Wall clock time and date at job start Wed Apr 1 2020 04:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46993 * 2 1 4 4 C 1.46499 * 120.00053 * 277.33499 * 3 2 1 5 5 C 1.53005 * 109.47124 * 269.99672 * 4 3 2 6 6 N 1.46897 * 109.47330 * 179.97438 * 5 4 3 7 7 C 1.46896 * 111.00329 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47496 * 180.02562 * 7 6 5 9 9 O 1.21296 * 120.00047 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00234 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00020 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00114 * 359.97438 * 11 10 8 13 13 C 1.38948 * 120.00263 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00680 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99628 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47196 * 90.00166 * 15 13 11 17 17 H 1.48501 * 109.47381 * 210.00179 * 15 13 11 18 18 H 1.48505 * 109.47208 * 330.00709 * 15 13 11 19 19 C 1.34779 * 120.00199 * 97.33133 * 3 2 1 20 20 O 1.21278 * 120.00258 * 177.02579 * 19 3 2 21 21 C 1.50700 * 119.99396 * 357.30368 * 19 3 2 22 22 C 1.52996 * 112.85261 * 70.59744 * 21 19 3 23 23 C 1.53783 * 113.61333 * 299.39613 * 21 19 3 24 24 C 1.53958 * 87.01997 * 220.05132 * 23 21 19 25 25 F 1.39895 * 113.53803 * 270.81342 * 24 23 21 26 26 F 1.39895 * 113.73858 * 139.94728 * 24 23 21 27 27 C 1.53782 * 87.10835 * 25.36717 * 24 23 21 28 28 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47212 * 299.99921 * 1 2 3 30 30 H 1.08999 * 109.47160 * 59.99710 * 1 2 3 31 31 H 1.09005 * 109.47279 * 240.00825 * 2 1 3 32 32 H 1.08994 * 109.47295 * 119.99810 * 2 1 3 33 33 H 1.08996 * 109.47533 * 30.00003 * 4 3 2 34 34 H 1.09000 * 109.47313 * 150.00088 * 4 3 2 35 35 H 1.09000 * 109.47083 * 300.00041 * 5 4 3 36 36 H 1.09000 * 109.46686 * 60.00032 * 5 4 3 37 37 H 1.00902 * 111.00424 * 303.95822 * 6 5 4 38 38 H 1.09003 * 109.46979 * 300.00370 * 7 6 5 39 39 H 1.08996 * 109.47205 * 59.99852 * 7 6 5 40 40 H 0.96994 * 120.00020 * 359.97438 * 10 8 7 41 41 H 0.96993 * 120.00078 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.46704 * 69.26955 * 22 21 19 43 43 H 1.08996 * 109.47195 * 189.26838 * 22 21 19 44 44 H 1.09000 * 109.47331 * 309.27251 * 22 21 19 45 45 H 1.08994 * 113.62006 * 334.57410 * 23 21 19 46 46 H 1.09005 * 113.60939 * 105.47607 * 23 21 19 47 47 H 1.09005 * 113.61300 * 220.08926 * 27 24 23 48 48 H 1.08998 * 113.61451 * 89.19063 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1098 2.1258 -1.2583 5 6 3.4905 1.9083 -1.8805 6 7 3.5821 2.6544 -3.1426 7 6 4.8971 2.4682 -3.7701 8 6 4.9536 3.2471 -5.0589 9 8 3.9930 3.8942 -5.4191 10 7 6.0715 3.2248 -5.8115 11 6 6.1231 3.9338 -6.9837 12 1 5.2677 4.5100 -7.3043 13 6 7.2754 3.9104 -7.7598 14 7 7.3247 4.5896 -8.8836 15 14 8.7545 2.9132 -7.2055 16 1 8.6564 1.5362 -7.7527 17 1 9.9984 3.5554 -7.7012 18 1 8.7847 2.8552 -5.7219 19 6 2.3834 1.9670 1.1577 20 8 2.8382 3.0912 1.1514 21 6 2.2321 1.2225 2.4592 22 6 3.2267 0.0688 2.6028 23 6 0.7804 0.8277 2.7778 24 6 1.0839 1.2036 4.2397 25 9 1.5890 0.1410 4.9965 26 9 0.0354 1.8749 4.8778 27 6 2.1722 2.1413 3.6909 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3415 1.7727 -1.9462 34 1 1.9624 3.1881 -1.0635 35 1 4.2588 2.2615 -1.1927 36 1 3.6379 0.8460 -2.0754 37 1 2.8401 2.3904 -3.7734 38 1 5.6754 2.8253 -3.0957 39 1 5.0540 1.4097 -3.9777 40 1 6.8399 2.7076 -5.5233 41 1 8.1292 4.5735 -9.4251 42 1 4.2330 0.4698 2.7243 43 1 2.9659 -0.5291 3.4760 44 1 3.1898 -0.5560 1.7104 45 1 0.0389 1.4723 2.3061 46 1 0.5745 -0.2328 2.6325 47 1 3.0883 2.1398 4.2816 48 1 1.8119 3.1458 3.4693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732807925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:23 Heat of formation + Delta-G solvation = -130.482910 kcal Electronic energy + Delta-G solvation = -30954.732032 eV Core-core repulsion = 26295.997559 eV Total energy + Delta-G solvation = -4658.734473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.34037 -47.64970 -41.21163 -38.54528 -37.97866 -36.76419 -35.38576 -33.89945 -31.71878 -31.46593 -30.35519 -29.08106 -26.99479 -26.40169 -24.99716 -23.97959 -23.27790 -22.38685 -20.95459 -19.41938 -19.06460 -18.37343 -18.25969 -17.45594 -17.23883 -16.41655 -16.38965 -16.17694 -15.66097 -15.42816 -14.92728 -14.89272 -14.63493 -14.40489 -14.18504 -14.15589 -14.03825 -13.85373 -13.76740 -13.46265 -13.18621 -13.04891 -13.01364 -12.91106 -12.53274 -12.45277 -12.28784 -12.07449 -11.92618 -11.84515 -11.68911 -11.65547 -11.24888 -11.24230 -11.08451 -10.90836 -10.59778 -10.02846 -9.97578 -9.57550 -9.11035 -8.59112 -8.21255 -8.15802 -6.31123 -3.82567 2.18367 2.46797 2.89593 3.02853 3.06154 3.14779 3.18825 3.55465 3.61559 3.73619 3.76984 4.09089 4.11248 4.20108 4.39431 4.47520 4.67167 4.71968 4.76797 4.80524 4.86269 4.91826 4.96893 5.04395 5.07592 5.18633 5.21781 5.22978 5.28066 5.29184 5.36787 5.43347 5.57487 5.61493 5.69483 5.75452 5.80029 5.85752 5.94637 6.17477 6.97343 7.03677 7.53283 7.58145 7.78841 8.14307 8.59630 8.94810 9.42243 9.82344 10.81978 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.001793 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.980782 B =15613.886645 C =15900.198020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 N -0.605 5.605 4 C 0.117 3.883 5 C 0.048 3.952 6 N -0.665 5.665 7 C 0.051 3.949 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.533 3.467 20 O -0.521 6.521 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.154 4.154 24 C 0.255 3.745 25 F -0.176 7.176 26 F -0.187 7.187 27 C -0.138 4.138 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.350 0.650 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 -16.049 27.189 33.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.034 4.034 3 N -0.338 5.338 4 C -0.006 4.006 5 C -0.083 4.083 6 N -0.298 5.298 7 C -0.082 4.082 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.195 1.195 19 C 0.319 3.681 20 O -0.396 6.396 21 C -0.104 4.104 22 C -0.201 4.201 23 C -0.192 4.192 24 C 0.219 3.781 25 F -0.157 7.157 26 F -0.168 7.168 27 C -0.176 4.176 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.169 0.831 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.138 0.862 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.031 -14.345 27.065 32.910 hybrid contribution 1.193 -1.810 0.038 2.169 sum -10.837 -16.156 27.103 33.363 Atomic orbital electron populations 1.22447 0.95584 1.02757 1.03305 1.21950 0.94939 0.82468 1.04074 1.47896 1.64758 1.14319 1.06858 1.21430 0.96816 0.98561 0.83795 1.22260 0.98084 0.95262 0.92664 1.59917 1.04260 1.59801 1.05825 1.21684 0.92541 0.98062 0.95921 1.19689 0.84437 0.86404 0.85905 1.90566 1.36147 1.45266 1.72601 1.42203 1.13483 1.45524 1.21788 1.19435 1.02735 1.25656 0.95523 0.86257 1.25044 0.97828 0.97559 0.95778 1.69619 1.29061 1.40639 1.12791 0.86669 0.83154 0.80739 0.78813 1.19680 1.20143 1.19467 1.19973 0.77517 0.86252 0.84333 1.90774 1.43402 1.18838 1.86587 1.21819 0.96813 0.97921 0.93870 1.21932 0.98443 0.95869 1.03833 1.24496 0.97230 1.05308 0.92131 1.22011 0.85784 0.83970 0.86373 1.93000 1.87026 1.57205 1.78442 1.93030 1.59108 1.79988 1.84644 1.24048 0.99285 0.99671 0.94608 0.91206 0.91670 0.91866 0.90136 0.89051 0.90297 0.88552 0.90686 0.95617 0.83082 0.89443 0.93793 0.79695 0.91611 0.90653 0.89981 0.90536 0.86217 0.87622 0.87953 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 9.65 37.16 0.36 -0.39 16 2 C 0.09 0.43 5.41 -4.04 -0.02 0.41 16 3 N -0.61 -4.90 2.48 -173.68 -0.43 -5.33 16 4 C 0.12 1.19 5.66 -4.04 -0.02 1.16 16 5 C 0.05 0.57 6.01 -3.82 -0.02 0.54 16 6 N -0.67 -10.31 6.13 -115.06 -0.70 -11.01 16 7 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 8 C 0.45 10.31 7.82 -10.99 -0.09 10.22 16 9 O -0.56 -15.26 15.78 5.54 0.09 -15.17 16 10 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 11 C -0.30 -8.68 10.16 -14.94 -0.15 -8.83 16 12 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 15 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 19 C 0.53 5.13 6.64 -10.98 -0.07 5.06 16 20 O -0.52 -7.30 15.89 5.56 0.09 -7.21 16 21 C -0.10 -0.65 0.70 -154.85 -0.11 -0.76 16 22 C -0.14 -0.72 8.58 37.16 0.32 -0.40 16 23 C -0.15 -0.77 4.19 -25.82 -0.11 -0.88 16 24 C 0.26 1.73 3.27 -25.82 -0.08 1.65 16 25 F -0.18 -1.30 15.52 2.25 0.03 -1.26 16 26 F -0.19 -1.61 17.41 2.25 0.04 -1.57 16 27 C -0.14 -0.96 6.67 -25.92 -0.17 -1.13 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.26 4.74 -51.93 -0.25 0.01 16 30 H 0.06 0.32 8.02 -51.93 -0.42 -0.10 16 31 H 0.08 0.37 8.12 -51.93 -0.42 -0.06 16 32 H 0.09 0.32 3.47 -51.93 -0.18 0.14 16 33 H 0.08 0.67 7.95 -51.93 -0.41 0.26 16 34 H 0.10 1.23 7.46 -51.93 -0.39 0.84 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.35 5.36 8.43 -39.29 -0.33 5.03 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.36 6.20 -51.93 -0.32 0.04 16 44 H 0.08 0.30 5.62 -51.93 -0.29 0.01 16 45 H 0.12 0.59 6.74 -51.93 -0.35 0.24 16 46 H 0.11 0.33 7.22 -51.93 -0.38 -0.04 16 47 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 48 H 0.12 0.95 7.82 -51.93 -0.41 0.55 16 LS Contribution 387.35 15.07 5.84 5.84 Total: -1.00 -35.23 387.35 -6.23 -41.46 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.89 Total: 10.36 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.30 Total: 8.50 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.42 Total: -55.65 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.18 Total: -22.38 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.07 Total: -2.83 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.23 -6.23 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732807925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.021 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds