Wall clock time and date at job start Wed Apr 1 2020 04:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47358 * 2 1 4 4 C 1.46898 * 111.00285 * 165.60158 * 3 2 1 5 5 C 1.53003 * 109.46995 * 293.95603 * 4 3 2 6 6 N 1.46504 * 109.47159 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00245 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00260 * 179.97438 * 7 6 5 10 10 C 1.52997 * 112.84464 * 50.33393 * 9 7 6 11 11 C 1.53777 * 113.61601 * 279.14020 * 9 7 6 12 12 C 1.53961 * 87.01717 * 220.04579 * 11 9 7 13 13 F 1.39899 * 113.53596 * 270.80693 * 12 11 9 14 14 F 1.39898 * 113.74166 * 139.94205 * 12 11 9 15 15 C 1.53774 * 113.61488 * 181.52790 * 9 7 6 16 16 C 1.46900 * 111.00327 * 289.55767 * 3 2 1 17 17 C 1.50700 * 109.47359 * 160.41570 * 16 3 2 18 18 O 1.21294 * 119.99900 * 354.43346 * 17 16 3 19 19 N 1.34773 * 119.99977 * 174.43601 * 17 16 3 20 20 C 1.37098 * 120.00037 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00210 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99767 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00551 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99721 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47198 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47156 * 120.00221 * 24 22 20 27 27 H 1.48499 * 109.47304 * 240.00257 * 24 22 20 28 28 H 1.08997 * 109.47240 * 306.25430 * 1 2 3 29 29 H 1.09002 * 109.46819 * 66.25161 * 1 2 3 30 30 H 1.09003 * 109.47313 * 186.24676 * 1 2 3 31 31 H 1.08997 * 109.47482 * 239.99587 * 2 1 3 32 32 H 1.08999 * 109.46848 * 120.00484 * 2 1 3 33 33 H 1.09001 * 109.47084 * 53.95364 * 4 3 2 34 34 H 1.09000 * 109.47445 * 173.95473 * 4 3 2 35 35 H 1.08999 * 109.47243 * 299.99321 * 5 4 3 36 36 H 1.08996 * 109.47405 * 60.00088 * 5 4 3 37 37 H 0.97000 * 119.99625 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.47786 * 69.66683 * 10 9 7 39 39 H 1.09006 * 109.47196 * 189.66892 * 10 9 7 40 40 H 1.09006 * 109.47212 * 309.66306 * 10 9 7 41 41 H 1.08997 * 113.61277 * 334.56264 * 11 9 7 42 42 H 1.09000 * 113.61660 * 105.46560 * 11 9 7 43 43 H 1.08998 * 113.61599 * 254.53093 * 15 9 7 44 44 H 1.08995 * 113.61786 * 25.43283 * 15 9 7 45 45 H 1.08994 * 109.46777 * 280.42167 * 16 3 2 46 46 H 1.09007 * 109.46857 * 40.41635 * 16 3 2 47 47 H 0.97003 * 119.99804 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00478 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4475 1.4385 0.3410 5 6 3.6436 0.9830 1.7885 6 7 5.0677 1.0358 2.1284 7 6 5.4803 0.6763 3.3600 8 8 4.6727 0.3094 4.1871 9 6 6.9453 0.7301 3.7095 10 6 7.5912 2.0714 3.3568 11 6 7.7424 -0.4872 3.2120 12 6 8.4971 -0.4399 4.5531 13 9 9.6338 0.3751 4.5260 14 9 8.7461 -1.7015 5.1041 15 6 7.2556 0.2537 5.1383 16 6 1.7624 2.0343 -1.2923 17 6 1.8193 3.5307 -1.1227 18 8 1.9507 4.0111 -0.0167 19 7 1.7243 4.3350 -2.1999 20 6 1.7766 5.6963 -2.0457 21 1 1.8936 6.1241 -1.0610 22 6 1.6791 6.5255 -3.1564 23 7 1.5363 6.0051 -4.3545 24 14 1.7497 8.3803 -2.9462 25 1 1.9130 8.7096 -1.5074 26 1 2.9017 8.9217 -3.7113 27 1 0.4912 8.9842 -3.4529 28 1 -0.3633 0.6077 0.8287 29 1 -0.3633 0.4139 -0.9407 30 1 -0.3634 -1.0216 0.1118 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 4.0052 0.7806 -0.3256 34 1 3.8097 2.4605 0.2295 35 1 3.0860 1.6409 2.4551 36 1 3.2815 -0.0390 1.9000 37 1 5.7136 1.3289 1.4668 38 1 7.2103 2.8448 4.0238 39 1 8.6727 1.9947 3.4696 40 1 7.3510 2.3304 2.3256 41 1 7.1357 -1.3836 3.0838 42 1 8.3716 -0.2737 2.3480 43 1 7.4925 1.0645 5.8271 44 1 6.5156 -0.4398 5.5377 45 1 2.5178 1.7213 -2.0129 46 1 0.7748 1.7469 -1.6531 47 1 1.6196 3.9508 -3.0844 48 1 1.4686 6.5839 -5.1299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731813842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:03 Heat of formation + Delta-G solvation = -145.873474 kcal Electronic energy + Delta-G solvation = -30820.684292 eV Core-core repulsion = 26161.282434 eV Total energy + Delta-G solvation = -4659.401858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.22887 -47.54274 -40.68720 -38.85656 -37.71865 -36.89746 -34.87615 -33.87601 -31.26443 -31.12006 -30.07272 -28.97535 -26.82504 -26.34404 -24.77101 -24.16449 -22.89168 -21.52160 -20.84850 -19.50075 -19.08671 -18.41042 -17.88419 -17.21153 -16.86598 -16.41741 -16.19615 -16.06361 -15.63183 -15.18191 -14.90793 -14.66713 -14.50224 -14.35817 -14.19313 -13.95699 -13.89119 -13.83790 -13.72376 -13.51924 -13.28086 -12.78102 -12.68258 -12.47206 -12.19904 -12.10440 -11.91238 -11.71555 -11.67417 -11.53466 -11.44401 -11.33894 -11.17338 -10.91626 -10.88539 -10.65573 -10.36279 -10.24143 -9.97539 -9.51856 -9.17139 -8.51492 -7.99410 -7.94785 -6.43534 -3.84239 2.31746 2.79554 3.04688 3.14433 3.25273 3.32222 3.33788 3.75054 3.75714 3.89175 3.89812 4.05147 4.22813 4.51640 4.63163 4.82620 4.92516 4.98191 4.99275 5.05039 5.08440 5.14790 5.23373 5.24297 5.37014 5.39620 5.40458 5.49004 5.57871 5.63592 5.66105 5.74157 5.76909 5.94509 6.04668 6.06034 6.08486 6.24501 6.27461 6.37181 7.14392 7.26519 7.29268 7.53583 7.98827 8.05030 8.60557 9.17071 9.53379 10.05450 10.74342 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.002173 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.056654 B =12883.125348 C =14536.295293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.510 5.510 4 C 0.050 3.950 5 C 0.124 3.876 6 N -0.720 5.720 7 C 0.534 3.466 8 O -0.534 6.534 9 C -0.104 4.104 10 C -0.141 4.141 11 C -0.148 4.148 12 C 0.257 3.743 13 F -0.176 7.176 14 F -0.188 7.188 15 C -0.139 4.139 16 C 0.045 3.955 17 C 0.443 3.557 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.401 0.599 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.514 -15.290 10.045 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 N -0.235 5.235 4 C -0.078 4.078 5 C 0.000 4.000 6 N -0.371 5.371 7 C 0.319 3.681 8 O -0.410 6.410 9 C -0.107 4.107 10 C -0.198 4.198 11 C -0.186 4.186 12 C 0.220 3.780 13 F -0.157 7.157 14 F -0.169 7.169 15 C -0.177 4.177 16 C -0.087 4.087 17 C 0.228 3.772 18 O -0.457 6.457 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.747 -14.880 11.577 21.701 hybrid contribution 0.842 0.384 -1.609 1.856 sum 11.589 -14.496 9.968 21.066 Atomic orbital electron populations 1.21800 0.94765 1.01232 1.02864 1.22209 0.96549 0.88922 1.00537 1.61406 1.15650 1.15464 1.30944 1.22196 0.89054 1.02573 0.94023 1.21388 0.80158 1.01764 0.96669 1.45897 1.09744 1.67579 1.13913 1.19835 0.89261 0.77060 0.81962 1.90724 1.55061 1.46798 1.48437 1.21871 0.93465 0.97478 0.97898 1.21801 1.01743 0.93327 1.02905 1.24165 0.98186 0.99450 0.96847 1.21965 0.82941 0.76162 0.96899 1.93004 1.53763 1.71891 1.97010 1.93023 1.95431 1.41359 1.87046 1.24073 0.94928 1.02057 0.96660 1.21924 1.02023 0.95058 0.89649 1.19783 0.84519 0.87325 0.85576 1.90529 1.54227 1.76043 1.24912 1.41896 1.64121 1.06561 1.07886 1.19729 1.46725 0.80802 0.95370 0.87913 1.25248 0.97416 1.00663 0.94675 1.69613 1.50273 1.36256 0.98284 0.85824 0.77730 0.82297 0.78644 1.19230 1.20806 1.20756 0.91418 0.92662 0.92567 0.95077 0.90629 0.95074 0.88882 0.89881 0.91574 0.76465 0.90711 0.90178 0.91004 0.86536 0.87756 0.88100 0.85601 0.93326 0.88942 0.77586 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.84 37.16 0.37 -1.37 16 2 C 0.05 0.55 5.55 -3.83 -0.02 0.53 16 3 N -0.51 -7.81 4.00 -236.08 -0.95 -8.76 16 4 C 0.05 0.68 4.72 -3.82 -0.02 0.67 16 5 C 0.12 1.57 5.63 -4.04 -0.02 1.55 16 6 N -0.72 -7.51 5.44 -60.29 -0.33 -7.84 16 7 C 0.53 5.99 6.91 -10.99 -0.08 5.91 16 8 O -0.53 -7.99 15.91 5.55 0.09 -7.90 16 9 C -0.10 -0.84 1.25 -154.85 -0.19 -1.03 16 10 C -0.14 -0.98 8.95 37.16 0.33 -0.65 16 11 C -0.15 -1.00 7.01 -25.83 -0.18 -1.18 16 12 C 0.26 2.11 3.27 -25.83 -0.08 2.03 16 13 F -0.18 -1.57 15.52 2.25 0.03 -1.53 16 14 F -0.19 -1.84 17.41 2.25 0.04 -1.80 16 15 C -0.14 -1.14 6.77 -25.92 -0.18 -1.32 16 16 C 0.04 0.75 5.32 -4.98 -0.03 0.72 16 17 C 0.44 10.02 7.33 -10.99 -0.08 9.94 16 18 O -0.57 -14.99 15.08 5.55 0.08 -14.91 16 19 N -0.57 -13.93 5.29 -10.96 -0.06 -13.99 16 20 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 24 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.65 6.67 -51.93 -0.35 0.31 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.08 0.84 5.97 -51.93 -0.31 0.53 16 33 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.09 1.53 6.88 -51.93 -0.36 1.17 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 0.81 6.30 -51.93 -0.33 0.49 16 37 H 0.40 3.25 7.46 -40.82 -0.30 2.95 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.52 6.20 -51.93 -0.32 0.19 16 40 H 0.07 0.45 7.11 -51.93 -0.37 0.08 16 41 H 0.12 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.13 1.13 7.45 -51.93 -0.39 0.74 16 45 H 0.05 0.74 8.00 -51.93 -0.42 0.32 16 46 H 0.09 1.43 6.25 -51.93 -0.32 1.11 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -32.66 395.02 -6.94 -39.60 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.09 Total: 10.83 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.42 Total: 8.05 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.61 Total: -53.99 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.17 Total: -22.81 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.66 -6.94 -39.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731813842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.269 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds