -6.39076 -3.79705 1.20058 1.72572 1.98334 2.84179 3.14634 3.19742 3.28122 3.34341 3.48158 3.86938 3.93366 4.03058 4.23001 4.33103 4.37329 4.42912 4.48567 4.60379 4.76965 4.82639 4.93888 4.99479 5.06624 5.18778 5.25043 5.26776 5.29381 5.35141 5.41185 5.52050 5.62248 5.68379 5.79488 5.86929 5.90984 5.94924 6.11692 6.12988 6.21203 6.27447 6.30309 6.42714 7.09295 7.15776 7.22945 7.49440 7.57774 7.94642 8.09220 8.65132 9.21249 9.57658 10.09982 10.78831 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.001545 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.935770 B =18118.440279 C =18923.655479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.284 5.284 3 C -0.020 4.020 4 C -0.178 4.178 5 C -0.018 4.018 6 C 0.605 3.395 7 O -0.533 6.533 8 N -0.714 5.714 9 C 0.154 3.846 10 C -0.144 4.144 11 H 0.106 0.894 12 C -0.142 4.142 13 H 0.121 0.879 14 C 0.067 3.933 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.058 3.942 29 C -0.154 4.154 30 H 0.119 0.881 31 N -0.262 5.262 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.408 0.592 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.043 0.957 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 30.801 -3.419 32.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.162 4.162 4 C -0.206 4.206 5 C -0.178 4.178 6 C 0.389 3.611 7 O -0.408 6.408 8 N -0.365 5.365 9 C 0.031 3.969 10 C -0.163 4.163 11 H 0.124 0.876 12 C -0.162 4.162 13 H 0.139 0.861 14 C -0.061 4.061 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.069 4.069 29 C -0.173 4.173 30 H 0.137 0.863 31 N -0.098 5.098 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.200 0.800 36 H 0.181 0.819 37 H 0.243 0.757 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.328 29.808 -3.570 31.155 hybrid contribution -1.086 0.030 0.668 1.275 sum -9.414 29.838 -2.902 31.422 Atomic orbital electron populations 1.22216 0.72999 1.05644 1.04646 1.45426 1.07909 1.03119 1.50829 1.22895 0.90974 0.93809 1.08540 1.21811 0.97419 0.93505 1.07889 1.21930 0.90668 0.94281 1.10882 1.16854 0.86601 0.81361 0.76290 1.90810 1.22556 1.77160 1.50282 1.45827 1.10779 1.05306 1.74628 1.20865 0.87757 0.85399 1.02900 1.22648 1.00529 0.90978 1.02108 0.87570 1.23509 0.97866 0.93985 1.00801 0.86121 1.22678 1.00892 0.91015 0.91470 1.65287 1.34627 1.05699 1.15120 1.22057 0.94082 0.92710 1.00902 1.19699 0.88458 0.84167 0.84581 1.90514 1.14618 1.82445 1.58339 1.41859 1.10443 1.11920 1.56143 1.19702 0.94312 0.91148 1.37555 0.87927 1.25246 0.95795 0.99026 0.97911 1.69609 1.07814 1.28456 1.48614 0.85862 0.79534 0.79902 0.79018 1.20471 1.20962 1.19407 1.22668 0.94997 0.89372 0.99885 1.23569 1.03224 0.98344 0.92188 0.86320 1.73509 1.02972 1.14257 1.19094 0.89534 0.88362 0.88496 0.79960 0.81912 0.75710 0.90719 0.90434 0.87979 0.94167 0.93187 0.89255 0.77554 0.91942 0.93913 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.16 11.31 59.85 0.68 0.83 16 2 N -0.28 -1.82 3.70 -68.13 -0.25 -2.07 16 3 C -0.02 -0.11 11.46 -17.17 -0.20 -0.31 16 4 C -0.18 -1.53 10.81 -39.36 -0.43 -1.95 16 5 C -0.02 -0.19 7.13 -82.77 -0.59 -0.78 16 6 C 0.60 7.26 7.82 -12.39 -0.10 7.16 16 7 O -0.53 -7.95 16.93 5.30 0.09 -7.86 16 8 N -0.71 -7.15 5.55 -61.29 -0.34 -7.49 16 9 C 0.15 1.54 5.95 -4.04 -0.02 1.51 16 10 C -0.14 -1.45 5.39 -90.62 -0.49 -1.94 16 11 H 0.11 1.04 8.04 -51.93 -0.42 0.62 16 12 C -0.14 -1.77 6.84 -89.24 -0.61 -2.38 16 13 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.07 1.06 5.73 -2.18 -0.01 1.05 16 15 N -0.48 -8.19 4.98 -231.42 -1.15 -9.34 16 16 C 0.03 0.62 5.32 -4.97 -0.03 0.59 16 17 C 0.45 10.66 7.63 -10.98 -0.08 10.58 16 18 O -0.58 -15.79 14.80 5.55 0.08 -15.71 16 19 N -0.57 -14.49 5.29 -10.96 -0.06 -14.55 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 24 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 28 C 0.06 0.75 6.26 -2.19 -0.01 0.74 16 29 C -0.15 -1.75 6.74 -89.24 -0.60 -2.36 16 30 H 0.12 1.24 8.12 -51.93 -0.42 0.82 16 31 N -0.26 -2.44 11.67 33.42 0.39 -2.05 16 32 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.10 -0.07 8.13 -51.93 -0.42 -0.50 16 35 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 36 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.41 3.53 8.13 -40.82 -0.33 3.20 16 38 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 39 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.10 1.91 7.24 -51.93 -0.38 1.54 16 41 H 0.04 0.61 7.75 -51.93 -0.40 0.21 16 42 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 43 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 44 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -36.17 399.77 -9.06 -45.24 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.81 Total: 10.88 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.73 Total: 4.72 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.69 Total: -59.48 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.17 Total: -23.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.17 -9.06 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725319682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.489 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds