Wall clock time and date at job start Wed Apr 1 2020 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46993 * 2 1 4 4 C 1.46499 * 120.00053 * 277.33499 * 3 2 1 5 5 C 1.53005 * 109.47124 * 269.99672 * 4 3 2 6 6 N 1.46897 * 109.47330 * 179.97438 * 5 4 3 7 7 C 1.46896 * 111.00329 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47496 * 180.02562 * 7 6 5 9 9 O 1.21296 * 120.00047 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00234 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00020 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00114 * 359.97438 * 11 10 8 13 13 C 1.38948 * 120.00263 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00680 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99628 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47196 * 90.00166 * 15 13 11 17 17 H 1.48501 * 109.47381 * 210.00179 * 15 13 11 18 18 H 1.48505 * 109.47208 * 330.00709 * 15 13 11 19 19 C 1.34779 * 120.00199 * 97.33133 * 3 2 1 20 20 O 1.21278 * 120.00258 * 177.02579 * 19 3 2 21 21 C 1.50700 * 119.99396 * 357.30368 * 19 3 2 22 22 C 1.52996 * 112.85261 * 70.59744 * 21 19 3 23 23 C 1.53783 * 113.61333 * 299.39613 * 21 19 3 24 24 C 1.53958 * 87.01997 * 220.05132 * 23 21 19 25 25 F 1.39895 * 113.53803 * 270.81342 * 24 23 21 26 26 F 1.39895 * 113.73858 * 139.94728 * 24 23 21 27 27 C 1.53782 * 87.10835 * 25.36717 * 24 23 21 28 28 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47212 * 299.99921 * 1 2 3 30 30 H 1.08999 * 109.47160 * 59.99710 * 1 2 3 31 31 H 1.09005 * 109.47279 * 240.00825 * 2 1 3 32 32 H 1.08994 * 109.47295 * 119.99810 * 2 1 3 33 33 H 1.08996 * 109.47533 * 30.00003 * 4 3 2 34 34 H 1.09000 * 109.47313 * 150.00088 * 4 3 2 35 35 H 1.09000 * 109.47083 * 300.00041 * 5 4 3 36 36 H 1.09000 * 109.46686 * 60.00032 * 5 4 3 37 37 H 1.00902 * 111.00424 * 303.95822 * 6 5 4 38 38 H 1.09003 * 109.46979 * 300.00370 * 7 6 5 39 39 H 1.08996 * 109.47205 * 59.99852 * 7 6 5 40 40 H 0.96994 * 120.00020 * 359.97438 * 10 8 7 41 41 H 0.96993 * 120.00078 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.46704 * 69.26955 * 22 21 19 43 43 H 1.08996 * 109.47195 * 189.26838 * 22 21 19 44 44 H 1.09000 * 109.47331 * 309.27251 * 22 21 19 45 45 H 1.08994 * 113.62006 * 334.57410 * 23 21 19 46 46 H 1.09005 * 113.60939 * 105.47607 * 23 21 19 47 47 H 1.09005 * 113.61300 * 220.08926 * 27 24 23 48 48 H 1.08998 * 113.61451 * 89.19063 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1098 2.1258 -1.2583 5 6 3.4905 1.9083 -1.8805 6 7 3.5821 2.6544 -3.1426 7 6 4.8971 2.4682 -3.7701 8 6 4.9536 3.2471 -5.0589 9 8 3.9930 3.8942 -5.4191 10 7 6.0715 3.2248 -5.8115 11 6 6.1231 3.9338 -6.9837 12 1 5.2677 4.5100 -7.3043 13 6 7.2754 3.9104 -7.7598 14 7 7.3247 4.5896 -8.8836 15 14 8.7545 2.9132 -7.2055 16 1 8.6564 1.5362 -7.7527 17 1 9.9984 3.5554 -7.7012 18 1 8.7847 2.8552 -5.7219 19 6 2.3834 1.9670 1.1577 20 8 2.8382 3.0912 1.1514 21 6 2.2321 1.2225 2.4592 22 6 3.2267 0.0688 2.6028 23 6 0.7804 0.8277 2.7778 24 6 1.0839 1.2036 4.2397 25 9 1.5890 0.1410 4.9965 26 9 0.0354 1.8749 4.8778 27 6 2.1722 2.1413 3.6909 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3415 1.7727 -1.9462 34 1 1.9624 3.1881 -1.0635 35 1 4.2588 2.2615 -1.1927 36 1 3.6379 0.8460 -2.0754 37 1 2.8401 2.3904 -3.7734 38 1 5.6754 2.8253 -3.0957 39 1 5.0540 1.4097 -3.9777 40 1 6.8399 2.7076 -5.5233 41 1 8.1292 4.5735 -9.4251 42 1 4.2330 0.4698 2.7243 43 1 2.9659 -0.5291 3.4760 44 1 3.1898 -0.5560 1.7104 45 1 0.0389 1.4723 2.3061 46 1 0.5745 -0.2328 2.6325 47 1 3.0883 2.1398 4.2816 48 1 1.8119 3.1458 3.4693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732807925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:20 Heat of formation + Delta-G solvation = -157.139840 kcal Electronic energy + Delta-G solvation = -30955.887963 eV Core-core repulsion = 26295.997559 eV Total energy + Delta-G solvation = -4659.890405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.90736 -48.23437 -41.85379 -40.32857 -38.67052 -37.62458 -36.52603 -35.83979 -33.76741 -32.20870 -30.88872 -29.95004 -27.91599 -27.38456 -25.95192 -25.15712 -23.96332 -23.27571 -21.63590 -21.28098 -20.30758 -19.61136 -18.88386 -18.01001 -17.89947 -17.82289 -17.23825 -17.01763 -16.87500 -16.64336 -16.21766 -15.69936 -15.51905 -15.31064 -15.14770 -14.94266 -14.82307 -14.64231 -14.62960 -14.57449 -14.37765 -14.18915 -13.84520 -13.68486 -13.46983 -13.42654 -13.33809 -13.03185 -12.96341 -12.74428 -12.49498 -12.42867 -12.33989 -12.14667 -12.03743 -11.98835 -11.63651 -11.52443 -11.38451 -10.76224 -10.49147 -10.26439 -9.78667 -9.37467 -8.42227 -6.03440 1.30019 1.34684 1.44196 1.47479 1.79326 1.93092 2.22331 2.38002 2.66763 2.75714 3.04905 3.10775 3.13908 3.24963 3.46047 3.62160 3.99229 3.99784 4.03817 4.08797 4.14094 4.28858 4.32793 4.38057 4.41140 4.44908 4.51426 4.54905 4.57881 4.61296 4.73974 4.85270 4.86207 4.90254 4.94024 4.99888 5.01064 5.25519 5.43256 5.48300 5.53238 5.86776 5.99183 6.31302 6.38989 6.58164 6.86365 7.07936 7.37753 7.93958 8.75336 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.001793 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.980782 B =15613.886645 C =15900.198020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 N -0.598 5.598 4 C 0.121 3.879 5 C 0.058 3.942 6 N -0.688 5.688 7 C 0.066 3.934 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.590 5.590 11 C -0.330 4.330 12 H 0.055 0.945 13 C -0.016 4.016 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.233 1.233 19 C 0.529 3.471 20 O -0.575 6.575 21 C -0.094 4.094 22 C -0.141 4.141 23 C -0.141 4.141 24 C 0.253 3.747 25 F -0.177 7.177 26 F -0.199 7.199 27 C -0.146 4.146 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.349 0.651 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.134 0.866 47 H 0.106 0.894 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -20.153 29.257 37.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.038 4.038 3 N -0.330 5.330 4 C -0.003 4.003 5 C -0.072 4.072 6 N -0.322 5.322 7 C -0.067 4.067 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.232 5.232 11 C -0.459 4.459 12 H 0.073 0.927 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.157 1.157 19 C 0.317 3.683 20 O -0.454 6.454 21 C -0.098 4.098 22 C -0.198 4.198 23 C -0.178 4.178 24 C 0.217 3.783 25 F -0.158 7.158 26 F -0.180 7.180 27 C -0.184 4.184 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.168 0.832 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.139 0.861 46 H 0.152 0.848 47 H 0.124 0.876 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.026 -18.502 29.162 36.254 hybrid contribution 0.737 -0.450 -0.621 1.064 sum -10.289 -18.951 28.541 35.772 Atomic orbital electron populations 1.22446 0.94822 1.03920 1.02796 1.22254 0.95558 0.80402 1.05628 1.47968 1.63930 1.15442 1.05636 1.21245 0.96688 0.97287 0.85031 1.22199 0.98351 0.96187 0.90453 1.59862 1.03696 1.61655 1.06942 1.21581 0.93822 0.98918 0.92369 1.20951 0.83008 0.85295 0.87178 1.90545 1.37890 1.47211 1.74174 1.42023 1.14804 1.45632 1.20702 1.19011 1.01696 1.27018 0.98173 0.92661 1.26141 1.01559 0.98549 0.95223 1.69802 1.30626 1.42471 1.14492 0.85352 0.76836 0.78796 0.80449 1.17813 1.20047 1.15660 1.20526 0.76486 0.85723 0.85552 1.90752 1.45958 1.21259 1.87402 1.21799 0.98410 0.97950 0.91606 1.21965 0.97462 0.95272 1.05103 1.24506 0.96081 1.07052 0.90199 1.22103 0.85359 0.83824 0.87014 1.92995 1.87045 1.57110 1.78647 1.93005 1.59654 1.80377 1.84996 1.24076 0.99706 0.99335 0.95319 0.89160 0.91608 0.93055 0.88933 0.87154 0.88432 0.91847 0.92211 0.92748 0.83156 0.87666 0.89886 0.77448 0.91104 0.91378 0.88892 0.88910 0.86128 0.84780 0.87557 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 9.65 71.98 0.69 -0.20 16 2 C 0.08 0.51 5.41 86.38 0.47 0.98 16 3 N -0.60 -8.58 2.48 -821.81 -2.04 -10.62 16 4 C 0.12 2.33 5.66 86.38 0.49 2.82 16 5 C 0.06 1.25 6.01 86.31 0.52 1.76 16 6 N -0.69 -20.40 6.13 -517.95 -3.17 -23.57 16 7 C 0.07 2.03 6.17 85.56 0.53 2.55 16 8 C 0.45 20.46 7.82 87.65 0.69 21.14 16 9 O -0.61 -34.44 15.78 -3.08 -0.05 -34.49 16 10 N -0.59 -28.06 5.09 -306.98 -1.56 -29.63 16 11 C -0.33 -19.49 10.16 84.04 0.85 -18.64 16 12 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 13 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 14 N -0.93 -56.53 13.96 21.66 0.30 -56.22 16 15 Si 0.97 38.81 27.74 68.60 1.90 40.71 16 16 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 17 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 19 C 0.53 9.75 6.64 87.66 0.58 10.33 16 20 O -0.57 -16.59 15.89 -3.02 -0.05 -16.64 16 21 C -0.09 -1.07 0.70 -52.40 -0.04 -1.10 16 22 C -0.14 -1.01 8.58 71.98 0.62 -0.39 16 23 C -0.14 -1.07 4.19 31.18 0.13 -0.94 16 24 C 0.25 3.08 3.27 31.18 0.10 3.18 16 25 F -0.18 -2.25 15.52 44.97 0.70 -1.55 16 26 F -0.20 -3.29 17.41 44.97 0.78 -2.51 16 27 C -0.15 -1.98 6.67 31.12 0.21 -1.77 16 28 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.07 0.33 4.74 -2.39 -0.01 0.31 16 30 H 0.05 0.40 8.02 -2.39 -0.02 0.38 16 31 H 0.09 0.42 8.12 -2.38 -0.02 0.40 16 32 H 0.11 0.28 3.47 -2.39 -0.01 0.27 16 33 H 0.10 1.50 7.95 -2.39 -0.02 1.49 16 34 H 0.06 1.67 7.46 -2.39 -0.02 1.65 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.35 10.39 8.43 -89.69 -0.76 9.63 16 38 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.39 15.29 5.76 -92.71 -0.53 14.76 16 41 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 0.50 6.20 -2.39 -0.01 0.49 16 44 H 0.09 0.35 5.62 -2.39 -0.01 0.34 16 45 H 0.12 0.96 6.74 -2.39 -0.02 0.94 16 46 H 0.13 0.28 7.22 -2.38 -0.02 0.26 16 47 H 0.11 1.30 8.10 -2.38 -0.02 1.28 16 48 H 0.11 1.79 7.82 -2.39 -0.02 1.77 16 Total: -1.00 -84.01 387.35 2.79 -81.21 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.33 Total: 33.99 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 6.31 Total: 19.30 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.47 Total: -120.04 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.48 Total: -4.06 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.71 kcal Total: -84.01 2.79 -81.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732807925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.925 kcal (2) G-P(sol) polarization free energy of solvation -84.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds