Wall clock time and date at job start Wed Apr 1 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99528 * 2 1 4 4 C 1.50695 * 109.47477 * 293.95164 * 3 2 1 5 5 O 1.21288 * 119.99944 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00100 * 180.02562 * 4 3 2 7 7 C 1.37096 * 119.99840 * 180.02562 * 6 4 3 8 8 H 1.07994 * 120.00394 * 0.02562 * 7 6 4 9 9 C 1.38957 * 119.99983 * 179.97438 * 7 6 4 10 10 N 1.31414 * 119.99431 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00137 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47093 * 60.00133 * 11 9 7 13 13 H 1.48500 * 109.46946 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47033 * 300.00342 * 11 9 7 15 15 C 1.46899 * 111.00075 * 123.95496 * 2 1 3 16 16 C 1.52996 * 109.46781 * 163.99973 * 15 2 1 17 17 H 1.08995 * 110.89303 * 60.60216 * 16 15 2 18 18 C 1.55157 * 111.00536 * 296.71245 * 16 15 2 19 19 C 1.54320 * 102.94355 * 206.42959 * 18 16 15 20 20 N 1.47016 * 107.27303 * 22.19288 * 19 18 16 21 21 C 1.34782 * 125.64882 * 181.01902 * 20 19 18 22 22 O 1.21279 * 119.99828 * 180.02562 * 21 20 19 23 23 C 1.50695 * 120.00050 * 0.30806 * 21 20 19 24 24 C 1.52996 * 109.47101 * 179.72277 * 23 21 20 25 25 C 1.53002 * 109.46979 * 179.97438 * 24 23 21 26 26 F 1.39899 * 109.47164 * 64.99796 * 25 24 23 27 27 F 1.39907 * 109.47042 * 185.00111 * 25 24 23 28 28 C 1.47426 * 108.70195 * 1.29045 * 20 19 18 29 29 H 1.08993 * 109.47490 * 302.08403 * 1 2 3 30 30 H 1.09001 * 109.47120 * 62.08707 * 1 2 3 31 31 H 1.09003 * 109.46686 * 182.08265 * 1 2 3 32 32 H 1.09006 * 109.46937 * 53.95597 * 3 2 1 33 33 H 1.09000 * 109.46849 * 173.94940 * 3 2 1 34 34 H 0.96995 * 120.00068 * 0.02562 * 6 4 3 35 35 H 0.97001 * 119.99304 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.46845 * 43.99584 * 15 2 1 37 37 H 1.09007 * 109.46522 * 283.99810 * 15 2 1 38 38 H 1.09002 * 110.71513 * 88.06634 * 18 16 15 39 39 H 1.09000 * 110.72068 * 324.79217 * 18 16 15 40 40 H 1.09003 * 109.88342 * 262.77435 * 19 18 16 41 41 H 1.09000 * 109.88438 * 141.61585 * 19 18 16 42 42 H 1.09007 * 109.46711 * 299.72122 * 23 21 20 43 43 H 1.08997 * 109.47223 * 59.71821 * 23 21 20 44 44 H 1.09001 * 109.47013 * 299.99145 * 24 23 21 45 45 H 1.08997 * 109.47455 * 59.99685 * 24 23 21 46 46 H 1.09007 * 109.47420 * 304.99578 * 25 24 23 47 47 H 1.08998 * 110.37164 * 94.48373 * 28 20 19 48 48 H 1.09010 * 110.36271 * 216.80280 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0047 1.4457 -2.1407 6 7 2.0188 3.3200 -1.5236 7 6 1.6922 3.9348 -2.7046 8 1 1.1286 3.3995 -3.4543 9 6 2.0855 5.2472 -2.9367 10 7 2.7709 5.8988 -2.0242 11 14 1.6411 6.0848 -4.5461 12 1 0.1639 6.1215 -4.6937 13 1 2.1737 7.4710 -4.5463 14 1 2.2329 5.3274 -5.6781 15 6 1.9955 -0.7660 1.1376 16 6 3.4727 -1.0841 0.8981 17 1 4.0569 -0.1689 0.8027 18 6 3.6515 -1.9906 -0.3484 19 6 4.9705 -2.7337 -0.0490 20 7 5.1731 -2.6943 1.4065 21 6 6.2244 -3.2179 2.0678 22 8 6.2877 -3.1266 3.2754 23 6 7.3243 -3.9111 1.3059 24 6 8.3913 -4.4036 2.2856 25 6 9.5077 -5.1080 1.5121 26 9 10.1596 -4.1837 0.6887 27 9 10.4252 -5.6574 2.4142 28 6 4.0326 -1.9930 2.0238 29 1 -0.3634 0.5458 0.8706 30 1 -0.3633 0.4811 -0.9081 31 1 -0.3633 -1.0270 0.0373 32 1 1.5610 1.9274 0.8310 33 1 3.0796 1.3445 0.1083 34 1 2.5247 3.8009 -0.8501 35 1 3.0457 6.8148 -2.1863 36 1 1.4355 -1.6955 1.2399 37 1 1.8936 -0.1780 2.0498 38 1 3.7444 -1.3889 -1.2525 39 1 2.8237 -2.6943 -0.4354 40 1 5.7991 -2.2355 -0.5523 41 1 4.8979 -3.7679 -0.3854 42 1 6.9103 -4.7605 0.7624 43 1 7.7737 -3.2124 0.6002 44 1 8.8054 -3.5542 2.8289 45 1 7.9419 -5.1023 2.9912 46 1 9.0804 -5.9021 0.8996 47 1 3.2772 -2.7089 2.3476 48 1 4.3697 -1.3888 2.8662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732072502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:12 Heat of formation + Delta-G solvation = -197.882553 kcal Electronic energy + Delta-G solvation = -30262.149431 eV Core-core repulsion = 25600.492290 eV Total energy + Delta-G solvation = -4661.657141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.87550 -47.90829 -41.21156 -40.34796 -39.00224 -37.35248 -35.82638 -34.82785 -33.25344 -33.05851 -30.42868 -29.54749 -28.69935 -27.02856 -26.44630 -24.29837 -23.34275 -22.90554 -21.43922 -20.71486 -20.17981 -19.77638 -18.53013 -18.48435 -18.02845 -17.93116 -17.25219 -16.83254 -16.67833 -16.61505 -16.31397 -16.04072 -15.72524 -15.35809 -15.16647 -14.99177 -14.82802 -14.57695 -14.46868 -14.27530 -13.83737 -13.76441 -13.63362 -13.55312 -13.42550 -13.28304 -13.05292 -13.02802 -12.72344 -12.62479 -12.43804 -12.38213 -12.24590 -12.11878 -11.93731 -11.83239 -11.78166 -11.47826 -11.38782 -10.99438 -10.23143 -9.97720 -9.67719 -9.15340 -8.44340 -5.92638 1.40770 1.42509 1.53209 1.56340 1.90241 2.08934 2.29776 2.78732 2.91432 3.22670 3.33462 3.40592 3.50564 3.60153 3.69939 3.70622 3.83716 3.96124 4.21177 4.24587 4.29278 4.34646 4.38783 4.40144 4.46733 4.50972 4.55641 4.57329 4.67122 4.72379 4.79931 4.81528 4.85352 4.96082 5.01133 5.05656 5.19517 5.25237 5.35144 5.42686 5.43124 5.90717 6.09982 6.25246 6.49048 6.63348 7.08211 7.15724 7.59952 8.15701 8.72849 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.001877 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.467227 B =14910.946308 C =16297.376656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.527 5.527 3 C 0.056 3.944 4 C 0.444 3.556 5 O -0.611 6.611 6 N -0.577 5.577 7 C -0.329 4.329 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.273 1.273 14 H -0.271 1.271 15 C 0.069 3.931 16 C -0.094 4.094 17 H 0.074 0.926 18 C -0.109 4.109 19 C 0.097 3.903 20 N -0.619 5.619 21 C 0.523 3.477 22 O -0.589 6.589 23 C -0.130 4.130 24 C -0.153 4.153 25 C 0.260 3.740 26 F -0.219 7.219 27 F -0.222 7.222 28 C 0.114 3.886 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.394 0.606 35 H 0.276 0.724 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.156 0.844 47 H 0.080 0.920 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.071 -22.261 7.922 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.251 5.251 3 C -0.075 4.075 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.215 5.215 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.215 4.215 10 N -0.564 5.564 11 Si 0.815 3.185 12 H -0.197 1.197 13 H -0.198 1.198 14 H -0.196 1.196 15 C -0.059 4.059 16 C -0.113 4.113 17 H 0.092 0.908 18 C -0.147 4.147 19 C -0.025 4.025 20 N -0.352 5.352 21 C 0.314 3.686 22 O -0.470 6.470 23 C -0.169 4.169 24 C -0.192 4.192 25 C 0.207 3.793 26 F -0.201 7.201 27 F -0.203 7.203 28 C -0.009 4.009 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.154 0.846 43 H 0.131 0.869 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.173 0.827 47 H 0.099 0.901 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.016 -22.678 7.595 25.224 hybrid contribution -0.099 1.737 0.482 1.806 sum 7.917 -20.940 8.077 23.799 Atomic orbital electron populations 1.22425 0.86652 1.02404 1.00587 1.61506 1.08590 1.11662 1.43387 1.21779 1.01911 0.89988 0.93827 1.20746 0.83617 0.82121 0.90391 1.90457 1.44936 1.65272 1.48966 1.41960 1.50170 1.11733 1.17630 1.19614 1.34215 0.96330 0.95741 0.90148 1.26035 0.96404 0.96739 1.02323 1.69675 1.38246 1.12658 1.35792 0.85004 0.78598 0.77236 0.77615 1.19720 1.19769 1.19617 1.22090 0.94336 0.98627 0.90836 1.22323 0.95801 0.98097 0.95098 0.90808 1.22472 0.96514 0.97971 0.97726 1.22328 0.98738 1.02513 0.78900 1.48624 1.21322 1.55952 1.09261 1.20757 0.82328 0.78266 0.87244 1.90709 1.79070 1.60958 1.16245 1.21582 0.93420 1.03257 0.98639 1.22355 0.95072 1.02716 0.99055 1.22334 0.83343 0.89453 0.84135 1.92974 1.83995 1.69549 1.73582 1.92965 1.70571 1.86429 1.70375 1.22216 0.88105 0.94846 0.95716 0.95733 0.92586 0.89732 0.92076 0.87752 0.77234 0.91436 0.88557 0.93755 0.90879 0.89701 0.90329 0.88473 0.84555 0.86874 0.91066 0.87872 0.82657 0.90133 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.19 127.69 1.17 1.96 16 2 N -0.53 -15.03 4.20 -927.04 -3.89 -18.92 16 3 C 0.06 1.84 5.30 85.55 0.45 2.30 16 4 C 0.44 20.34 7.52 87.66 0.66 21.00 16 5 O -0.61 -32.15 13.88 -3.05 -0.04 -32.20 16 6 N -0.58 -29.08 5.29 -306.99 -1.62 -30.70 16 7 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 10 N -0.92 -49.64 13.05 21.67 0.28 -49.36 16 11 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 15 C 0.07 1.37 4.44 86.30 0.38 1.75 16 16 C -0.09 -1.74 3.00 -9.33 -0.03 -1.77 16 17 H 0.07 1.59 6.72 -2.39 -0.02 1.57 16 18 C -0.11 -1.84 6.17 31.78 0.20 -1.65 16 19 C 0.10 1.21 6.48 86.73 0.56 1.77 16 20 N -0.62 -10.50 3.32 -811.35 -2.70 -13.20 16 21 C 0.52 9.90 7.85 87.65 0.69 10.58 16 22 O -0.59 -16.27 16.24 -3.03 -0.05 -16.32 16 23 C -0.13 -1.30 4.81 29.85 0.14 -1.16 16 24 C -0.15 -1.85 4.73 30.59 0.14 -1.71 16 25 C 0.26 2.62 5.29 71.98 0.38 3.00 16 26 F -0.22 -3.31 17.02 44.97 0.77 -2.55 16 27 F -0.22 -3.53 17.34 44.97 0.78 -2.75 16 28 C 0.11 2.05 6.38 86.93 0.55 2.60 16 29 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 30 H 0.06 2.11 5.92 -2.39 -0.01 2.10 16 31 H 0.08 1.96 7.95 -2.39 -0.02 1.94 16 32 H 0.06 1.85 8.11 -2.38 -0.02 1.84 16 33 H 0.10 3.08 6.46 -2.39 -0.02 3.06 16 34 H 0.39 19.05 7.90 -92.71 -0.73 18.32 16 35 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 36 H 0.10 1.57 7.86 -2.39 -0.02 1.55 16 37 H 0.04 0.84 8.05 -2.38 -0.02 0.82 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.34 8.04 -2.39 -0.02 1.32 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 43 H 0.11 0.99 7.94 -2.39 -0.02 0.97 16 44 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 45 H 0.10 1.24 8.10 -2.39 -0.02 1.22 16 46 H 0.16 0.22 8.14 -2.38 -0.02 0.21 16 47 H 0.08 1.28 8.03 -2.39 -0.02 1.26 16 48 H 0.06 1.34 8.04 -2.38 -0.02 1.32 16 Total: -1.00 -74.22 399.05 2.38 -71.84 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.24 Total: 28.86 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 6.59 Total: 20.74 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -7.93 Total: -112.18 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.09 Total: -48.52 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 1.54 Total: -5.30 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -74.22 2.38 -71.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732072502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.042 kcal (2) G-P(sol) polarization free energy of solvation -74.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds