Wall clock time and date at job start Wed Apr 1 2020 05:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99847 * 2 1 4 4 C 1.52999 * 109.46650 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47406 * 62.16422 * 4 3 2 6 6 C 1.36943 * 120.00317 * 264.53844 * 5 4 3 7 7 H 1.08000 * 120.00236 * 141.85369 * 6 5 4 8 8 C 1.38814 * 119.99351 * 321.85650 * 6 5 4 9 9 N 1.31622 * 119.99784 * 160.77634 * 8 6 5 10 10 Si 1.86795 * 120.00212 * 340.77118 * 8 6 5 11 11 H 1.48508 * 109.46820 * 95.71947 * 10 8 6 12 12 H 1.48506 * 109.47305 * 215.71496 * 10 8 6 13 13 H 1.48497 * 109.47270 * 335.72014 * 10 8 6 14 14 C 1.46503 * 120.00448 * 84.53783 * 5 4 3 15 15 C 1.53001 * 109.47175 * 270.00471 * 14 5 4 16 16 N 1.46493 * 109.47520 * 179.97438 * 15 14 5 17 17 C 1.34780 * 120.00473 * 179.97438 * 16 15 14 18 18 O 1.21588 * 119.99558 * 359.97438 * 17 16 15 19 19 C 1.47527 * 120.00277 * 179.97438 * 17 16 15 20 20 C 1.39415 * 120.75561 * 321.15006 * 19 17 16 21 21 N 1.31914 * 121.01827 * 179.97438 * 20 19 17 22 22 C 1.31798 * 122.60071 * 359.97438 * 21 20 19 23 23 C 1.39442 * 120.63186 * 0.02562 * 22 21 20 24 24 N 1.35697 * 134.43763 * 180.02562 * 23 22 21 25 25 C 1.30130 * 109.50558 * 179.97438 * 24 23 22 26 26 N 1.36256 * 110.05790 * 0.02562 * 25 24 23 27 27 C 1.46497 * 126.29893 * 180.25786 * 26 25 24 28 28 C 1.36920 * 107.40323 * 359.97438 * 26 25 24 29 29 H 1.09004 * 109.47229 * 59.99735 * 1 2 3 30 30 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47180 * 299.99719 * 1 2 3 32 32 H 1.08995 * 109.46871 * 60.00342 * 3 2 1 33 33 H 1.09003 * 109.47197 * 299.99885 * 3 2 1 34 34 H 1.08995 * 109.47302 * 302.16223 * 4 3 2 35 35 H 1.09001 * 109.46736 * 182.16081 * 4 3 2 36 36 H 0.97001 * 120.00326 * 179.97438 * 9 8 6 37 37 H 1.08990 * 109.47553 * 150.00100 * 14 5 4 38 38 H 1.09004 * 109.46610 * 29.99625 * 14 5 4 39 39 H 1.09001 * 109.47250 * 59.98922 * 15 14 5 40 40 H 1.09008 * 109.46862 * 299.99849 * 15 14 5 41 41 H 0.97006 * 119.99920 * 359.97438 * 16 15 14 42 42 H 1.08003 * 119.49220 * 359.97240 * 20 19 17 43 43 H 1.07996 * 119.68744 * 179.97438 * 22 21 20 44 44 H 1.08003 * 124.97315 * 180.02562 * 25 24 23 45 45 H 1.08994 * 109.47416 * 265.63327 * 27 26 25 46 46 H 1.08997 * 109.47197 * 25.63429 * 27 26 25 47 47 H 1.09004 * 109.47092 * 145.62904 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9708 0.5033 -1.2223 6 6 4.1996 -0.8468 -1.2090 7 1 3.9198 -1.4503 -2.0598 8 6 4.7910 -1.4396 -0.1018 9 7 4.6753 -2.7365 0.0907 10 14 5.7511 -0.3968 1.1147 11 1 4.8691 -0.0211 2.2488 12 1 6.9102 -1.1724 1.6249 13 1 6.2373 0.8322 0.4376 14 6 4.1616 1.2663 -2.4583 15 6 2.8510 1.2952 -3.2472 16 7 3.0415 2.0586 -4.4829 17 6 2.0151 2.2177 -5.3419 18 8 0.9311 1.7271 -5.0914 19 6 2.2068 2.9870 -6.5860 20 6 2.9879 4.1417 -6.5970 21 7 3.1632 4.8333 -7.7066 22 6 2.6208 4.4822 -8.8553 23 6 1.8230 3.3422 -8.9453 24 7 1.1446 2.7343 -9.9512 25 6 0.5461 1.6736 -9.4927 26 7 0.8010 1.5317 -8.1617 27 6 0.3089 0.4589 -7.2940 28 6 1.6070 2.5728 -7.7859 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8548 0.6104 0.8690 35 1 3.9787 2.1796 0.0381 36 1 5.0889 -3.1509 0.8641 37 1 4.9378 0.7944 -3.0605 38 1 4.4608 2.2855 -2.2136 39 1 2.0746 1.7670 -2.6450 40 1 2.5517 0.2759 -3.4919 41 1 3.9063 2.4497 -4.6830 42 1 3.4567 4.4753 -5.6830 43 1 2.7953 5.0836 -9.7352 44 1 -0.0634 1.0037 -10.0810 45 1 -0.6067 0.7829 -6.7993 46 1 0.1037 -0.4280 -7.8934 47 1 1.0636 0.2235 -6.5435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725759132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:00 Heat of formation + Delta-G solvation = 20.177256 kcal Electronic energy + Delta-G solvation = -30783.469660 eV Core-core repulsion = 26581.957488 eV Total energy + Delta-G solvation = -4201.512172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.56305 -40.84853 -39.48350 -39.10571 -37.54808 -35.82186 -35.27138 -33.74417 -32.93894 -31.37872 -30.90415 -29.47477 -28.22018 -27.18731 -26.16618 -25.21487 -24.08768 -23.78620 -22.70835 -22.38173 -21.17865 -19.08184 -18.77938 -18.71055 -18.28717 -17.73189 -17.28157 -17.09714 -16.86455 -16.62570 -16.33943 -16.18735 -15.87163 -15.65895 -15.41503 -15.16080 -14.99793 -14.78314 -14.68450 -14.39438 -14.22814 -13.70075 -13.60051 -13.50395 -13.32823 -13.13730 -12.93638 -12.61407 -12.39541 -12.30266 -11.88346 -11.77525 -11.69382 -11.68514 -11.40407 -11.37418 -10.67052 -10.57228 -10.42618 -10.14257 -10.04113 -9.45535 -8.77826 -8.08459 -5.51359 -0.66099 0.21872 1.33672 1.36594 1.46004 1.49202 1.56629 1.76670 2.02437 2.50080 2.70942 3.01190 3.08489 3.12290 3.26246 3.40528 3.50982 3.67745 3.78277 3.90441 4.05263 4.15094 4.18035 4.30098 4.31196 4.36737 4.37306 4.49544 4.54668 4.56812 4.61623 4.66425 4.68110 4.74800 4.83328 4.95797 4.96997 5.11004 5.14259 5.17086 5.32737 5.39815 5.92234 6.00546 6.24894 6.42212 6.51873 6.52472 6.81984 7.02428 7.08303 7.68776 8.06408 9.11504 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002642 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.154207 B =10595.072933 C =11082.933372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.042 3.958 4 C 0.121 3.879 5 N -0.602 5.602 6 C -0.236 4.236 7 H 0.030 0.970 8 C -0.021 4.021 9 N -0.956 5.956 10 Si 0.949 3.051 11 H -0.282 1.282 12 H -0.316 1.316 13 H -0.243 1.243 14 C 0.140 3.860 15 C 0.117 3.883 16 N -0.700 5.700 17 C 0.561 3.439 18 O -0.570 6.570 19 C -0.185 4.185 20 C 0.141 3.859 21 N -0.497 5.497 22 C 0.195 3.805 23 C -0.031 4.031 24 N -0.503 5.503 25 C 0.274 3.726 26 N -0.483 5.483 27 C 0.086 3.914 28 C 0.094 3.906 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.258 0.742 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.416 0.584 42 H 0.195 0.805 43 H 0.194 0.806 44 H 0.267 0.733 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 14.890 -15.329 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.036 4.036 4 C -0.004 4.004 5 N -0.324 5.324 6 C -0.366 4.366 7 H 0.048 0.952 8 C -0.217 4.217 9 N -0.601 5.601 10 Si 0.778 3.222 11 H -0.210 1.210 12 H -0.245 1.245 13 H -0.166 1.166 14 C 0.014 3.986 15 C -0.009 4.009 16 N -0.351 5.351 17 C 0.348 3.652 18 O -0.451 6.451 19 C -0.193 4.193 20 C -0.011 4.011 21 N -0.206 5.206 22 C 0.030 3.970 23 C -0.151 4.151 24 N -0.222 5.222 25 C -0.011 4.011 26 N -0.170 5.170 27 C -0.055 4.055 28 C -0.027 4.027 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.253 0.747 42 H 0.211 0.789 43 H 0.211 0.789 44 H 0.282 0.718 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.209 15.158 -15.662 22.958 hybrid contribution -0.293 -1.265 1.615 2.072 sum -7.502 13.893 -14.048 21.134 Atomic orbital electron populations 1.22771 0.81463 1.02464 0.99979 1.88192 1.19667 1.28625 1.95229 1.23383 0.96086 0.84448 0.99721 1.21593 0.91883 0.97346 0.89533 1.43924 1.77311 1.04556 1.06586 1.18375 1.32560 0.82817 1.02815 0.95231 1.26035 0.99217 0.95967 1.00443 1.70007 1.47205 1.12477 1.30382 0.85783 0.77681 0.79606 0.79147 1.20972 1.24542 1.16578 1.21138 0.93547 0.96826 0.87098 1.21998 1.00766 0.94059 0.84053 1.45816 1.13958 1.54161 1.21194 1.18184 0.84191 0.79710 0.83139 1.90767 1.26563 1.50965 1.76769 1.19880 1.06504 1.01531 0.91429 1.23173 0.91686 0.88437 0.97768 1.67798 1.22689 1.31460 0.98684 1.22732 0.87550 0.90200 0.96543 1.20430 1.04976 1.00086 0.89650 1.70487 1.13635 1.08667 1.29460 1.26576 0.97743 0.96136 0.80642 1.45486 1.39042 1.21583 1.10875 1.22250 1.00791 0.88326 0.94121 1.19045 0.95960 0.91729 0.95966 0.94334 0.90449 0.92955 0.92447 0.93057 0.94179 0.88635 0.93300 0.92080 0.89583 0.92403 0.95087 0.74685 0.78877 0.78933 0.71776 0.90455 0.85820 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -17.13 10.32 -148.98 -1.54 -18.66 16 3 C 0.04 1.48 6.18 71.98 0.44 1.93 16 4 C 0.12 4.66 4.72 86.38 0.41 5.07 16 5 N -0.60 -25.83 2.02 -702.02 -1.42 -27.25 16 6 C -0.24 -12.97 9.64 84.03 0.81 -12.16 16 7 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 8 C -0.02 -1.23 5.32 84.86 0.45 -0.78 16 9 N -0.96 -60.42 13.97 21.65 0.30 -60.12 16 10 Si 0.95 44.98 24.83 68.60 1.70 46.69 16 11 H -0.28 -13.01 6.73 99.48 0.67 -12.34 16 12 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 13 H -0.24 -10.26 7.10 99.48 0.71 -9.55 16 14 C 0.14 4.55 5.82 86.38 0.50 5.05 16 15 C 0.12 3.74 5.88 86.38 0.51 4.24 16 16 N -0.70 -17.12 5.48 -466.28 -2.56 -19.68 16 17 C 0.56 15.39 6.77 86.69 0.59 15.98 16 18 O -0.57 -19.27 13.48 -3.99 -0.05 -19.32 16 19 C -0.18 -4.42 5.78 -20.02 -0.12 -4.53 16 20 C 0.14 2.74 10.51 84.96 0.89 3.63 16 21 N -0.50 -10.10 10.30 -193.91 -2.00 -12.10 16 22 C 0.20 3.83 11.25 84.99 0.96 4.79 16 23 C -0.03 -0.71 7.27 39.47 0.29 -0.42 16 24 N -0.50 -10.77 11.28 -191.90 -2.16 -12.94 16 25 C 0.27 4.39 12.50 179.98 2.25 6.64 16 26 N -0.48 -10.02 3.18 -542.66 -1.73 -11.74 16 27 C 0.09 1.63 9.45 127.77 1.21 2.84 16 28 C 0.09 2.32 6.77 39.50 0.27 2.58 16 29 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.66 5.89 -2.39 -0.01 1.65 16 34 H 0.04 1.78 3.40 -2.39 -0.01 1.77 16 35 H 0.10 2.87 7.97 -2.39 -0.02 2.85 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 38 H 0.09 2.13 7.95 -2.38 -0.02 2.11 16 39 H 0.06 1.93 5.89 -2.39 -0.01 1.92 16 40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.42 7.38 7.87 -92.70 -0.73 6.65 16 42 H 0.19 2.52 7.81 -2.91 -0.02 2.49 16 43 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.27 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.08 1.60 7.90 -2.39 -0.02 1.58 16 46 H 0.12 1.31 8.13 -2.39 -0.02 1.29 16 47 H 0.06 1.65 6.01 -2.38 -0.01 1.63 16 Total: -1.00 -81.93 384.73 1.51 -80.43 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.25 Total: 17.60 kcal Atomic # 6 Polarization: 26.39 SS G_CDS: 10.71 Total: 37.10 kcal Atomic # 7 Polarization: -134.27 SS G_CDS: -9.56 Total: -143.83 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.59 Total: -37.99 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.70 Total: 46.69 kcal Total: -81.93 1.51 -80.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725759132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.603 kcal (2) G-P(sol) polarization free energy of solvation -81.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds