Wall clock time and date at job start Wed Apr 1 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00043 * 2 1 4 4 C 1.39027 * 120.00269 * 179.97438 * 2 1 3 5 5 C 1.39120 * 119.64022 * 5.00497 * 4 2 1 6 6 C 1.39497 * 118.92545 * 179.97438 * 5 4 2 7 7 C 1.48160 * 120.88165 * 179.97438 * 6 5 4 8 8 O 1.21517 * 120.00299 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00446 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00149 * 179.97438 * 9 7 6 11 11 C 1.53514 * 114.16836 * 204.99631 * 10 9 7 12 12 N 1.47482 * 87.93039 * 220.13972 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47457 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47104 * 239.99973 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 C 1.40025 * 118.24014 * 0.25060 * 6 5 4 27 27 C 1.37946 * 119.17143 * 359.52394 * 26 6 5 28 28 N 1.31916 * 121.00215 * 0.48754 * 27 26 6 29 29 H 1.09001 * 109.47652 * 270.00413 * 1 2 3 30 30 H 1.09001 * 109.47363 * 30.00207 * 1 2 3 31 31 H 1.09003 * 109.46694 * 150.00316 * 1 2 3 32 32 H 1.08996 * 109.47177 * 239.99750 * 3 2 1 33 33 H 1.08997 * 109.47004 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47471 * 119.99619 * 3 2 1 35 35 H 1.07990 * 120.53887 * 359.97438 * 5 4 2 36 36 H 0.96996 * 119.99685 * 359.97438 * 9 7 6 37 37 H 1.08999 * 113.25779 * 337.94959 * 10 9 7 38 38 H 1.08994 * 113.47382 * 105.36815 * 11 10 9 39 39 H 1.09003 * 113.47448 * 334.90723 * 11 10 9 40 40 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 41 41 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 42 42 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 43 43 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 44 44 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 45 45 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 46 46 H 1.07995 * 120.41012 * 179.75311 * 26 6 5 47 47 H 1.07998 * 119.49661 * 180.25445 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4610 -2.4022 -0.1044 6 6 2.1736 -3.6014 -0.1029 7 6 1.4730 -4.9024 -0.2119 8 8 0.2617 -4.9344 -0.3037 9 7 2.1790 -6.0505 -0.2081 10 6 1.4862 -7.3369 -0.3153 11 6 2.2591 -8.5191 0.2861 12 7 1.8105 -9.3276 -0.8629 13 6 2.8961 -10.1833 -1.3602 14 6 2.3436 -11.1642 -2.3621 15 8 1.1620 -11.1513 -2.6354 16 7 3.1629 -12.0550 -2.9553 17 6 2.6604 -12.9470 -3.8672 18 1 1.6080 -12.9360 -4.1098 19 6 3.5047 -13.8657 -4.4783 20 7 4.7851 -13.8794 -4.1826 21 14 2.8203 -15.0806 -5.7213 22 1 1.3601 -14.8597 -5.8770 23 1 3.4937 -14.8824 -7.0298 24 1 3.0627 -16.4660 -5.2446 25 6 1.7260 -8.0764 -1.6390 26 6 3.5680 -3.5434 0.0103 27 6 4.1843 -2.3130 0.1054 28 7 3.4795 -1.1979 0.1008 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 2.8241 1.3265 -0.8899 33 1 1.4892 2.0972 -0.0005 34 1 2.8241 1.3266 0.8900 35 1 0.3842 -2.4039 -0.1857 36 1 3.1458 -6.0250 -0.1344 37 1 0.4397 -7.2884 -0.0144 38 1 1.8575 -8.8600 1.2402 39 1 3.3377 -8.3639 0.3132 40 1 3.3410 -10.7270 -0.5268 41 1 3.6562 -9.5651 -1.8379 42 1 4.1079 -12.0651 -2.7370 43 1 5.3746 -14.5206 -4.6096 44 1 2.6623 -7.8032 -2.1256 45 1 0.8727 -8.0423 -2.3163 46 1 4.1540 -4.4506 0.0191 47 1 5.2599 -2.2620 0.1887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732112436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:21 Heat of formation + Delta-G solvation = 2.504204 kcal Electronic energy + Delta-G solvation = -28876.123468 eV Core-core repulsion = 24673.844935 eV Total energy + Delta-G solvation = -4202.278533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96277 -41.30451 -40.12420 -39.41100 -37.45737 -35.96906 -35.30135 -33.64425 -33.26718 -31.57472 -31.00063 -29.18058 -27.46723 -26.97134 -26.43276 -25.81064 -24.33301 -23.18995 -21.58142 -21.31768 -20.95687 -19.90541 -19.15858 -18.14330 -17.79561 -17.35439 -17.06451 -16.70762 -16.59471 -16.51591 -16.42259 -16.15263 -15.86616 -15.63209 -15.48169 -15.07034 -14.87943 -14.82752 -14.35528 -14.21354 -13.77968 -13.69400 -13.51838 -13.48718 -13.14996 -13.08145 -13.01619 -12.75752 -12.54442 -12.43939 -12.34905 -12.12490 -11.85747 -11.50379 -11.45589 -11.11459 -10.80106 -10.49593 -10.39099 -10.18691 -10.00145 -9.78209 -8.57324 -8.46794 -5.95088 -0.27723 0.29910 1.36118 1.41412 1.55334 1.77828 1.79373 2.02325 2.06969 2.29572 2.86472 2.91234 3.19491 3.29396 3.46414 3.51571 3.59137 3.75710 3.91239 4.06592 4.08786 4.12725 4.27180 4.28042 4.34033 4.39981 4.42598 4.51376 4.54263 4.67883 4.70860 4.77057 4.79323 4.80137 4.85985 4.91681 4.96389 5.12477 5.29267 5.32881 5.41512 5.48795 5.87116 5.93853 6.07169 6.29219 6.39104 6.61824 7.03895 7.08774 7.14204 7.57658 8.15045 8.70750 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.001587 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.354909 B =17643.236150 C =17867.753117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.624 5.624 3 C 0.106 3.894 4 C 0.385 3.615 5 C -0.198 4.198 6 C -0.058 4.058 7 C 0.560 3.440 8 O -0.570 6.570 9 N -0.689 5.689 10 C 0.131 3.869 11 C 0.004 3.996 12 N -0.475 5.475 13 C 0.026 3.974 14 C 0.439 3.561 15 O -0.622 6.622 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.277 1.277 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.012 4.012 26 C -0.196 4.196 27 C 0.146 3.854 28 N -0.545 5.545 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.137 0.863 36 H 0.420 0.580 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.169 0.831 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 29.206 12.751 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.338 5.338 3 C -0.036 4.036 4 C 0.150 3.850 5 C -0.224 4.224 6 C -0.069 4.069 7 C 0.347 3.653 8 O -0.450 6.450 9 N -0.342 5.342 10 C 0.024 3.976 11 C -0.125 4.125 12 N -0.198 5.198 13 C -0.106 4.106 14 C 0.226 3.774 15 O -0.508 6.508 16 N -0.213 5.213 17 C -0.464 4.464 18 H 0.093 0.907 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.201 1.201 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.142 4.142 26 C -0.219 4.219 27 C -0.011 4.011 28 N -0.263 5.263 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.260 0.740 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.186 0.814 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.935 29.553 12.554 32.167 hybrid contribution 0.617 -1.260 -0.930 1.683 sum 2.552 28.293 11.624 30.694 Atomic orbital electron populations 1.21942 0.77035 1.04108 1.02413 1.46509 1.06134 1.02966 1.78142 1.21588 0.96942 0.83631 1.01447 1.18395 0.88576 0.86316 0.91695 1.21575 1.01694 0.91001 1.08163 1.20016 0.94919 0.92079 0.99839 1.18559 0.86543 0.84658 0.75492 1.90776 1.15569 1.87930 1.50678 1.45625 1.11341 1.04156 1.73063 1.22375 0.98498 0.81007 0.95683 1.24352 1.01035 0.90284 0.96811 1.68722 1.35610 1.09661 1.05762 1.22389 0.93525 0.96345 0.98334 1.20900 0.86707 0.84493 0.85273 1.90506 1.18425 1.74491 1.67396 1.41925 1.10723 1.30567 1.38038 1.19667 0.95308 1.12317 1.19083 0.90747 1.25977 0.95415 0.99605 1.00065 1.69665 1.03954 1.37995 1.44361 0.84904 0.78034 0.77794 0.77799 1.20147 1.19505 1.19490 1.24451 1.02478 0.89737 0.97576 1.22290 0.92575 1.01382 1.05677 1.23002 1.01202 0.85846 0.91027 1.67134 1.06057 1.33526 1.19623 0.92198 0.88551 0.91580 0.93193 0.88654 0.92902 0.84520 0.74049 0.87244 0.87664 0.87206 0.86588 0.89171 0.76868 0.91294 0.89153 0.92272 0.81357 0.78768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.25 127.77 1.31 2.21 16 2 N -0.62 -9.37 3.39 -754.05 -2.56 -11.93 16 3 C 0.11 1.15 10.18 127.77 1.30 2.45 16 4 C 0.38 7.35 7.37 133.07 0.98 8.33 16 5 C -0.20 -4.07 8.84 22.79 0.20 -3.86 16 6 C -0.06 -1.09 5.90 -19.90 -0.12 -1.21 16 7 C 0.56 12.75 7.80 86.88 0.68 13.43 16 8 O -0.57 -18.01 16.03 -3.77 -0.06 -18.07 16 9 N -0.69 -11.77 5.35 -444.25 -2.38 -14.14 16 10 C 0.13 2.92 4.59 45.45 0.21 3.13 16 11 C 0.00 0.08 7.45 83.58 0.62 0.70 16 12 N -0.47 -14.77 5.82 -932.48 -5.43 -20.20 16 13 C 0.03 0.83 5.30 85.56 0.45 1.29 16 14 C 0.44 21.10 7.85 87.66 0.69 21.79 16 15 O -0.62 -36.00 16.01 -3.07 -0.05 -36.05 16 16 N -0.57 -29.46 5.29 -306.98 -1.62 -31.08 16 17 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 18 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 20 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 21 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 C -0.01 -0.34 7.53 83.58 0.63 0.29 16 26 C -0.20 -2.38 9.61 22.63 0.22 -2.16 16 27 C 0.15 1.83 11.16 84.61 0.94 2.78 16 28 N -0.54 -9.79 9.54 -193.41 -1.85 -11.64 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.53 7.92 -2.39 -0.02 0.51 16 31 H 0.07 0.80 5.97 -2.39 -0.01 0.78 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.51 7.79 -2.39 -0.02 0.49 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.14 2.93 5.71 -2.92 -0.02 2.91 16 36 H 0.42 3.92 6.89 -92.71 -0.64 3.28 16 37 H 0.11 3.01 7.45 -2.39 -0.02 2.99 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 1.33 7.90 -2.39 -0.02 1.31 16 40 H 0.12 3.16 8.08 -2.39 -0.02 3.14 16 41 H 0.09 2.38 7.30 -2.39 -0.02 2.36 16 42 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 43 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.09 2.15 7.42 -2.39 -0.02 2.13 16 45 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.17 0.78 6.53 -2.91 -0.02 0.76 16 47 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -83.01 395.46 -2.57 -85.58 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.34 Total: 30.47 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: 9.40 Total: 30.63 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -13.55 Total: -137.89 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.11 Total: -54.12 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -83.01 -2.57 -85.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732112436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.085 kcal (2) G-P(sol) polarization free energy of solvation -83.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds