Wall clock time and date at job start Wed Apr 1 2020 04:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46903 * 109.46853 * 2 1 4 4 C 1.46894 * 110.99709 * 76.02642 * 3 2 1 5 5 C 1.53007 * 109.47095 * 199.54459 * 4 3 2 6 6 N 1.46498 * 109.47164 * 174.88726 * 5 4 3 7 7 C 1.34780 * 119.99735 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99775 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99908 * 180.02562 * 7 6 5 10 10 C 1.53004 * 109.47121 * 180.02562 * 9 7 6 11 11 C 1.53778 * 113.61565 * 185.00232 * 10 9 7 12 12 C 1.53783 * 87.17235 * 220.05805 * 11 10 9 13 13 F 1.39893 * 113.62052 * 139.93439 * 12 11 10 14 14 F 1.39901 * 113.61405 * 270.83955 * 12 11 10 15 15 C 1.53783 * 87.08154 * 25.38708 * 12 11 10 16 16 C 1.46894 * 110.99724 * 199.97642 * 3 2 1 17 17 C 1.50707 * 109.47110 * 66.04983 * 16 3 2 18 18 O 1.21298 * 119.99655 * 359.97438 * 17 16 3 19 19 N 1.34777 * 120.00093 * 179.97438 * 17 16 3 20 20 C 1.37095 * 119.99627 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00583 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99745 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00114 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99977 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47128 * 89.99883 * 24 22 20 26 26 H 1.48502 * 109.47248 * 210.00365 * 24 22 20 27 27 H 1.48505 * 109.47115 * 330.00246 * 24 22 20 28 28 H 1.08997 * 109.47088 * 294.87222 * 1 2 3 29 29 H 1.08996 * 109.46804 * 54.87706 * 1 2 3 30 30 H 1.09007 * 109.46544 * 174.86995 * 1 2 3 31 31 H 1.09001 * 109.47143 * 239.99793 * 2 1 3 32 32 H 1.09004 * 109.46814 * 119.99829 * 2 1 3 33 33 H 1.08997 * 109.47412 * 79.54818 * 4 3 2 34 34 H 1.09006 * 109.47622 * 319.54067 * 4 3 2 35 35 H 1.09002 * 109.46663 * 54.88315 * 5 4 3 36 36 H 1.08998 * 109.46781 * 294.88768 * 5 4 3 37 37 H 0.96997 * 120.00086 * 0.02562 * 6 5 4 38 38 H 1.08995 * 109.47611 * 59.99592 * 9 7 6 39 39 H 1.08998 * 109.46954 * 299.99494 * 9 7 6 40 40 H 1.09006 * 112.90428 * 316.24406 * 10 9 7 41 41 H 1.08992 * 113.62080 * 105.46245 * 11 10 9 42 42 H 1.09002 * 113.60889 * 334.64191 * 11 10 9 43 43 H 1.08997 * 113.61388 * 89.11635 * 15 12 11 44 44 H 1.09004 * 113.61461 * 219.94046 * 15 12 11 45 45 H 1.08996 * 109.47420 * 186.04296 * 16 3 2 46 46 H 1.09003 * 109.47354 * 306.05098 * 16 3 2 47 47 H 0.96998 * 119.99588 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00367 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8829 1.9917 1.3308 5 6 1.9278 3.5158 1.2036 6 7 1.6696 4.1228 2.5117 7 6 1.6594 5.4642 2.6419 8 8 1.8644 6.1688 1.6761 9 6 1.3945 6.0887 3.9876 10 6 1.4380 7.6128 3.8601 11 6 1.3000 8.3476 5.2039 12 6 0.4074 9.3625 4.4704 13 9 -0.6988 9.7794 5.2184 14 9 1.1169 10.4286 3.9072 15 6 0.0867 8.2392 3.4703 16 6 3.4103 1.4517 -0.4685 17 6 3.4713 1.0499 -1.9198 18 8 2.4561 0.7382 -2.5059 19 7 4.6538 1.0370 -2.5663 20 6 4.7092 0.6710 -3.8864 21 1 3.8054 0.3934 -4.4082 22 6 5.9283 0.6581 -4.5531 23 7 5.9814 0.3078 -5.8185 24 14 7.4916 1.1389 -3.6507 25 1 8.0982 -0.0681 -3.0340 26 1 8.4521 1.7405 -4.6103 27 1 7.1671 2.1266 -2.5902 28 1 -0.3633 0.4322 0.9323 29 1 -0.3633 0.5912 -0.8405 30 1 -0.3633 -1.0236 -0.0919 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 2.7004 1.6562 1.9689 34 1 0.9318 1.6917 1.7709 35 1 1.1677 3.8437 0.4945 36 1 2.9119 3.8219 0.8488 37 1 1.5061 3.5593 3.2841 38 1 2.1550 5.7611 4.6963 39 1 0.4107 5.7822 4.3429 40 1 2.2732 7.9641 3.2541 41 1 2.2358 8.7718 5.5677 42 1 0.7725 7.7716 5.9642 43 1 -0.7727 7.6326 3.7558 44 1 0.0417 8.5763 2.4347 45 1 3.7827 2.4701 -0.3576 46 1 4.0258 0.7734 0.1224 47 1 5.4656 1.2859 -2.0974 48 1 6.8324 0.2985 -6.2839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731805577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:10 Heat of formation + Delta-G solvation = -144.009702 kcal Electronic energy + Delta-G solvation = -30010.636570 eV Core-core repulsion = 25351.315531 eV Total energy + Delta-G solvation = -4659.321039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.17029 -47.51111 -40.24734 -39.00598 -38.20154 -37.01004 -34.87050 -33.88076 -31.73366 -31.41443 -30.62703 -29.01345 -26.73578 -26.39249 -24.27441 -23.75000 -22.53155 -21.19813 -20.62212 -20.23814 -19.35784 -18.32360 -17.87780 -17.43968 -16.99836 -16.67057 -16.42526 -16.01915 -15.89347 -15.55058 -14.99522 -14.84885 -14.57599 -14.39117 -14.27586 -14.10727 -13.85676 -13.77971 -13.58839 -13.36477 -13.19539 -13.03195 -12.90496 -12.54555 -12.44388 -12.03309 -11.86221 -11.73649 -11.65953 -11.64149 -11.51768 -11.36588 -11.24694 -10.91087 -10.85005 -10.63561 -10.57618 -10.09992 -9.97393 -9.52862 -9.27469 -8.57443 -8.18377 -8.06921 -6.30888 -3.82179 2.38818 2.77743 3.03147 3.06324 3.06448 3.15271 3.35710 3.72723 3.79024 3.85413 3.86978 4.00767 4.10507 4.44051 4.62106 4.67497 4.82237 4.84421 4.89996 4.93491 4.98099 5.06486 5.18313 5.19728 5.25762 5.29558 5.31487 5.35698 5.44507 5.67626 5.69887 5.74006 5.77852 5.79206 5.85623 5.95842 6.02894 6.18557 6.36310 6.49881 7.11609 7.17535 7.26221 7.58305 7.97210 8.14497 8.60122 8.95386 9.42576 9.83065 10.82188 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.001857 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.061161 B =15074.189002 C =16520.830626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.120 3.880 6 N -0.731 5.731 7 C 0.510 3.490 8 O -0.532 6.532 9 C -0.128 4.128 10 C -0.089 4.089 11 C -0.162 4.162 12 C 0.252 3.748 13 F -0.193 7.193 14 F -0.179 7.179 15 C -0.160 4.160 16 C 0.040 3.960 17 C 0.452 3.548 18 O -0.557 6.557 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.023 0.977 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.398 0.602 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 10.330 28.103 31.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 N -0.237 5.237 4 C -0.084 4.084 5 C -0.004 4.004 6 N -0.383 5.383 7 C 0.295 3.705 8 O -0.408 6.408 9 C -0.168 4.168 10 C -0.107 4.107 11 C -0.200 4.200 12 C 0.216 3.784 13 F -0.174 7.174 14 F -0.160 7.160 15 C -0.198 4.198 16 C -0.092 4.092 17 C 0.237 3.763 18 O -0.439 6.439 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.114 0.886 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.275 10.891 26.443 30.064 hybrid contribution 1.819 -0.144 1.511 2.369 sum -7.456 10.746 27.954 30.862 Atomic orbital electron populations 1.21693 0.95104 1.01243 1.01613 1.22189 0.96181 0.87706 1.01449 1.61438 1.19699 1.19752 1.22777 1.22258 1.01532 0.93663 0.90978 1.21367 1.02669 0.92188 0.84176 1.45962 1.73348 1.06783 1.12209 1.20563 0.76837 0.82111 0.90952 1.90763 1.48091 1.61400 1.40551 1.21605 1.04602 0.94931 0.95708 1.22198 0.98939 0.93585 0.96022 1.24185 1.01069 0.96128 0.98631 1.22080 0.81904 0.82784 0.91676 1.93008 1.54552 1.92292 1.77532 1.93032 1.78143 1.59310 1.85480 1.24215 0.99495 0.95045 1.00997 1.21980 0.89357 1.01970 0.95886 1.19601 0.84248 0.84567 0.87847 1.90554 1.33654 1.51649 1.67999 1.42219 1.07182 1.61737 1.11925 1.19417 0.97281 1.42188 0.84341 0.86246 1.25039 0.97873 0.97633 0.95645 1.69614 1.26566 1.47079 1.08847 0.86684 0.83805 0.79086 0.79896 1.19703 1.20159 1.19463 0.93915 0.91304 0.92725 0.88400 0.95831 0.94344 0.90109 0.90087 0.91328 0.76806 0.88042 0.88316 0.86637 0.88634 0.86879 0.87133 0.88324 0.89192 0.93274 0.79767 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.96 37.16 0.37 -1.40 16 2 C 0.05 0.76 5.18 -3.82 -0.02 0.74 16 3 N -0.51 -7.54 4.10 -236.06 -0.97 -8.51 16 4 C 0.04 0.46 4.92 -3.82 -0.02 0.44 16 5 C 0.12 1.31 5.70 -4.04 -0.02 1.28 16 6 N -0.73 -5.64 5.56 -60.29 -0.33 -5.97 16 7 C 0.51 4.60 7.83 -10.99 -0.09 4.52 16 8 O -0.53 -7.41 15.76 5.55 0.09 -7.33 16 9 C -0.13 -0.60 5.54 -27.88 -0.15 -0.75 16 10 C -0.09 -0.54 3.14 -89.72 -0.28 -0.82 16 11 C -0.16 -0.77 7.42 -25.92 -0.19 -0.96 16 12 C 0.25 1.92 3.28 -25.92 -0.08 1.84 16 13 F -0.19 -1.72 17.41 2.25 0.04 -1.68 16 14 F -0.18 -1.77 17.38 2.25 0.04 -1.73 16 15 C -0.16 -1.08 7.43 -25.83 -0.19 -1.27 16 16 C 0.04 0.64 5.27 -4.98 -0.03 0.61 16 17 C 0.45 10.04 7.30 -10.98 -0.08 9.96 16 18 O -0.56 -14.48 14.12 5.54 0.08 -14.40 16 19 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 20 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 21 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 24 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 H 0.04 0.45 6.91 -51.93 -0.36 0.09 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.79 5.85 -51.93 -0.30 1.49 16 32 H 0.02 0.29 8.00 -51.93 -0.42 -0.12 16 33 H 0.04 0.34 8.00 -51.93 -0.42 -0.07 16 34 H 0.08 0.71 6.58 -51.93 -0.34 0.37 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.86 6.95 -51.93 -0.36 0.50 16 37 H 0.40 1.71 8.47 -40.82 -0.35 1.36 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.25 7.84 -51.93 -0.41 -0.16 16 40 H 0.12 0.94 7.67 -51.93 -0.40 0.54 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.31 8.10 -51.93 -0.42 -0.11 16 43 H 0.11 0.56 7.90 -51.93 -0.41 0.15 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.32 6.71 -51.93 -0.35 0.97 16 46 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 47 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -35.40 397.89 -7.37 -42.77 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.28 Total: 8.63 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.04 Total: 6.53 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.58 Total: -53.44 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.17 Total: -21.72 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.40 -7.37 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731805577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.239 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds