Wall clock time and date at job start Wed Apr 1 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47254 * 2 1 4 4 C 1.34778 * 120.00171 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99633 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99680 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46762 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47290 * 180.02562 * 7 6 4 9 9 O 1.21286 * 119.99891 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00341 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99947 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47128 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.49833 * 304.94077 * 12 11 10 14 14 C 1.53196 * 109.49216 * 65.00099 * 12 11 10 15 15 N 1.46927 * 108.77634 * 174.58549 * 14 12 11 16 16 C 1.36928 * 120.63088 * 126.36721 * 15 14 12 17 17 H 1.08007 * 120.00500 * 332.14013 * 16 15 14 18 18 C 1.38814 * 119.99963 * 152.13855 * 16 15 14 19 19 N 1.31619 * 119.99967 * 343.00388 * 18 16 15 20 20 Si 1.86804 * 119.99920 * 162.99959 * 18 16 15 21 21 H 1.48499 * 109.47455 * 266.23556 * 20 18 16 22 22 H 1.48503 * 109.47084 * 26.23946 * 20 18 16 23 23 H 1.48500 * 109.47032 * 146.23813 * 20 18 16 24 24 C 1.46923 * 118.73739 * 306.64523 * 15 14 12 25 25 C 1.52765 * 109.00780 * 53.30755 * 24 15 14 26 26 C 1.53035 * 109.49818 * 184.83805 * 12 11 10 27 27 F 1.39905 * 109.46279 * 298.70689 * 26 12 11 28 28 F 1.39893 * 109.46378 * 58.68142 * 26 12 11 29 29 H 1.08998 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46945 * 300.00156 * 1 2 3 31 31 H 1.08994 * 109.46644 * 60.00215 * 1 2 3 32 32 H 1.09000 * 109.47357 * 240.00283 * 2 1 3 33 33 H 1.08998 * 109.47135 * 119.99731 * 2 1 3 34 34 H 0.97002 * 119.99653 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.47149 * 60.00703 * 6 4 3 36 36 H 1.08998 * 109.47150 * 299.99975 * 6 4 3 37 37 H 1.09001 * 109.47368 * 59.99588 * 7 6 4 38 38 H 1.09000 * 109.47146 * 300.00366 * 7 6 4 39 39 H 0.96999 * 119.99427 * 359.97438 * 10 8 7 40 40 H 1.09007 * 109.47206 * 59.99590 * 11 10 8 41 41 H 1.09000 * 109.47469 * 299.99790 * 11 10 8 42 42 H 1.09006 * 109.58473 * 54.79878 * 14 12 11 43 43 H 1.09000 * 109.58860 * 294.37183 * 14 12 11 44 44 H 0.97001 * 119.99475 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.58551 * 173.13817 * 24 15 14 46 46 H 1.09001 * 109.58984 * 293.56422 * 24 15 14 47 47 H 1.09007 * 109.56262 * 185.55083 * 25 24 15 48 48 H 1.08999 * 109.36168 * 65.49967 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0484 -0.0001 7 6 5.3758 3.0484 0.0001 8 6 5.8781 4.4691 0.0001 9 8 5.0900 5.3910 -0.0004 10 7 7.2032 4.7154 -0.0003 11 6 7.6915 6.0966 -0.0008 12 6 9.2215 6.0967 -0.0006 13 1 9.5852 5.5086 0.8420 14 6 9.7329 5.4858 -1.3091 15 7 11.1962 5.6117 -1.3496 16 6 11.9852 4.5137 -1.5660 17 1 11.6395 3.5337 -1.2714 18 6 13.2294 4.6600 -2.1640 19 7 13.5187 5.7640 -2.8195 20 14 14.4930 3.2900 -2.0381 21 1 15.3853 3.5445 -0.8787 22 1 13.7979 1.9910 -1.8520 23 1 15.3004 3.2454 -3.2836 24 6 11.7971 6.9371 -1.1474 25 6 11.2623 7.5326 0.1538 26 6 9.7322 7.5342 0.1206 27 9 9.2907 8.2799 -0.9778 28 9 9.2413 8.1055 1.2994 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 0.0004 35 1 3.4820 3.5626 0.8895 36 1 3.4828 3.5616 -0.8905 37 1 5.7392 2.5341 -0.8896 38 1 5.7390 2.5349 0.8903 39 1 7.8335 3.9781 -0.0003 40 1 7.3283 6.6108 0.8891 41 1 7.3280 6.6102 -0.8908 42 1 9.2969 6.0170 -2.1552 43 1 9.4554 4.4327 -1.3537 44 1 14.3883 5.8663 -3.2371 45 1 12.8811 6.8413 -1.0853 46 1 11.5329 7.5891 -1.9801 47 1 11.6249 8.5547 0.2636 48 1 11.6073 6.9314 0.9950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733474006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:57 Heat of formation + Delta-G solvation = -171.906439 kcal Electronic energy + Delta-G solvation = -30977.185490 eV Core-core repulsion = 26316.654758 eV Total energy + Delta-G solvation = -4660.530732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.53747 -46.48857 -40.24447 -39.45294 -37.40064 -35.68909 -35.02948 -33.16417 -32.66160 -31.10944 -30.65221 -30.19390 -26.67579 -25.28997 -24.77645 -23.01964 -22.41041 -21.45211 -20.82554 -20.22747 -19.52997 -17.92143 -17.15459 -16.81389 -16.53966 -16.42323 -16.24090 -16.09079 -15.63017 -15.43701 -15.21940 -15.03565 -14.61761 -14.12671 -14.06295 -13.61103 -13.39231 -13.28681 -13.24324 -13.08977 -12.86324 -12.80223 -12.64840 -12.30397 -12.26533 -12.15670 -11.92504 -11.69713 -11.60235 -11.56501 -11.37551 -11.23783 -10.85199 -10.63517 -10.51203 -10.14106 -10.08445 -9.97179 -9.90774 -9.63513 -9.44590 -9.01940 -8.62124 -6.90862 -5.94362 -3.39282 2.36857 2.63846 2.74116 3.24913 3.30188 3.37953 3.39098 4.19790 4.34458 4.36868 4.52633 4.60687 4.63653 4.66808 4.75660 4.85503 4.89192 4.89639 4.95818 5.19943 5.27016 5.35265 5.39511 5.41093 5.45311 5.53878 5.58897 5.60742 5.64022 5.71044 5.91072 5.99800 6.07075 6.14816 6.25758 6.32224 6.41758 6.42991 6.68374 7.09316 7.12107 7.43753 7.49750 7.65221 7.90842 8.20788 8.26054 9.02260 9.64620 10.19858 11.14790 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.002300 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.972859 B =12172.318897 C =14177.268186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.735 5.735 4 C 0.513 3.487 5 O -0.540 6.540 6 C -0.124 4.124 7 C -0.126 4.126 8 C 0.513 3.487 9 O -0.548 6.548 10 N -0.722 5.722 11 C 0.125 3.875 12 C -0.156 4.156 13 H 0.102 0.898 14 C 0.153 3.847 15 N -0.590 5.590 16 C -0.261 4.261 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.277 1.277 23 H -0.290 1.290 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.199 7.199 28 F -0.214 7.214 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.406 0.594 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.066 0.934 44 H 0.257 0.743 45 H 0.100 0.900 46 H 0.032 0.968 47 H 0.076 0.924 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.364 -5.252 7.207 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.388 5.388 4 C 0.299 3.701 5 O -0.417 6.417 6 C -0.164 4.164 7 C -0.166 4.166 8 C 0.300 3.700 9 O -0.426 6.426 10 N -0.373 5.373 11 C 0.001 3.999 12 C -0.177 4.177 13 H 0.120 0.880 14 C 0.026 3.974 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.217 1.217 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.264 3.736 27 F -0.180 7.180 28 F -0.195 7.195 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.241 0.759 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.118 0.882 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.203 -5.216 7.082 22.035 hybrid contribution 0.603 -0.433 0.084 0.747 sum -19.600 -5.648 7.166 21.620 Atomic orbital electron populations 1.22008 0.94424 1.03283 1.02587 1.21303 0.94243 0.83091 1.02474 1.46084 1.07336 1.09002 1.76398 1.20796 0.82108 0.91786 0.75367 1.90726 1.55232 1.46657 1.49059 1.21361 0.95920 0.93148 1.05984 1.21365 0.95162 0.93930 1.06169 1.20601 0.82253 0.91372 0.75777 1.90697 1.55302 1.46606 1.50030 1.45962 1.07153 1.09177 1.75051 1.21318 0.92692 0.82958 1.02960 1.22976 0.94610 0.95014 1.05120 0.87987 1.20921 0.86496 0.98701 0.91325 1.44073 0.98957 1.05337 1.82806 1.19173 0.98331 0.87517 1.34019 0.91242 1.25097 0.99944 0.97492 0.96788 1.70025 1.22110 1.27148 1.34921 0.86231 0.81508 0.81539 0.77197 1.21328 1.20254 1.21674 1.20749 1.00075 0.85159 0.89648 1.23205 0.90254 1.03164 1.05245 1.21027 0.94740 0.86995 0.70877 1.92967 1.91224 1.79044 1.54792 1.92953 1.90046 1.87070 1.49397 0.90775 0.91935 0.91905 0.91461 0.91506 0.76378 0.88033 0.87943 0.87843 0.88041 0.75924 0.91080 0.90690 0.94943 0.91534 0.93341 0.88164 0.95003 0.90515 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.03 37.16 0.37 -0.23 16 2 C 0.11 0.72 6.39 -4.04 -0.03 0.69 16 3 N -0.73 -5.03 5.56 -60.29 -0.33 -5.36 16 4 C 0.51 4.97 7.83 -10.98 -0.09 4.89 16 5 O -0.54 -7.31 15.98 5.56 0.09 -7.22 16 6 C -0.12 -1.08 4.99 -27.88 -0.14 -1.22 16 7 C -0.13 -1.25 4.99 -27.88 -0.14 -1.39 16 8 C 0.51 6.56 7.83 -10.99 -0.09 6.48 16 9 O -0.55 -8.72 15.98 5.55 0.09 -8.63 16 10 N -0.72 -9.14 5.33 -60.29 -0.32 -9.46 16 11 C 0.12 1.85 4.83 -4.04 -0.02 1.83 16 12 C -0.16 -2.52 2.03 -90.50 -0.18 -2.70 16 13 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 14 C 0.15 2.91 5.40 -3.71 -0.02 2.89 16 15 N -0.59 -13.61 3.00 -172.57 -0.52 -14.12 16 16 C -0.26 -6.62 9.58 -15.06 -0.14 -6.77 16 17 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 18 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 19 N -0.90 -24.80 11.20 55.49 0.62 -24.18 16 20 Si 0.91 20.62 29.59 -169.99 -5.03 15.59 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.17 3.80 5.08 -3.93 -0.02 3.78 16 25 C -0.18 -3.26 5.60 -26.83 -0.15 -3.41 16 26 C 0.30 5.28 1.63 -26.69 -0.04 5.24 16 27 F -0.20 -3.80 15.73 2.25 0.04 -3.77 16 28 F -0.21 -3.67 16.41 2.25 0.04 -3.63 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.40 1.70 8.47 -40.82 -0.35 1.35 16 35 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 38 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.41 4.47 7.70 -40.82 -0.31 4.15 16 40 H 0.07 1.09 7.63 -51.92 -0.40 0.69 16 41 H 0.07 1.21 7.97 -51.93 -0.41 0.80 16 42 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 43 H 0.07 1.17 7.13 -51.93 -0.37 0.80 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 45 H 0.10 2.49 6.06 -51.93 -0.31 2.17 16 46 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 47 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 48 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -32.28 395.75 -7.73 -40.01 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.59 Total: 4.67 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.77 Total: 10.16 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.55 Total: -53.13 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.18 Total: -15.86 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.07 Total: -7.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.28 -7.73 -40.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733474006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.896 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds