Wall clock time and date at job start Wed Apr 1 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35031 * 124.88653 * 2 1 4 4 C 1.35367 * 107.22852 * 179.97438 * 3 2 1 5 5 C 1.41504 * 105.50330 * 0.23916 * 4 3 2 6 6 C 1.47705 * 126.51517 * 179.75761 * 5 4 3 7 7 O 1.21573 * 120.00471 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99735 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00038 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47338 * 179.97438 * 9 8 6 11 11 H 1.09005 * 115.51265 * 330.42450 * 10 9 8 12 12 C 1.52996 * 117.44594 * 185.00127 * 10 9 8 13 13 H 1.08994 * 119.52496 * 4.09044 * 12 10 9 14 14 C 1.54378 * 118.13047 * 160.68553 * 12 10 9 15 15 N 1.48558 * 104.59295 * 87.22628 * 14 12 10 16 16 C 1.46906 * 111.00032 * 200.96183 * 15 14 12 17 17 C 1.50706 * 109.46866 * 285.42261 * 16 15 14 18 18 O 1.21291 * 120.00353 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99555 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99633 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00136 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00012 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46964 * 90.00451 * 24 22 20 26 26 H 1.48504 * 109.47095 * 210.00535 * 24 22 20 27 27 H 1.48503 * 109.46794 * 330.00271 * 24 22 20 28 28 C 1.48557 * 104.22525 * 320.51857 * 15 14 12 29 29 C 1.52998 * 117.44678 * 115.77103 * 10 9 8 30 30 H 1.09003 * 119.52053 * 355.90605 * 29 10 9 31 31 N 1.28472 * 124.88102 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47507 * 90.00394 * 1 2 3 33 33 H 1.09002 * 109.47226 * 210.00471 * 1 2 3 34 34 H 1.08994 * 109.47275 * 330.00354 * 1 2 3 35 35 H 1.07998 * 126.38653 * 359.93750 * 3 2 1 36 36 H 1.08002 * 127.24456 * 179.97438 * 4 3 2 37 37 H 0.97002 * 120.00187 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.46802 * 300.00379 * 9 8 6 39 39 H 1.09010 * 109.46708 * 59.99836 * 9 8 6 40 40 H 1.08992 * 110.41238 * 206.00785 * 14 12 10 41 41 H 1.08997 * 110.41048 * 328.45186 * 14 12 10 42 42 H 1.08999 * 109.47265 * 45.41902 * 16 15 14 43 43 H 1.08998 * 109.46970 * 165.42628 * 16 15 14 44 44 H 0.96998 * 120.00166 * 359.97438 * 19 17 16 45 45 H 0.96997 * 120.00638 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.40747 * 280.70329 * 28 15 14 47 47 H 1.08998 * 110.40974 * 158.26393 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1076 0.0000 4 6 3.5272 0.6970 0.0006 5 6 3.4740 -0.7170 -0.0048 6 6 4.6272 -1.6399 -0.0113 7 8 5.7597 -1.1978 -0.0121 8 7 4.4240 -2.9723 -0.0155 9 6 5.5678 -3.8877 -0.0214 10 6 5.0646 -5.3326 -0.0246 11 1 4.1036 -5.4961 0.4631 12 6 6.1104 -6.4437 0.0875 13 1 7.1585 -6.1822 0.2324 14 6 5.6399 -7.8434 0.5377 15 7 5.2238 -8.5201 -0.7177 16 6 4.3106 -9.6360 -0.4365 17 6 5.0911 -10.7927 0.1328 18 8 6.2902 -10.6971 0.2885 19 7 4.4569 -11.9337 0.4679 20 6 5.1670 -12.9861 0.9853 21 1 6.2346 -12.9007 1.1247 22 6 4.5131 -14.1623 1.3313 23 7 3.2141 -14.2661 1.1621 24 14 5.4806 -15.5960 2.0369 25 1 5.5289 -15.4801 3.5165 26 1 4.8195 -16.8718 1.6616 27 1 6.8624 -15.5760 1.4933 28 6 4.5400 -7.4560 -1.4967 29 6 5.3869 -6.1889 -1.2508 30 1 5.8964 -5.7376 -2.1022 31 7 2.1997 -1.0539 0.0005 32 1 -0.3634 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.8906 2.1305 -0.0009 36 1 4.4108 1.3180 0.0004 37 1 3.5204 -3.3251 -0.0137 38 1 6.1703 -3.7104 -0.9122 39 1 6.1747 -3.7166 0.8678 40 1 6.4590 -8.3865 1.0089 41 1 4.7955 -7.7588 1.2217 42 1 3.5574 -9.3165 0.2837 43 1 3.8218 -9.9469 -1.3598 44 1 3.4980 -12.0102 0.3430 45 1 2.7576 -15.0872 1.4033 46 1 3.5236 -7.3108 -1.1310 47 1 4.5311 -7.7074 -2.5572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725319682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:58 Heat of formation + Delta-G solvation = 29.019585 kcal Electronic energy + Delta-G solvation = -28642.938593 eV Core-core repulsion = 24441.809853 eV Total energy + Delta-G solvation = -4201.128740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.58173 -41.32171 -40.39731 -39.72421 -36.60530 -35.88714 -34.79518 -34.26728 -33.24822 -31.74334 -30.11030 -29.38988 -28.65832 -27.38795 -26.12857 -23.94081 -22.87131 -22.43674 -21.83605 -21.34644 -20.87844 -20.73646 -19.85296 -18.90137 -17.76964 -17.50733 -17.27832 -17.22055 -16.62646 -16.58308 -16.19888 -16.15437 -15.82831 -15.33959 -15.14931 -14.83600 -14.70718 -14.49548 -14.34230 -14.07706 -13.88108 -13.60999 -13.50135 -13.42989 -13.33769 -13.16947 -12.96020 -12.53067 -12.42116 -12.29202 -12.18725 -12.11025 -11.96033 -11.49100 -11.47126 -11.01523 -10.92254 -10.33754 -10.31456 -10.14303 -10.00282 -9.94141 -9.33128 -8.46202 -5.94815 0.50615 1.20597 1.37888 1.41431 1.54312 1.59754 2.05778 2.07113 2.28457 2.33926 2.54637 2.83146 3.20367 3.28670 3.36767 3.46108 3.66227 3.92087 4.01447 4.03847 4.12013 4.13159 4.23532 4.29193 4.41465 4.43015 4.47074 4.49675 4.54407 4.57394 4.67206 4.71787 4.73599 4.76478 4.80870 4.94280 5.03931 5.18388 5.24471 5.31882 5.38933 5.41182 5.84233 5.89223 5.89420 6.08881 6.38528 6.61618 6.88675 7.11932 7.13782 7.57173 8.13732 8.71263 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.001545 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.935770 B =18118.440279 C =18923.655479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.280 5.280 3 C 0.001 3.999 4 C -0.207 4.207 5 C -0.049 4.049 6 C 0.601 3.399 7 O -0.573 6.573 8 N -0.704 5.704 9 C 0.158 3.842 10 C -0.114 4.114 11 H 0.117 0.883 12 C -0.156 4.156 13 H 0.123 0.877 14 C 0.068 3.932 15 N -0.511 5.511 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.059 3.941 29 C -0.147 4.147 30 H 0.132 0.868 31 N -0.277 5.277 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.227 0.773 36 H 0.162 0.838 37 H 0.415 0.585 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.061 0.939 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 32.450 -3.848 34.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.069 5.069 3 C -0.142 4.142 4 C -0.235 4.235 5 C -0.208 4.208 6 C 0.387 3.613 7 O -0.451 6.451 8 N -0.355 5.355 9 C 0.035 3.965 10 C -0.132 4.132 11 H 0.135 0.865 12 C -0.175 4.175 13 H 0.141 0.859 14 C -0.060 4.060 15 N -0.235 5.235 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.067 4.067 29 C -0.166 4.166 30 H 0.149 0.851 31 N -0.115 5.115 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.244 0.756 36 H 0.180 0.820 37 H 0.252 0.748 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.130 0.870 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.934 31.448 -4.009 33.535 hybrid contribution -0.378 -0.408 0.788 0.964 sum -11.312 31.040 -3.222 33.194 Atomic orbital electron populations 1.22643 0.70318 1.07330 1.06122 1.45930 1.09399 1.02683 1.48865 1.23490 0.89767 0.95305 1.05665 1.22037 0.99026 0.92926 1.09526 1.21843 0.90805 0.94885 1.13222 1.17152 0.86672 0.81920 0.75558 1.90774 1.24121 1.77858 1.52346 1.45744 1.11126 1.04839 1.73825 1.20786 0.87777 0.85251 1.02710 1.22513 0.99863 0.90101 1.00767 0.86498 1.23357 0.98698 0.93233 1.02233 0.85936 1.22518 0.99741 0.92361 0.91364 1.65214 1.35559 1.06825 1.15917 1.21904 0.93604 0.90926 1.01956 1.20783 0.88395 0.84918 0.83036 1.90486 1.16817 1.83323 1.59639 1.41922 1.10546 1.12182 1.56626 1.19653 0.93694 0.93007 1.39944 0.90475 1.26014 0.96805 1.00838 0.97546 1.69665 1.08666 1.29341 1.48470 0.84936 0.77918 0.77053 0.78466 1.19650 1.19442 1.19921 1.22737 0.95732 0.88478 0.99784 1.23643 1.02532 0.98047 0.92349 0.85062 1.73443 1.02639 1.15679 1.19780 0.88110 0.88349 0.85266 0.75631 0.82033 0.74780 0.90810 0.90882 0.92015 0.93652 0.91021 0.87043 0.77016 0.91316 0.92054 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.03 11.31 127.77 1.44 1.47 16 2 N -0.28 -2.89 3.70 -369.46 -1.37 -4.26 16 3 C 0.00 0.01 11.46 83.54 0.96 0.96 16 4 C -0.21 -3.41 10.81 22.41 0.24 -3.17 16 5 C -0.05 -1.03 7.13 42.46 0.30 -0.73 16 6 C 0.60 14.62 7.82 86.74 0.68 15.30 16 7 O -0.57 -17.68 16.93 -3.94 -0.07 -17.75 16 8 N -0.70 -13.66 5.55 -466.09 -2.59 -16.25 16 9 C 0.16 3.03 5.95 86.38 0.51 3.54 16 10 C -0.11 -2.11 5.39 -10.80 -0.06 -2.17 16 11 H 0.12 1.99 8.04 -2.38 -0.02 1.97 16 12 C -0.16 -3.79 6.84 -9.90 -0.07 -3.86 16 13 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 14 C 0.07 2.17 5.73 86.45 0.49 2.67 16 15 N -0.51 -16.97 4.98 -886.07 -4.41 -21.38 16 16 C 0.05 1.68 5.32 85.56 0.46 2.13 16 17 C 0.44 21.57 7.63 87.66 0.67 22.24 16 18 O -0.62 -35.24 14.80 -3.07 -0.05 -35.28 16 19 N -0.57 -30.04 5.29 -306.98 -1.62 -31.66 16 20 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 28 C 0.06 1.39 6.26 86.45 0.54 1.94 16 29 C -0.15 -3.06 6.74 -9.90 -0.07 -3.13 16 30 H 0.13 2.45 8.12 -2.39 -0.02 2.43 16 31 N -0.28 -4.82 11.67 -48.18 -0.56 -5.38 16 32 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.13 -0.77 8.13 -2.39 -0.02 -0.79 16 35 H 0.23 -0.23 8.06 -2.91 -0.02 -0.26 16 36 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.42 6.70 8.13 -92.71 -0.75 5.95 16 38 H 0.07 1.47 7.94 -2.39 -0.02 1.45 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.06 2.46 7.24 -2.39 -0.02 2.44 16 41 H 0.05 1.37 7.75 -2.39 -0.02 1.35 16 42 H 0.07 2.23 7.77 -2.39 -0.02 2.21 16 43 H 0.11 3.43 8.08 -2.39 -0.02 3.42 16 44 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 45 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.06 1.24 8.00 -2.39 -0.02 1.22 16 47 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -81.83 399.77 -1.43 -83.27 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.47 Total: 34.33 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 7.39 Total: 18.53 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -10.27 Total: -128.66 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -0.11 Total: -53.03 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -81.83 -1.43 -83.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725319682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.288 kcal (2) G-P(sol) polarization free energy of solvation -81.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds