Wall clock time and date at job start Wed Apr 1 2020 04:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46903 * 109.46853 * 2 1 4 4 C 1.46894 * 110.99709 * 76.02642 * 3 2 1 5 5 C 1.53007 * 109.47095 * 199.54459 * 4 3 2 6 6 N 1.46498 * 109.47164 * 174.88726 * 5 4 3 7 7 C 1.34780 * 119.99735 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99775 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99908 * 180.02562 * 7 6 5 10 10 C 1.53004 * 109.47121 * 180.02562 * 9 7 6 11 11 C 1.53778 * 113.61565 * 185.00232 * 10 9 7 12 12 C 1.53783 * 87.17235 * 220.05805 * 11 10 9 13 13 F 1.39893 * 113.62052 * 139.93439 * 12 11 10 14 14 F 1.39901 * 113.61405 * 270.83955 * 12 11 10 15 15 C 1.53783 * 87.08154 * 25.38708 * 12 11 10 16 16 C 1.46894 * 110.99724 * 199.97642 * 3 2 1 17 17 C 1.50707 * 109.47110 * 66.04983 * 16 3 2 18 18 O 1.21298 * 119.99655 * 359.97438 * 17 16 3 19 19 N 1.34777 * 120.00093 * 179.97438 * 17 16 3 20 20 C 1.37095 * 119.99627 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00583 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99745 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00114 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99977 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47128 * 89.99883 * 24 22 20 26 26 H 1.48502 * 109.47248 * 210.00365 * 24 22 20 27 27 H 1.48505 * 109.47115 * 330.00246 * 24 22 20 28 28 H 1.08997 * 109.47088 * 294.87222 * 1 2 3 29 29 H 1.08996 * 109.46804 * 54.87706 * 1 2 3 30 30 H 1.09007 * 109.46544 * 174.86995 * 1 2 3 31 31 H 1.09001 * 109.47143 * 239.99793 * 2 1 3 32 32 H 1.09004 * 109.46814 * 119.99829 * 2 1 3 33 33 H 1.08997 * 109.47412 * 79.54818 * 4 3 2 34 34 H 1.09006 * 109.47622 * 319.54067 * 4 3 2 35 35 H 1.09002 * 109.46663 * 54.88315 * 5 4 3 36 36 H 1.08998 * 109.46781 * 294.88768 * 5 4 3 37 37 H 0.96997 * 120.00086 * 0.02562 * 6 5 4 38 38 H 1.08995 * 109.47611 * 59.99592 * 9 7 6 39 39 H 1.08998 * 109.46954 * 299.99494 * 9 7 6 40 40 H 1.09006 * 112.90428 * 316.24406 * 10 9 7 41 41 H 1.08992 * 113.62080 * 105.46245 * 11 10 9 42 42 H 1.09002 * 113.60889 * 334.64191 * 11 10 9 43 43 H 1.08997 * 113.61388 * 89.11635 * 15 12 11 44 44 H 1.09004 * 113.61461 * 219.94046 * 15 12 11 45 45 H 1.08996 * 109.47420 * 186.04296 * 16 3 2 46 46 H 1.09003 * 109.47354 * 306.05098 * 16 3 2 47 47 H 0.96998 * 119.99588 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00367 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8829 1.9917 1.3308 5 6 1.9278 3.5158 1.2036 6 7 1.6696 4.1228 2.5117 7 6 1.6594 5.4642 2.6419 8 8 1.8644 6.1688 1.6761 9 6 1.3945 6.0887 3.9876 10 6 1.4380 7.6128 3.8601 11 6 1.3000 8.3476 5.2039 12 6 0.4074 9.3625 4.4704 13 9 -0.6988 9.7794 5.2184 14 9 1.1169 10.4286 3.9072 15 6 0.0867 8.2392 3.4703 16 6 3.4103 1.4517 -0.4685 17 6 3.4713 1.0499 -1.9198 18 8 2.4561 0.7382 -2.5059 19 7 4.6538 1.0370 -2.5663 20 6 4.7092 0.6710 -3.8864 21 1 3.8054 0.3934 -4.4082 22 6 5.9283 0.6581 -4.5531 23 7 5.9814 0.3078 -5.8185 24 14 7.4916 1.1389 -3.6507 25 1 8.0982 -0.0681 -3.0340 26 1 8.4521 1.7405 -4.6103 27 1 7.1671 2.1266 -2.5902 28 1 -0.3633 0.4322 0.9323 29 1 -0.3633 0.5912 -0.8405 30 1 -0.3633 -1.0236 -0.0919 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 2.7004 1.6562 1.9689 34 1 0.9318 1.6917 1.7709 35 1 1.1677 3.8437 0.4945 36 1 2.9119 3.8219 0.8488 37 1 1.5061 3.5593 3.2841 38 1 2.1550 5.7611 4.6963 39 1 0.4107 5.7822 4.3429 40 1 2.2732 7.9641 3.2541 41 1 2.2358 8.7718 5.5677 42 1 0.7725 7.7716 5.9642 43 1 -0.7727 7.6326 3.7558 44 1 0.0417 8.5763 2.4347 45 1 3.7827 2.4701 -0.3576 46 1 4.0258 0.7734 0.1224 47 1 5.4656 1.2859 -2.0974 48 1 6.8324 0.2985 -6.2839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731805577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:06 Heat of formation + Delta-G solvation = -171.997516 kcal Electronic energy + Delta-G solvation = -30011.850212 eV Core-core repulsion = 25351.315531 eV Total energy + Delta-G solvation = -4660.534682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.80331 -48.16264 -40.95831 -40.52316 -38.86357 -38.25565 -36.03180 -35.57301 -33.76205 -32.28909 -31.51340 -29.96275 -27.78322 -27.16157 -25.85042 -24.55891 -23.37978 -22.21191 -21.44208 -21.17163 -20.75304 -20.18330 -18.49631 -18.15115 -17.77508 -17.54214 -17.27313 -17.07181 -16.94609 -16.59542 -16.32697 -16.13769 -15.61376 -15.45716 -15.15437 -15.04555 -15.01915 -14.65409 -14.47835 -14.39481 -14.23938 -14.21338 -13.99610 -13.58437 -13.46738 -13.31850 -13.02356 -12.83096 -12.65815 -12.54196 -12.41739 -12.26669 -12.09335 -12.00096 -11.98605 -11.81160 -11.74635 -11.41394 -11.35160 -10.85290 -10.34443 -10.21873 -10.03778 -9.21514 -8.41050 -6.01313 1.29438 1.34286 1.43368 1.73983 1.97078 2.09210 2.22535 2.55872 2.73844 2.88899 3.15283 3.22615 3.31433 3.40416 3.46023 3.89207 3.96273 4.06430 4.11933 4.24471 4.25510 4.34826 4.44540 4.45673 4.54040 4.56208 4.58726 4.62246 4.70625 4.73041 4.77381 4.84433 4.87965 4.92863 4.95736 5.10664 5.23489 5.33123 5.42877 5.49232 5.54115 5.91114 6.05014 6.22808 6.60381 6.65520 6.89396 7.37814 7.40845 7.98417 8.76642 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.001857 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.061161 B =15074.189002 C =16520.830626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 N -0.539 5.539 4 C 0.054 3.946 5 C 0.126 3.874 6 N -0.714 5.714 7 C 0.503 3.497 8 O -0.591 6.591 9 C -0.116 4.116 10 C -0.090 4.090 11 C -0.138 4.138 12 C 0.231 3.769 13 F -0.202 7.202 14 F -0.199 7.199 15 C -0.162 4.162 16 C 0.053 3.947 17 C 0.450 3.550 18 O -0.602 6.602 19 N -0.594 5.594 20 C -0.325 4.325 21 H 0.055 0.945 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.234 1.234 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.420 0.580 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.145 0.855 43 H 0.132 0.868 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.388 0.612 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 10.157 33.670 35.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.074 4.074 3 N -0.265 5.265 4 C -0.074 4.074 5 C 0.001 3.999 6 N -0.367 5.367 7 C 0.291 3.709 8 O -0.471 6.471 9 C -0.155 4.155 10 C -0.109 4.109 11 C -0.176 4.176 12 C 0.195 3.805 13 F -0.183 7.183 14 F -0.180 7.180 15 C -0.200 4.200 16 C -0.078 4.078 17 C 0.238 3.762 18 O -0.486 6.486 19 N -0.237 5.237 20 C -0.454 4.454 21 H 0.073 0.927 22 C -0.216 4.216 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.157 1.157 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.258 0.742 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.163 0.837 43 H 0.150 0.850 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.223 0.777 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.152 10.695 32.083 34.788 hybrid contribution 1.271 -0.100 -0.290 1.307 sum -6.882 10.595 31.794 34.212 Atomic orbital electron populations 1.21644 0.94048 1.01554 1.01821 1.22093 0.97088 0.87618 1.00560 1.61324 1.18856 1.20228 1.26095 1.22267 1.03870 0.92336 0.88878 1.21083 1.00584 0.92999 0.85226 1.45765 1.72482 1.06771 1.11727 1.21439 0.75389 0.82061 0.91991 1.90754 1.50749 1.62720 1.42914 1.21658 1.07552 0.92960 0.93333 1.22097 0.97270 0.95029 0.96531 1.24157 1.00889 0.94411 0.98142 1.22624 0.82457 0.82612 0.92803 1.92984 1.55170 1.92443 1.77706 1.92985 1.78593 1.60477 1.85991 1.24313 1.01046 0.95211 0.99454 1.21867 0.91278 1.03556 0.91107 1.20922 0.82953 0.82011 0.90343 1.90540 1.35320 1.52825 1.69904 1.42062 1.08641 1.62571 1.10381 1.18980 0.95730 1.44086 0.86602 0.92664 1.26111 1.02187 0.96788 0.96475 1.69801 1.28130 1.48440 1.11233 0.85378 0.77130 0.79985 0.79113 1.17862 1.20175 1.15732 0.90755 0.94563 0.91797 0.93154 0.92631 0.91363 0.87869 0.93414 0.93087 0.74224 0.84617 0.84975 0.89449 0.87862 0.83719 0.84967 0.90880 0.87236 0.89851 0.77654 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.96 71.99 0.72 -2.49 16 2 C 0.05 1.48 5.18 86.31 0.45 1.93 16 3 N -0.54 -14.85 4.10 -900.76 -3.70 -18.55 16 4 C 0.05 0.90 4.92 86.31 0.42 1.32 16 5 C 0.13 2.49 5.70 86.38 0.49 2.98 16 6 N -0.71 -8.55 5.56 -463.05 -2.57 -11.12 16 7 C 0.50 7.91 7.83 87.66 0.69 8.60 16 8 O -0.59 -16.51 15.76 -3.05 -0.05 -16.55 16 9 C -0.12 -0.59 5.54 29.85 0.17 -0.42 16 10 C -0.09 -0.92 3.14 -10.21 -0.03 -0.96 16 11 C -0.14 -0.88 7.42 31.12 0.23 -0.64 16 12 C 0.23 3.31 3.28 31.12 0.10 3.41 16 13 F -0.20 -3.37 17.41 44.97 0.78 -2.59 16 14 F -0.20 -4.06 17.38 44.97 0.78 -3.28 16 15 C -0.16 -2.05 7.43 31.18 0.23 -1.82 16 16 C 0.05 1.59 5.27 85.56 0.45 2.04 16 17 C 0.45 20.32 7.30 87.66 0.64 20.96 16 18 O -0.60 -33.12 14.12 -3.08 -0.04 -33.17 16 19 N -0.59 -28.28 5.09 -306.97 -1.56 -29.85 16 20 C -0.32 -19.20 10.16 84.04 0.85 -18.35 16 21 H 0.06 3.89 7.39 -2.92 -0.02 3.87 16 22 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 23 N -0.94 -57.04 13.96 21.66 0.30 -56.73 16 24 Si 0.96 39.33 27.74 68.60 1.90 41.23 16 25 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 26 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.23 -8.13 6.52 99.48 0.65 -7.49 16 28 H 0.07 1.30 6.91 -2.39 -0.02 1.28 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.05 1.87 5.85 -2.39 -0.01 1.86 16 32 H 0.06 1.16 8.00 -2.38 -0.02 1.15 16 33 H 0.07 0.81 8.00 -2.39 -0.02 0.79 16 34 H 0.10 1.29 6.58 -2.38 -0.02 1.27 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.19 6.95 -2.39 -0.02 1.17 16 37 H 0.42 1.38 8.47 -92.71 -0.79 0.60 16 38 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.13 -0.12 7.84 -2.39 -0.02 -0.14 16 40 H 0.09 1.42 7.67 -2.38 -0.02 1.40 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.14 0.04 8.10 -2.39 -0.02 0.02 16 43 H 0.13 1.02 7.90 -2.39 -0.02 1.01 16 44 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.11 2.91 6.71 -2.39 -0.02 2.89 16 46 H 0.08 1.98 8.12 -2.39 -0.02 1.97 16 47 H 0.39 15.35 5.76 -92.71 -0.53 14.82 16 48 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -88.92 397.89 1.35 -87.57 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.38 Total: 26.99 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 5.88 Total: 16.05 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -7.53 Total: -116.25 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.09 Total: -49.72 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 1.56 Total: -5.87 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.23 kcal Total: -88.92 1.35 -87.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731805577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.430 kcal (2) G-P(sol) polarization free energy of solvation -88.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds