Wall clock time and date at job start Wed Apr 1 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99847 * 2 1 4 4 C 1.52999 * 109.46650 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47406 * 62.16422 * 4 3 2 6 6 C 1.36943 * 120.00317 * 264.53844 * 5 4 3 7 7 H 1.08000 * 120.00236 * 141.85369 * 6 5 4 8 8 C 1.38814 * 119.99351 * 321.85650 * 6 5 4 9 9 N 1.31622 * 119.99784 * 160.77634 * 8 6 5 10 10 Si 1.86795 * 120.00212 * 340.77118 * 8 6 5 11 11 H 1.48508 * 109.46820 * 95.71947 * 10 8 6 12 12 H 1.48506 * 109.47305 * 215.71496 * 10 8 6 13 13 H 1.48497 * 109.47270 * 335.72014 * 10 8 6 14 14 C 1.46503 * 120.00448 * 84.53783 * 5 4 3 15 15 C 1.53001 * 109.47175 * 270.00471 * 14 5 4 16 16 N 1.46493 * 109.47520 * 179.97438 * 15 14 5 17 17 C 1.34780 * 120.00473 * 179.97438 * 16 15 14 18 18 O 1.21588 * 119.99558 * 359.97438 * 17 16 15 19 19 C 1.47527 * 120.00277 * 179.97438 * 17 16 15 20 20 C 1.39415 * 120.75561 * 321.15006 * 19 17 16 21 21 N 1.31914 * 121.01827 * 179.97438 * 20 19 17 22 22 C 1.31798 * 122.60071 * 359.97438 * 21 20 19 23 23 C 1.39442 * 120.63186 * 0.02562 * 22 21 20 24 24 N 1.35697 * 134.43763 * 180.02562 * 23 22 21 25 25 C 1.30130 * 109.50558 * 179.97438 * 24 23 22 26 26 N 1.36256 * 110.05790 * 0.02562 * 25 24 23 27 27 C 1.46497 * 126.29893 * 180.25786 * 26 25 24 28 28 C 1.36920 * 107.40323 * 359.97438 * 26 25 24 29 29 H 1.09004 * 109.47229 * 59.99735 * 1 2 3 30 30 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47180 * 299.99719 * 1 2 3 32 32 H 1.08995 * 109.46871 * 60.00342 * 3 2 1 33 33 H 1.09003 * 109.47197 * 299.99885 * 3 2 1 34 34 H 1.08995 * 109.47302 * 302.16223 * 4 3 2 35 35 H 1.09001 * 109.46736 * 182.16081 * 4 3 2 36 36 H 0.97001 * 120.00326 * 179.97438 * 9 8 6 37 37 H 1.08990 * 109.47553 * 150.00100 * 14 5 4 38 38 H 1.09004 * 109.46610 * 29.99625 * 14 5 4 39 39 H 1.09001 * 109.47250 * 59.98922 * 15 14 5 40 40 H 1.09008 * 109.46862 * 299.99849 * 15 14 5 41 41 H 0.97006 * 119.99920 * 359.97438 * 16 15 14 42 42 H 1.08003 * 119.49220 * 359.97240 * 20 19 17 43 43 H 1.07996 * 119.68744 * 179.97438 * 22 21 20 44 44 H 1.08003 * 124.97315 * 180.02562 * 25 24 23 45 45 H 1.08994 * 109.47416 * 265.63327 * 27 26 25 46 46 H 1.08997 * 109.47197 * 25.63429 * 27 26 25 47 47 H 1.09004 * 109.47092 * 145.62904 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9708 0.5033 -1.2223 6 6 4.1996 -0.8468 -1.2090 7 1 3.9198 -1.4503 -2.0598 8 6 4.7910 -1.4396 -0.1018 9 7 4.6753 -2.7365 0.0907 10 14 5.7511 -0.3968 1.1147 11 1 4.8691 -0.0211 2.2488 12 1 6.9102 -1.1724 1.6249 13 1 6.2373 0.8322 0.4376 14 6 4.1616 1.2663 -2.4583 15 6 2.8510 1.2952 -3.2472 16 7 3.0415 2.0586 -4.4829 17 6 2.0151 2.2177 -5.3419 18 8 0.9311 1.7271 -5.0914 19 6 2.2068 2.9870 -6.5860 20 6 2.9879 4.1417 -6.5970 21 7 3.1632 4.8333 -7.7066 22 6 2.6208 4.4822 -8.8553 23 6 1.8230 3.3422 -8.9453 24 7 1.1446 2.7343 -9.9512 25 6 0.5461 1.6736 -9.4927 26 7 0.8010 1.5317 -8.1617 27 6 0.3089 0.4589 -7.2940 28 6 1.6070 2.5728 -7.7859 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8548 0.6104 0.8690 35 1 3.9787 2.1796 0.0381 36 1 5.0889 -3.1509 0.8641 37 1 4.9378 0.7944 -3.0605 38 1 4.4608 2.2855 -2.2136 39 1 2.0746 1.7670 -2.6450 40 1 2.5517 0.2759 -3.4919 41 1 3.9063 2.4497 -4.6830 42 1 3.4567 4.4753 -5.6830 43 1 2.7953 5.0836 -9.7352 44 1 -0.0634 1.0037 -10.0810 45 1 -0.6067 0.7829 -6.7993 46 1 0.1037 -0.4280 -7.8934 47 1 1.0636 0.2235 -6.5435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725759132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:01 Heat of formation + Delta-G solvation = 46.627132 kcal Electronic energy + Delta-G solvation = -30782.322708 eV Core-core repulsion = 26581.957488 eV Total energy + Delta-G solvation = -4200.365219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.75518 -39.76470 -38.59175 -37.57791 -36.01749 -34.55562 -34.34466 -32.14284 -31.60298 -30.39692 -29.64500 -27.97405 -27.35570 -25.73951 -25.01709 -23.76014 -23.25123 -22.47961 -21.62169 -20.84056 -20.07164 -18.12669 -17.87795 -17.39979 -16.90619 -16.37634 -16.15747 -15.77572 -15.67864 -15.41459 -15.19519 -14.77046 -14.74096 -14.45635 -14.19535 -13.95567 -13.77806 -13.68851 -13.44686 -12.94565 -12.71309 -12.67475 -12.60818 -12.28487 -11.93984 -11.76814 -11.24561 -11.13755 -10.86418 -10.78511 -10.74263 -10.67490 -10.49549 -10.31580 -9.80855 -9.65997 -9.59961 -9.25143 -9.06341 -8.80266 -8.60481 -8.53094 -6.93303 -5.94434 -3.41009 0.17177 1.08430 2.19333 2.25018 2.74469 3.12624 3.30532 3.44675 3.47545 3.56817 3.77484 4.04926 4.16247 4.44895 4.48021 4.53652 4.60249 4.67680 4.79531 4.94904 5.05829 5.12953 5.32254 5.39405 5.48112 5.53103 5.57056 5.68300 5.74474 5.79289 5.84964 5.92391 5.96102 6.03331 6.10227 6.12025 6.13727 6.23416 6.40341 6.45138 6.64483 6.64945 6.71742 7.30406 7.47303 7.64644 7.87860 8.06533 8.12556 8.39084 8.93324 9.71345 10.05063 11.21075 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002642 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.154207 B =10595.072933 C =11082.933372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.042 3.958 4 C 0.131 3.869 5 N -0.590 5.590 6 C -0.258 4.258 7 H 0.077 0.923 8 C 0.042 3.958 9 N -0.899 5.899 10 Si 0.880 3.120 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.140 3.860 15 C 0.094 3.906 16 N -0.713 5.713 17 C 0.558 3.442 18 O -0.539 6.539 19 C -0.168 4.168 20 C 0.132 3.868 21 N -0.488 5.488 22 C 0.193 3.807 23 C -0.015 4.015 24 N -0.480 5.480 25 C 0.262 3.738 26 N -0.475 5.475 27 C 0.080 3.920 28 C 0.119 3.881 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.168 0.832 43 H 0.169 0.831 44 H 0.221 0.779 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 11.810 -14.584 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.038 4.038 4 C 0.005 3.995 5 N -0.311 5.311 6 C -0.387 4.387 7 H 0.094 0.906 8 C -0.159 4.159 9 N -0.540 5.540 10 Si 0.711 3.289 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.012 3.988 15 C -0.031 4.031 16 N -0.363 5.363 17 C 0.343 3.657 18 O -0.417 6.417 19 C -0.177 4.177 20 C -0.020 4.020 21 N -0.198 5.198 22 C 0.027 3.973 23 C -0.137 4.137 24 N -0.199 5.199 25 C -0.024 4.024 26 N -0.163 5.163 27 C -0.061 4.061 28 C -0.002 4.002 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.233 0.767 42 H 0.185 0.815 43 H 0.186 0.814 44 H 0.237 0.763 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.258 11.997 -14.878 20.444 hybrid contribution -0.144 -0.313 1.547 1.585 sum -7.402 11.684 -13.330 19.209 Atomic orbital electron populations 1.22657 0.83605 1.01926 0.98448 1.88267 1.17054 1.26476 1.94839 1.23369 0.97371 0.85176 0.97840 1.21409 0.90333 0.96172 0.91587 1.43863 1.76837 1.05957 1.04449 1.18595 1.34671 0.80618 1.04785 0.90587 1.25365 0.97645 0.94984 0.97874 1.69842 1.44919 1.10174 1.29083 0.86894 0.79940 0.80724 0.81360 1.21495 1.23079 1.19494 1.20999 0.93431 0.95391 0.88965 1.22536 1.01554 0.95917 0.83049 1.46085 1.13178 1.54674 1.22345 1.17950 0.84714 0.80224 0.82820 1.90783 1.25199 1.49653 1.76085 1.19972 1.04761 1.00653 0.92302 1.22766 0.92817 0.89472 0.96921 1.67693 1.22300 1.31341 0.98422 1.22281 0.88658 0.90549 0.95858 1.20151 1.04350 0.99539 0.89617 1.70479 1.12600 1.07513 1.29293 1.25619 0.98933 0.96577 0.81249 1.45276 1.39128 1.21746 1.10108 1.22308 1.02492 0.87213 0.94084 1.18681 0.95189 0.90795 0.95487 0.95090 0.90294 0.95486 0.95250 0.94289 0.91463 0.92778 0.92825 0.91766 0.93893 0.91814 0.90961 0.76658 0.81467 0.81367 0.76284 0.89522 0.89604 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.54 10.32 -35.23 -0.36 -7.90 16 3 C 0.04 0.78 6.18 37.16 0.23 1.01 16 4 C 0.13 2.68 4.72 -4.05 -0.02 2.67 16 5 N -0.59 -12.97 2.02 -173.24 -0.35 -13.32 16 6 C -0.26 -6.92 9.64 -15.06 -0.15 -7.06 16 7 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 8 C 0.04 1.18 5.32 -17.43 -0.09 1.08 16 9 N -0.90 -27.19 13.97 55.49 0.78 -26.41 16 10 Si 0.88 21.63 24.83 -169.99 -4.22 17.41 16 11 H -0.29 -6.95 6.73 56.52 0.38 -6.57 16 12 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.27 -6.31 7.10 56.52 0.40 -5.90 16 14 C 0.14 2.40 5.82 -4.04 -0.02 2.38 16 15 C 0.09 1.53 5.88 -4.04 -0.02 1.50 16 16 N -0.71 -9.11 5.48 -61.35 -0.34 -9.45 16 17 C 0.56 7.74 6.77 -12.47 -0.08 7.66 16 18 O -0.54 -8.94 13.48 5.29 0.07 -8.86 16 19 C -0.17 -2.08 5.78 -104.86 -0.61 -2.69 16 20 C 0.13 1.41 10.51 -17.08 -0.18 1.23 16 21 N -0.49 -5.44 10.30 -12.64 -0.13 -5.57 16 22 C 0.19 2.05 11.25 -17.12 -0.19 1.86 16 23 C -0.02 -0.19 7.27 -84.73 -0.62 -0.80 16 24 N -0.48 -5.51 11.28 -12.01 -0.14 -5.65 16 25 C 0.26 2.36 12.50 -89.56 -1.12 1.24 16 26 N -0.48 -5.15 3.18 -122.87 -0.39 -5.54 16 27 C 0.08 0.77 9.45 59.85 0.57 1.34 16 28 C 0.12 1.51 6.77 -83.81 -0.57 0.94 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.68 5.89 -51.93 -0.31 0.37 16 34 H 0.07 1.56 3.40 -51.93 -0.18 1.39 16 35 H 0.05 0.95 7.97 -51.93 -0.41 0.53 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 38 H 0.04 0.63 7.95 -51.93 -0.41 0.22 16 39 H 0.06 1.10 5.89 -51.93 -0.31 0.79 16 40 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 41 H 0.40 3.98 7.87 -40.82 -0.32 3.66 16 42 H 0.17 1.34 7.81 -52.48 -0.41 0.93 16 43 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.22 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 46 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 47 H 0.09 1.16 6.01 -51.93 -0.31 0.85 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -35.44 384.73 -7.49 -42.93 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.45 Total: 2.59 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -1.76 Total: 13.98 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.57 Total: -65.94 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.29 Total: -16.76 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.22 Total: 17.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.44 -7.49 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725759132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.556 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds