Wall clock time and date at job start Wed Apr 1 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99528 * 2 1 4 4 C 1.50695 * 109.47477 * 293.95164 * 3 2 1 5 5 O 1.21288 * 119.99944 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00100 * 180.02562 * 4 3 2 7 7 C 1.37096 * 119.99840 * 180.02562 * 6 4 3 8 8 H 1.07994 * 120.00394 * 0.02562 * 7 6 4 9 9 C 1.38957 * 119.99983 * 179.97438 * 7 6 4 10 10 N 1.31414 * 119.99431 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00137 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47093 * 60.00133 * 11 9 7 13 13 H 1.48500 * 109.46946 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47033 * 300.00342 * 11 9 7 15 15 C 1.46899 * 111.00075 * 123.95496 * 2 1 3 16 16 C 1.52996 * 109.46781 * 163.99973 * 15 2 1 17 17 H 1.08995 * 110.89303 * 60.60216 * 16 15 2 18 18 C 1.55157 * 111.00536 * 296.71245 * 16 15 2 19 19 C 1.54320 * 102.94355 * 206.42959 * 18 16 15 20 20 N 1.47016 * 107.27303 * 22.19288 * 19 18 16 21 21 C 1.34782 * 125.64882 * 181.01902 * 20 19 18 22 22 O 1.21279 * 119.99828 * 180.02562 * 21 20 19 23 23 C 1.50695 * 120.00050 * 0.30806 * 21 20 19 24 24 C 1.52996 * 109.47101 * 179.72277 * 23 21 20 25 25 C 1.53002 * 109.46979 * 179.97438 * 24 23 21 26 26 F 1.39899 * 109.47164 * 64.99796 * 25 24 23 27 27 F 1.39907 * 109.47042 * 185.00111 * 25 24 23 28 28 C 1.47426 * 108.70195 * 1.29045 * 20 19 18 29 29 H 1.08993 * 109.47490 * 302.08403 * 1 2 3 30 30 H 1.09001 * 109.47120 * 62.08707 * 1 2 3 31 31 H 1.09003 * 109.46686 * 182.08265 * 1 2 3 32 32 H 1.09006 * 109.46937 * 53.95597 * 3 2 1 33 33 H 1.09000 * 109.46849 * 173.94940 * 3 2 1 34 34 H 0.96995 * 120.00068 * 0.02562 * 6 4 3 35 35 H 0.97001 * 119.99304 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.46845 * 43.99584 * 15 2 1 37 37 H 1.09007 * 109.46522 * 283.99810 * 15 2 1 38 38 H 1.09002 * 110.71513 * 88.06634 * 18 16 15 39 39 H 1.09000 * 110.72068 * 324.79217 * 18 16 15 40 40 H 1.09003 * 109.88342 * 262.77435 * 19 18 16 41 41 H 1.09000 * 109.88438 * 141.61585 * 19 18 16 42 42 H 1.09007 * 109.46711 * 299.72122 * 23 21 20 43 43 H 1.08997 * 109.47223 * 59.71821 * 23 21 20 44 44 H 1.09001 * 109.47013 * 299.99145 * 24 23 21 45 45 H 1.08997 * 109.47455 * 59.99685 * 24 23 21 46 46 H 1.09007 * 109.47420 * 304.99578 * 25 24 23 47 47 H 1.08998 * 110.37164 * 94.48373 * 28 20 19 48 48 H 1.09010 * 110.36271 * 216.80280 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0047 1.4457 -2.1407 6 7 2.0188 3.3200 -1.5236 7 6 1.6922 3.9348 -2.7046 8 1 1.1286 3.3995 -3.4543 9 6 2.0855 5.2472 -2.9367 10 7 2.7709 5.8988 -2.0242 11 14 1.6411 6.0848 -4.5461 12 1 0.1639 6.1215 -4.6937 13 1 2.1737 7.4710 -4.5463 14 1 2.2329 5.3274 -5.6781 15 6 1.9955 -0.7660 1.1376 16 6 3.4727 -1.0841 0.8981 17 1 4.0569 -0.1689 0.8027 18 6 3.6515 -1.9906 -0.3484 19 6 4.9705 -2.7337 -0.0490 20 7 5.1731 -2.6943 1.4065 21 6 6.2244 -3.2179 2.0678 22 8 6.2877 -3.1266 3.2754 23 6 7.3243 -3.9111 1.3059 24 6 8.3913 -4.4036 2.2856 25 6 9.5077 -5.1080 1.5121 26 9 10.1596 -4.1837 0.6887 27 9 10.4252 -5.6574 2.4142 28 6 4.0326 -1.9930 2.0238 29 1 -0.3634 0.5458 0.8706 30 1 -0.3633 0.4811 -0.9081 31 1 -0.3633 -1.0270 0.0373 32 1 1.5610 1.9274 0.8310 33 1 3.0796 1.3445 0.1083 34 1 2.5247 3.8009 -0.8501 35 1 3.0457 6.8148 -2.1863 36 1 1.4355 -1.6955 1.2399 37 1 1.8936 -0.1780 2.0498 38 1 3.7444 -1.3889 -1.2525 39 1 2.8237 -2.6943 -0.4354 40 1 5.7991 -2.2355 -0.5523 41 1 4.8979 -3.7679 -0.3854 42 1 6.9103 -4.7605 0.7624 43 1 7.7737 -3.2124 0.6002 44 1 8.8054 -3.5542 2.8289 45 1 7.9419 -5.1023 2.9912 46 1 9.0804 -5.9021 0.8996 47 1 3.2772 -2.7089 2.3476 48 1 4.3697 -1.3888 2.8662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732072502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:13 Heat of formation + Delta-G solvation = -175.255233 kcal Electronic energy + Delta-G solvation = -30261.168237 eV Core-core repulsion = 25600.492290 eV Total energy + Delta-G solvation = -4660.675947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -49.32862 -47.34126 -40.42767 -38.84356 -37.89769 -36.13371 -34.24619 -33.88831 -32.19062 -31.26233 -29.68151 -28.15705 -27.92321 -26.08957 -24.69117 -23.52720 -22.51165 -22.06623 -20.37096 -19.54074 -19.05660 -18.02227 -17.90347 -17.78709 -17.34708 -16.82366 -16.20486 -16.14685 -15.64447 -15.27608 -14.99254 -14.87174 -14.47387 -14.25220 -14.00848 -13.83104 -13.71983 -13.69422 -13.58723 -13.41698 -13.12212 -12.85768 -12.70028 -12.53514 -12.50419 -12.13461 -11.83026 -11.73886 -11.53712 -11.48095 -11.32832 -11.30327 -11.09763 -11.02331 -10.91503 -10.56204 -10.45603 -10.23125 -10.17948 -9.48678 -8.93073 -8.47214 -8.00208 -7.87475 -6.43368 -3.84285 2.30425 2.58544 3.18251 3.24408 3.28312 3.40943 3.77558 3.87307 3.89852 3.99414 4.10673 4.18811 4.34755 4.43176 4.58305 4.67483 4.68567 4.82537 4.95272 4.98612 5.05913 5.12407 5.21761 5.28759 5.34048 5.38693 5.49461 5.52269 5.53596 5.63115 5.69096 5.75272 5.79868 5.90043 5.94427 5.98987 6.14191 6.20433 6.26702 6.52699 7.19588 7.23467 7.34906 7.53265 7.82824 8.04399 8.60042 9.16366 9.52797 10.04584 10.74249 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.001877 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.467227 B =14910.946308 C =16297.376656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.515 5.515 3 C 0.043 3.957 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.065 3.935 16 C -0.097 4.097 17 H 0.087 0.913 18 C -0.111 4.111 19 C 0.094 3.906 20 N -0.617 5.617 21 C 0.530 3.470 22 O -0.543 6.543 23 C -0.138 4.138 24 C -0.157 4.157 25 C 0.262 3.738 26 F -0.205 7.205 27 F -0.206 7.206 28 C 0.111 3.889 29 H 0.014 0.986 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.069 0.931 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.871 -20.674 8.239 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.239 5.239 3 C -0.088 4.088 4 C 0.229 3.771 5 O -0.462 6.462 6 N -0.201 5.201 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.064 4.064 16 C -0.117 4.117 17 H 0.105 0.895 18 C -0.149 4.149 19 C -0.029 4.029 20 N -0.351 5.351 21 C 0.319 3.681 22 O -0.421 6.421 23 C -0.178 4.178 24 C -0.195 4.195 25 C 0.208 3.792 26 F -0.187 7.187 27 F -0.187 7.187 28 C -0.012 4.012 29 H 0.033 0.967 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.225 0.775 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.129 0.871 47 H 0.088 0.912 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.814 -21.082 7.914 23.836 hybrid contribution 0.008 1.299 0.343 1.344 sum 7.822 -19.783 8.257 22.819 Atomic orbital electron populations 1.22536 0.86497 1.01091 1.02320 1.61559 1.08566 1.12773 1.40985 1.21936 1.00711 0.89030 0.97142 1.19724 0.85472 0.82920 0.88939 1.90475 1.43937 1.64662 1.47155 1.41871 1.49372 1.10815 1.18045 1.19636 1.32999 0.95451 0.94799 0.87967 1.25267 0.96823 0.96669 0.99213 1.69606 1.37920 1.12317 1.34459 0.85923 0.78887 0.77944 0.81493 1.19937 1.21001 1.19888 1.22031 0.93854 0.98385 0.92119 1.22422 0.96535 0.98366 0.94376 0.89459 1.22532 0.95141 0.98130 0.99102 1.22248 0.99588 1.00976 0.80082 1.48514 1.21581 1.56536 1.08464 1.20071 0.81806 0.78668 0.87542 1.90729 1.78090 1.59106 1.14140 1.21550 0.94926 1.02176 0.99128 1.22421 0.94677 1.03538 0.98871 1.21939 0.84261 0.88777 0.84186 1.93003 1.83653 1.68736 1.73288 1.92999 1.69881 1.86255 1.69563 1.22295 0.87641 0.94805 0.96411 0.96731 0.88442 0.92334 0.93530 0.89500 0.77535 0.91818 0.90558 0.94602 0.88854 0.90320 0.91075 0.91305 0.88190 0.87765 0.88519 0.87898 0.87123 0.91234 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.19 60.07 0.55 0.90 16 2 N -0.52 -7.69 4.20 -244.37 -1.03 -8.71 16 3 C 0.04 0.72 5.30 -4.98 -0.03 0.70 16 4 C 0.44 10.01 7.52 -10.99 -0.08 9.93 16 5 O -0.58 -14.83 13.88 5.55 0.08 -14.75 16 6 N -0.56 -13.91 5.29 -10.97 -0.06 -13.97 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 10 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 11 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.06 0.72 4.44 -3.83 -0.02 0.70 16 16 C -0.10 -0.99 3.00 -88.35 -0.27 -1.26 16 17 H 0.09 0.99 6.72 -51.93 -0.35 0.64 16 18 C -0.11 -1.05 6.17 -24.90 -0.15 -1.21 16 19 C 0.09 0.72 6.48 -3.07 -0.02 0.70 16 20 N -0.62 -5.87 3.32 -170.38 -0.57 -6.43 16 21 C 0.53 5.41 7.85 -10.99 -0.09 5.32 16 22 O -0.54 -7.55 16.24 5.56 0.09 -7.46 16 23 C -0.14 -0.87 4.81 -27.89 -0.13 -1.00 16 24 C -0.16 -1.05 4.73 -26.73 -0.13 -1.17 16 25 C 0.26 1.59 5.29 37.16 0.20 1.79 16 26 F -0.21 -1.71 17.02 2.25 0.04 -1.68 16 27 F -0.21 -1.75 17.34 2.25 0.04 -1.71 16 28 C 0.11 1.09 6.38 -2.41 -0.02 1.07 16 29 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 30 H 0.10 1.82 5.92 -51.93 -0.31 1.51 16 31 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 32 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.09 1.32 6.46 -51.93 -0.34 0.99 16 34 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 37 H 0.04 0.38 8.05 -51.93 -0.42 -0.03 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.60 7.94 -51.93 -0.41 0.19 16 44 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.10 0.68 8.10 -51.93 -0.42 0.25 16 46 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 48 H 0.08 0.84 8.04 -51.92 -0.42 0.42 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -33.03 399.05 -7.64 -40.67 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.53 Total: 7.14 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -0.42 Total: 8.66 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.93 Total: -52.61 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.17 Total: -22.21 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.03 -7.64 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732072502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.585 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds