Wall clock time and date at job start Wed Apr 1 2020 04:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47358 * 2 1 4 4 C 1.46898 * 111.00285 * 165.60158 * 3 2 1 5 5 C 1.53003 * 109.46995 * 293.95603 * 4 3 2 6 6 N 1.46504 * 109.47159 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00245 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00260 * 179.97438 * 7 6 5 10 10 C 1.52997 * 112.84464 * 50.33393 * 9 7 6 11 11 C 1.53777 * 113.61601 * 279.14020 * 9 7 6 12 12 C 1.53961 * 87.01717 * 220.04579 * 11 9 7 13 13 F 1.39899 * 113.53596 * 270.80693 * 12 11 9 14 14 F 1.39898 * 113.74166 * 139.94205 * 12 11 9 15 15 C 1.53774 * 113.61488 * 181.52790 * 9 7 6 16 16 C 1.46900 * 111.00327 * 289.55767 * 3 2 1 17 17 C 1.50700 * 109.47359 * 160.41570 * 16 3 2 18 18 O 1.21294 * 119.99900 * 354.43346 * 17 16 3 19 19 N 1.34773 * 119.99977 * 174.43601 * 17 16 3 20 20 C 1.37098 * 120.00037 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00210 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99767 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00551 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99721 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47198 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47156 * 120.00221 * 24 22 20 27 27 H 1.48499 * 109.47304 * 240.00257 * 24 22 20 28 28 H 1.08997 * 109.47240 * 306.25430 * 1 2 3 29 29 H 1.09002 * 109.46819 * 66.25161 * 1 2 3 30 30 H 1.09003 * 109.47313 * 186.24676 * 1 2 3 31 31 H 1.08997 * 109.47482 * 239.99587 * 2 1 3 32 32 H 1.08999 * 109.46848 * 120.00484 * 2 1 3 33 33 H 1.09001 * 109.47084 * 53.95364 * 4 3 2 34 34 H 1.09000 * 109.47445 * 173.95473 * 4 3 2 35 35 H 1.08999 * 109.47243 * 299.99321 * 5 4 3 36 36 H 1.08996 * 109.47405 * 60.00088 * 5 4 3 37 37 H 0.97000 * 119.99625 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.47786 * 69.66683 * 10 9 7 39 39 H 1.09006 * 109.47196 * 189.66892 * 10 9 7 40 40 H 1.09006 * 109.47212 * 309.66306 * 10 9 7 41 41 H 1.08997 * 113.61277 * 334.56264 * 11 9 7 42 42 H 1.09000 * 113.61660 * 105.46560 * 11 9 7 43 43 H 1.08998 * 113.61599 * 254.53093 * 15 9 7 44 44 H 1.08995 * 113.61786 * 25.43283 * 15 9 7 45 45 H 1.08994 * 109.46777 * 280.42167 * 16 3 2 46 46 H 1.09007 * 109.46857 * 40.41635 * 16 3 2 47 47 H 0.97003 * 119.99804 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00478 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4475 1.4385 0.3410 5 6 3.6436 0.9830 1.7885 6 7 5.0677 1.0358 2.1284 7 6 5.4803 0.6763 3.3600 8 8 4.6727 0.3094 4.1871 9 6 6.9453 0.7301 3.7095 10 6 7.5912 2.0714 3.3568 11 6 7.7424 -0.4872 3.2120 12 6 8.4971 -0.4399 4.5531 13 9 9.6338 0.3751 4.5260 14 9 8.7461 -1.7015 5.1041 15 6 7.2556 0.2537 5.1383 16 6 1.7624 2.0343 -1.2923 17 6 1.8193 3.5307 -1.1227 18 8 1.9507 4.0111 -0.0167 19 7 1.7243 4.3350 -2.1999 20 6 1.7766 5.6963 -2.0457 21 1 1.8936 6.1241 -1.0610 22 6 1.6791 6.5255 -3.1564 23 7 1.5363 6.0051 -4.3545 24 14 1.7497 8.3803 -2.9462 25 1 1.9130 8.7096 -1.5074 26 1 2.9017 8.9217 -3.7113 27 1 0.4912 8.9842 -3.4529 28 1 -0.3633 0.6077 0.8287 29 1 -0.3633 0.4139 -0.9407 30 1 -0.3634 -1.0216 0.1118 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 4.0052 0.7806 -0.3256 34 1 3.8097 2.4605 0.2295 35 1 3.0860 1.6409 2.4551 36 1 3.2815 -0.0390 1.9000 37 1 5.7136 1.3289 1.4668 38 1 7.2103 2.8448 4.0238 39 1 8.6727 1.9947 3.4696 40 1 7.3510 2.3304 2.3256 41 1 7.1357 -1.3836 3.0838 42 1 8.3716 -0.2737 2.3480 43 1 7.4925 1.0645 5.8271 44 1 6.5156 -0.4398 5.5377 45 1 2.5178 1.7213 -2.0129 46 1 0.7748 1.7469 -1.6531 47 1 1.6196 3.9508 -3.0844 48 1 1.4686 6.5839 -5.1299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731813842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:00 Heat of formation + Delta-G solvation = -169.297603 kcal Electronic energy + Delta-G solvation = -30821.700039 eV Core-core repulsion = 26161.282434 eV Total energy + Delta-G solvation = -4660.417605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.91317 -48.24074 -41.53213 -40.38707 -38.75050 -38.12188 -35.97187 -35.77385 -33.23509 -32.08422 -31.05252 -29.94047 -27.81589 -27.34747 -26.13820 -25.30377 -23.87303 -22.37614 -22.00893 -20.90155 -20.19161 -19.80917 -19.11886 -17.91912 -17.85425 -17.63957 -17.16533 -17.05403 -16.64770 -16.56778 -16.32850 -15.99189 -15.54082 -15.34497 -15.21227 -15.15656 -14.96395 -14.87853 -14.60332 -14.45674 -14.35784 -14.04116 -13.51803 -13.41622 -13.34919 -13.26390 -12.99642 -12.96890 -12.90292 -12.76054 -12.43718 -12.37509 -12.29605 -12.12994 -12.11204 -12.04940 -11.66493 -11.49867 -11.45793 -10.90190 -10.28710 -10.15791 -9.96836 -9.19589 -8.44213 -5.92074 1.37200 1.42659 1.43570 1.56119 1.91403 2.10510 2.30077 2.39236 2.69480 2.84060 3.09251 3.11658 3.23042 3.33261 3.48172 3.73836 3.86830 3.99973 4.03038 4.13859 4.25749 4.32429 4.40277 4.40688 4.44795 4.50063 4.56669 4.59238 4.61623 4.71596 4.80100 4.82529 4.87461 4.94813 4.96568 5.03956 5.10784 5.20942 5.31607 5.41829 5.43817 5.89939 6.09990 6.21638 6.43535 6.64658 7.11463 7.17095 7.61491 8.17928 8.73402 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.002173 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.056654 B =12883.125348 C =14536.295293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.536 5.536 4 C 0.058 3.942 5 C 0.136 3.864 6 N -0.711 5.711 7 C 0.534 3.466 8 O -0.575 6.575 9 C -0.098 4.098 10 C -0.139 4.139 11 C -0.136 4.136 12 C 0.255 3.745 13 F -0.179 7.179 14 F -0.198 7.198 15 C -0.143 4.143 16 C 0.059 3.941 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.578 5.578 20 C -0.327 4.327 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.989 3.011 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.414 0.586 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 -16.364 8.860 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.262 5.262 4 C -0.071 4.071 5 C 0.012 3.988 6 N -0.362 5.362 7 C 0.320 3.680 8 O -0.455 6.455 9 C -0.101 4.101 10 C -0.196 4.196 11 C -0.174 4.174 12 C 0.219 3.781 13 F -0.160 7.160 14 F -0.178 7.178 15 C -0.182 4.182 16 C -0.072 4.072 17 C 0.230 3.770 18 O -0.499 6.499 19 N -0.216 5.216 20 C -0.457 4.457 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.251 0.749 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.737 -15.972 10.356 22.363 hybrid contribution 0.519 0.679 -1.172 1.451 sum 12.256 -15.293 9.184 21.643 Atomic orbital electron populations 1.21807 0.94643 1.02374 1.01752 1.22282 0.96604 0.87012 1.02017 1.61318 1.16831 1.17740 1.30272 1.22081 0.88688 1.01336 0.94965 1.21113 0.81119 1.01229 0.95387 1.45801 1.09109 1.67103 1.14229 1.20353 0.90300 0.75930 0.81417 1.90707 1.56476 1.48691 1.49585 1.21830 0.91385 0.98861 0.98055 1.21828 1.02164 0.92326 1.03327 1.24169 0.97684 0.98720 0.96812 1.22038 0.82656 0.75649 0.97788 1.92997 1.53957 1.71945 1.97068 1.93003 1.95479 1.42023 1.87338 1.24094 0.94861 1.02179 0.97020 1.21751 1.03835 0.90470 0.91178 1.20857 0.82040 0.89790 0.84354 1.90503 1.55387 1.77580 1.26435 1.41959 1.64955 1.06030 1.08621 1.19636 1.48790 0.82530 0.94710 0.90519 1.25970 0.96566 1.04540 0.94207 1.69667 1.50191 1.37692 0.98703 0.84929 0.78262 0.77332 0.78180 1.19932 1.19577 1.19839 0.93566 0.92977 0.90048 0.92868 0.89642 0.91989 0.92100 0.93521 0.90634 0.74873 0.91431 0.89161 0.90015 0.86043 0.85375 0.87469 0.86608 0.90840 0.87287 0.77093 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.84 71.98 0.71 -2.45 16 2 C 0.05 1.03 5.55 86.30 0.48 1.50 16 3 N -0.54 -15.78 4.00 -900.82 -3.61 -19.39 16 4 C 0.06 1.51 4.72 86.30 0.41 1.92 16 5 C 0.14 3.40 5.63 86.38 0.49 3.89 16 6 N -0.71 -14.16 5.44 -463.05 -2.52 -16.68 16 7 C 0.53 11.67 6.91 87.66 0.61 12.27 16 8 O -0.58 -17.43 15.91 -3.04 -0.05 -17.48 16 9 C -0.10 -1.47 1.25 -52.41 -0.07 -1.53 16 10 C -0.14 -1.74 8.95 71.98 0.64 -1.09 16 11 C -0.14 -1.53 7.01 31.18 0.22 -1.31 16 12 C 0.26 3.84 3.27 31.18 0.10 3.94 16 13 F -0.18 -2.89 15.52 44.97 0.70 -2.20 16 14 F -0.20 -3.67 17.41 44.97 0.78 -2.89 16 15 C -0.14 -2.27 6.77 31.12 0.21 -2.06 16 16 C 0.06 1.89 5.32 85.56 0.46 2.35 16 17 C 0.44 20.24 7.33 87.66 0.64 20.89 16 18 O -0.61 -33.09 15.08 -3.07 -0.05 -33.14 16 19 N -0.58 -28.76 5.29 -306.99 -1.62 -30.38 16 20 C -0.33 -18.21 9.68 84.04 0.81 -17.40 16 21 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 24 Si 0.99 42.44 29.55 68.60 2.03 44.46 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.13 6.67 -2.39 -0.02 1.12 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.09 1.69 5.97 -2.39 -0.01 1.67 16 33 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.06 2.01 6.88 -2.39 -0.02 1.99 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.76 6.30 -2.39 -0.02 1.75 16 37 H 0.41 6.01 7.46 -92.71 -0.69 5.32 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.98 6.20 -2.38 -0.01 0.96 16 40 H 0.08 0.85 7.11 -2.38 -0.02 0.84 16 41 H 0.12 1.30 8.09 -2.39 -0.02 1.28 16 42 H 0.13 0.87 8.10 -2.39 -0.02 0.85 16 43 H 0.11 1.52 8.10 -2.39 -0.02 1.50 16 44 H 0.12 2.11 7.45 -2.39 -0.02 2.09 16 45 H 0.07 2.03 8.00 -2.39 -0.02 2.01 16 46 H 0.11 3.17 6.25 -2.38 -0.01 3.16 16 47 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 48 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -72.45 395.02 1.71 -70.75 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.41 Total: 34.82 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 6.18 Total: 20.68 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -7.47 Total: -115.01 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.09 Total: -50.61 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 1.48 Total: -5.08 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -72.45 1.71 -70.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731813842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.552 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds