Wall clock time and date at job start Wed Apr 1 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00043 * 2 1 4 4 C 1.39027 * 120.00269 * 179.97438 * 2 1 3 5 5 C 1.39120 * 119.64022 * 5.00497 * 4 2 1 6 6 C 1.39497 * 118.92545 * 179.97438 * 5 4 2 7 7 C 1.48160 * 120.88165 * 179.97438 * 6 5 4 8 8 O 1.21517 * 120.00299 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00446 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00149 * 179.97438 * 9 7 6 11 11 C 1.53514 * 114.16836 * 204.99631 * 10 9 7 12 12 N 1.47482 * 87.93039 * 220.13972 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47457 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47104 * 239.99973 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 C 1.40025 * 118.24014 * 0.25060 * 6 5 4 27 27 C 1.37946 * 119.17143 * 359.52394 * 26 6 5 28 28 N 1.31916 * 121.00215 * 0.48754 * 27 26 6 29 29 H 1.09001 * 109.47652 * 270.00413 * 1 2 3 30 30 H 1.09001 * 109.47363 * 30.00207 * 1 2 3 31 31 H 1.09003 * 109.46694 * 150.00316 * 1 2 3 32 32 H 1.08996 * 109.47177 * 239.99750 * 3 2 1 33 33 H 1.08997 * 109.47004 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47471 * 119.99619 * 3 2 1 35 35 H 1.07990 * 120.53887 * 359.97438 * 5 4 2 36 36 H 0.96996 * 119.99685 * 359.97438 * 9 7 6 37 37 H 1.08999 * 113.25779 * 337.94959 * 10 9 7 38 38 H 1.08994 * 113.47382 * 105.36815 * 11 10 9 39 39 H 1.09003 * 113.47448 * 334.90723 * 11 10 9 40 40 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 41 41 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 42 42 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 43 43 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 44 44 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 45 45 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 46 46 H 1.07995 * 120.41012 * 179.75311 * 26 6 5 47 47 H 1.07998 * 119.49661 * 180.25445 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4610 -2.4022 -0.1044 6 6 2.1736 -3.6014 -0.1029 7 6 1.4730 -4.9024 -0.2119 8 8 0.2617 -4.9344 -0.3037 9 7 2.1790 -6.0505 -0.2081 10 6 1.4862 -7.3369 -0.3153 11 6 2.2591 -8.5191 0.2861 12 7 1.8105 -9.3276 -0.8629 13 6 2.8961 -10.1833 -1.3602 14 6 2.3436 -11.1642 -2.3621 15 8 1.1620 -11.1513 -2.6354 16 7 3.1629 -12.0550 -2.9553 17 6 2.6604 -12.9470 -3.8672 18 1 1.6080 -12.9360 -4.1098 19 6 3.5047 -13.8657 -4.4783 20 7 4.7851 -13.8794 -4.1826 21 14 2.8203 -15.0806 -5.7213 22 1 1.3601 -14.8597 -5.8770 23 1 3.4937 -14.8824 -7.0298 24 1 3.0627 -16.4660 -5.2446 25 6 1.7260 -8.0764 -1.6390 26 6 3.5680 -3.5434 0.0103 27 6 4.1843 -2.3130 0.1054 28 7 3.4795 -1.1979 0.1008 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 2.8241 1.3265 -0.8899 33 1 1.4892 2.0972 -0.0005 34 1 2.8241 1.3266 0.8900 35 1 0.3842 -2.4039 -0.1857 36 1 3.1458 -6.0250 -0.1344 37 1 0.4397 -7.2884 -0.0144 38 1 1.8575 -8.8600 1.2402 39 1 3.3377 -8.3639 0.3132 40 1 3.3410 -10.7270 -0.5268 41 1 3.6562 -9.5651 -1.8379 42 1 4.1079 -12.0651 -2.7370 43 1 5.3746 -14.5206 -4.6096 44 1 2.6623 -7.8032 -2.1256 45 1 0.8727 -8.0423 -2.3163 46 1 4.1540 -4.4506 0.0191 47 1 5.2599 -2.2620 0.1887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732112436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:22 Heat of formation + Delta-G solvation = 31.784146 kcal Electronic energy + Delta-G solvation = -28874.853794 eV Core-core repulsion = 24673.844935 eV Total energy + Delta-G solvation = -4201.008859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.10408 -40.39261 -39.01924 -37.70655 -36.89819 -34.39791 -33.84556 -32.90099 -31.26399 -30.88043 -29.79922 -28.69629 -26.02570 -25.94934 -25.69030 -24.56803 -23.20435 -22.54264 -20.70231 -20.30343 -19.25859 -18.42534 -17.91420 -17.27461 -16.53171 -16.32627 -16.10505 -16.03049 -15.79972 -15.35497 -15.19096 -14.93295 -14.60315 -14.51307 -14.31540 -14.20071 -13.79825 -13.65972 -13.24931 -13.05653 -12.93624 -12.72038 -12.65900 -12.56812 -12.29207 -12.03238 -11.64136 -11.53553 -11.25061 -11.08752 -10.68491 -10.52089 -10.48587 -10.33275 -10.21214 -10.11625 -9.81275 -9.50177 -9.25988 -8.87635 -8.22395 -8.00891 -7.95089 -6.40920 -3.81505 0.45146 0.90804 2.42201 2.63479 2.76307 3.17156 3.27675 3.35350 3.57911 3.90143 3.97336 4.10941 4.19548 4.28303 4.37621 4.46755 4.64693 4.68006 4.76064 4.83355 4.84448 4.93260 4.95293 5.14249 5.20823 5.22171 5.27695 5.30286 5.35357 5.37466 5.43825 5.56790 5.63138 5.65542 5.74483 5.82638 6.00102 6.03188 6.20551 6.28123 6.42905 6.47636 6.87785 7.06856 7.18394 7.56533 7.69912 7.86832 8.07317 8.63110 9.19748 9.55424 10.07909 10.77049 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.001587 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.354909 B =17643.236150 C =17867.753117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.618 5.618 3 C 0.106 3.894 4 C 0.398 3.602 5 C -0.180 4.180 6 C -0.044 4.044 7 C 0.560 3.440 8 O -0.525 6.525 9 N -0.709 5.709 10 C 0.117 3.883 11 C -0.013 4.013 12 N -0.434 5.434 13 C 0.011 3.989 14 C 0.446 3.554 15 O -0.573 6.573 16 N -0.567 5.567 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.008 4.008 26 C -0.207 4.207 27 C 0.148 3.852 28 N -0.529 5.529 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.146 0.854 36 H 0.401 0.599 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.136 0.864 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 28.470 11.907 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.332 5.332 3 C -0.037 4.037 4 C 0.164 3.836 5 C -0.206 4.206 6 C -0.055 4.055 7 C 0.346 3.654 8 O -0.401 6.401 9 N -0.360 5.360 10 C 0.012 3.988 11 C -0.143 4.143 12 N -0.156 5.156 13 C -0.121 4.121 14 C 0.231 3.769 15 O -0.456 6.456 16 N -0.205 5.205 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.138 4.138 26 C -0.230 4.230 27 C -0.009 4.009 28 N -0.247 5.247 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.237 0.763 37 H 0.150 0.850 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.153 0.847 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.684 28.793 11.686 31.082 hybrid contribution 1.409 -1.091 -0.684 1.908 sum 0.725 27.703 11.003 29.816 Atomic orbital electron populations 1.21819 0.78045 1.03459 1.01901 1.46228 1.05275 1.02963 1.78724 1.21516 0.96450 0.83579 1.02126 1.18209 0.88272 0.85776 0.91358 1.21557 1.01860 0.90309 1.06838 1.20058 0.93732 0.93290 0.98463 1.18238 0.86995 0.83702 0.76436 1.90795 1.13503 1.87311 1.48508 1.45865 1.10561 1.05520 1.74088 1.22769 0.98958 0.79841 0.97206 1.24326 0.98960 0.92676 0.98362 1.68803 1.34797 1.08455 1.03517 1.22505 0.93059 0.97194 0.99361 1.19642 0.87408 0.84544 0.85324 1.90539 1.16085 1.73198 1.65762 1.41868 1.10298 1.30316 1.37978 1.19757 0.96080 1.10067 1.16779 0.87880 1.25246 0.95156 0.98665 0.98921 1.69620 1.03392 1.37539 1.43959 0.85802 0.79224 0.79666 0.79680 1.19216 1.20798 1.20762 1.24410 1.02914 0.89516 0.96999 1.21979 0.93737 0.99949 1.07326 1.22372 0.99747 0.86377 0.92422 1.67051 1.06091 1.32361 1.19193 0.92678 0.90741 0.90687 0.92521 0.91161 0.92310 0.83609 0.76266 0.85048 0.88712 0.91037 0.89191 0.92200 0.77583 0.91984 0.91100 0.88697 0.84660 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.25 59.84 0.61 1.09 16 2 N -0.62 -4.76 3.39 -189.69 -0.64 -5.41 16 3 C 0.11 0.62 10.18 59.85 0.61 1.23 16 4 C 0.40 3.86 7.37 -155.07 -1.14 2.72 16 5 C -0.18 -1.81 8.84 -38.79 -0.34 -2.15 16 6 C -0.04 -0.44 5.90 -104.68 -0.62 -1.06 16 7 C 0.56 6.51 7.80 -12.18 -0.09 6.41 16 8 O -0.53 -7.97 16.03 5.35 0.09 -7.89 16 9 N -0.71 -6.79 5.35 -54.38 -0.29 -7.08 16 10 C 0.12 1.38 4.59 -67.72 -0.31 1.07 16 11 C -0.01 -0.15 7.45 -7.54 -0.06 -0.21 16 12 N -0.43 -7.03 5.82 -246.09 -1.43 -8.47 16 13 C 0.01 0.19 5.30 -4.97 -0.03 0.16 16 14 C 0.45 10.65 7.85 -10.98 -0.09 10.56 16 15 O -0.57 -16.02 16.01 5.55 0.09 -15.93 16 16 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 17 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 21 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.01 -0.12 7.53 -7.54 -0.06 -0.18 16 26 C -0.21 -1.54 9.61 -39.02 -0.37 -1.91 16 27 C 0.15 1.12 11.16 -17.62 -0.20 0.92 16 28 N -0.53 -5.10 9.54 -12.48 -0.12 -5.22 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 31 H 0.07 0.42 5.97 -51.93 -0.31 0.11 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.25 7.79 -51.93 -0.40 -0.16 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.15 1.43 5.71 -52.49 -0.30 1.13 16 36 H 0.40 2.67 6.89 -40.82 -0.28 2.38 16 37 H 0.13 1.77 7.45 -51.93 -0.39 1.38 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 40 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 41 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 42 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.07 0.92 7.42 -51.93 -0.39 0.54 16 45 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.14 0.63 6.53 -52.49 -0.34 0.28 16 47 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -36.35 395.46 -9.43 -45.78 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.40 Total: 9.77 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -2.32 Total: 10.64 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -1.82 Total: -64.50 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.35 -9.43 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732112436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.564 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds