Wall clock time and date at job start Wed Apr 1 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47254 * 2 1 4 4 C 1.34778 * 120.00171 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99633 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99680 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46762 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47290 * 180.02562 * 7 6 4 9 9 O 1.21286 * 119.99891 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00341 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99947 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47128 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.49833 * 304.94077 * 12 11 10 14 14 C 1.53196 * 109.49216 * 65.00099 * 12 11 10 15 15 N 1.46927 * 108.77634 * 174.58549 * 14 12 11 16 16 C 1.36928 * 120.63088 * 126.36721 * 15 14 12 17 17 H 1.08007 * 120.00500 * 332.14013 * 16 15 14 18 18 C 1.38814 * 119.99963 * 152.13855 * 16 15 14 19 19 N 1.31619 * 119.99967 * 343.00388 * 18 16 15 20 20 Si 1.86804 * 119.99920 * 162.99959 * 18 16 15 21 21 H 1.48499 * 109.47455 * 266.23556 * 20 18 16 22 22 H 1.48503 * 109.47084 * 26.23946 * 20 18 16 23 23 H 1.48500 * 109.47032 * 146.23813 * 20 18 16 24 24 C 1.46923 * 118.73739 * 306.64523 * 15 14 12 25 25 C 1.52765 * 109.00780 * 53.30755 * 24 15 14 26 26 C 1.53035 * 109.49818 * 184.83805 * 12 11 10 27 27 F 1.39905 * 109.46279 * 298.70689 * 26 12 11 28 28 F 1.39893 * 109.46378 * 58.68142 * 26 12 11 29 29 H 1.08998 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46945 * 300.00156 * 1 2 3 31 31 H 1.08994 * 109.46644 * 60.00215 * 1 2 3 32 32 H 1.09000 * 109.47357 * 240.00283 * 2 1 3 33 33 H 1.08998 * 109.47135 * 119.99731 * 2 1 3 34 34 H 0.97002 * 119.99653 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.47149 * 60.00703 * 6 4 3 36 36 H 1.08998 * 109.47150 * 299.99975 * 6 4 3 37 37 H 1.09001 * 109.47368 * 59.99588 * 7 6 4 38 38 H 1.09000 * 109.47146 * 300.00366 * 7 6 4 39 39 H 0.96999 * 119.99427 * 359.97438 * 10 8 7 40 40 H 1.09007 * 109.47206 * 59.99590 * 11 10 8 41 41 H 1.09000 * 109.47469 * 299.99790 * 11 10 8 42 42 H 1.09006 * 109.58473 * 54.79878 * 14 12 11 43 43 H 1.09000 * 109.58860 * 294.37183 * 14 12 11 44 44 H 0.97001 * 119.99475 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.58551 * 173.13817 * 24 15 14 46 46 H 1.09001 * 109.58984 * 293.56422 * 24 15 14 47 47 H 1.09007 * 109.56262 * 185.55083 * 25 24 15 48 48 H 1.08999 * 109.36168 * 65.49967 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0484 -0.0001 7 6 5.3758 3.0484 0.0001 8 6 5.8781 4.4691 0.0001 9 8 5.0900 5.3910 -0.0004 10 7 7.2032 4.7154 -0.0003 11 6 7.6915 6.0966 -0.0008 12 6 9.2215 6.0967 -0.0006 13 1 9.5852 5.5086 0.8420 14 6 9.7329 5.4858 -1.3091 15 7 11.1962 5.6117 -1.3496 16 6 11.9852 4.5137 -1.5660 17 1 11.6395 3.5337 -1.2714 18 6 13.2294 4.6600 -2.1640 19 7 13.5187 5.7640 -2.8195 20 14 14.4930 3.2900 -2.0381 21 1 15.3853 3.5445 -0.8787 22 1 13.7979 1.9910 -1.8520 23 1 15.3004 3.2454 -3.2836 24 6 11.7971 6.9371 -1.1474 25 6 11.2623 7.5326 0.1538 26 6 9.7322 7.5342 0.1206 27 9 9.2907 8.2799 -0.9778 28 9 9.2413 8.1055 1.2994 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 0.0004 35 1 3.4820 3.5626 0.8895 36 1 3.4828 3.5616 -0.8905 37 1 5.7392 2.5341 -0.8896 38 1 5.7390 2.5349 0.8903 39 1 7.8335 3.9781 -0.0003 40 1 7.3283 6.6108 0.8891 41 1 7.3280 6.6102 -0.8908 42 1 9.2969 6.0170 -2.1552 43 1 9.4554 4.4327 -1.3537 44 1 14.3883 5.8663 -3.2371 45 1 12.8811 6.8413 -1.0853 46 1 11.5329 7.5891 -1.9801 47 1 11.6249 8.5547 0.2636 48 1 11.6073 6.9314 0.9950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733474006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:53 Heat of formation + Delta-G solvation = -193.849740 kcal Electronic energy + Delta-G solvation = -30978.137023 eV Core-core repulsion = 26316.654758 eV Total energy + Delta-G solvation = -4661.482265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -49.98984 -47.94472 -41.13458 -40.40661 -38.95570 -36.41985 -36.29384 -34.40004 -33.94572 -32.37145 -31.98263 -31.30297 -27.79066 -27.04861 -25.89415 -24.08479 -23.54325 -22.88638 -21.71021 -21.26780 -20.94207 -19.06492 -18.61883 -18.28715 -17.68218 -17.29006 -17.23629 -17.04806 -16.87324 -16.78766 -16.43725 -16.33292 -15.85693 -15.39319 -15.17841 -14.98539 -14.78124 -14.62501 -14.41552 -14.26661 -14.16000 -13.80709 -13.72444 -13.38896 -13.26243 -13.18756 -13.05526 -12.99149 -12.89216 -12.68265 -12.60385 -12.37073 -12.25961 -12.16938 -12.14100 -11.90826 -11.64047 -11.34512 -10.94174 -10.91332 -10.57320 -10.14539 -10.08648 -8.80283 -7.90891 -5.37605 1.50438 1.52726 1.60726 1.61683 1.62215 1.93447 2.37727 2.49723 2.81777 3.17360 3.22902 3.29983 3.52356 3.56365 3.62313 3.91957 3.96127 4.04200 4.13212 4.14488 4.22483 4.23924 4.27461 4.51715 4.52940 4.56958 4.65683 4.69811 4.77534 4.85688 4.87584 4.90110 4.95394 4.98788 5.06543 5.10556 5.27174 5.29306 5.35979 5.49153 5.58997 5.66628 6.34015 6.48506 6.54678 7.08777 7.18845 7.24898 7.76382 8.28881 9.17188 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.002300 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.972859 B =12172.318897 C =14177.268186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.722 5.722 4 C 0.512 3.488 5 O -0.583 6.583 6 C -0.118 4.118 7 C -0.119 4.119 8 C 0.516 3.484 9 O -0.579 6.579 10 N -0.716 5.716 11 C 0.136 3.864 12 C -0.139 4.139 13 H 0.119 0.881 14 C 0.154 3.846 15 N -0.605 5.605 16 C -0.262 4.262 17 H 0.080 0.920 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.265 1.265 23 H -0.301 1.301 24 C 0.177 3.823 25 C -0.169 4.169 26 C 0.300 3.700 27 F -0.210 7.210 28 F -0.206 7.206 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.415 0.585 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.082 0.918 44 H 0.251 0.749 45 H 0.073 0.927 46 H 0.004 0.996 47 H 0.092 0.908 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.948 -6.314 8.633 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.015 4.015 3 N -0.375 5.375 4 C 0.300 3.700 5 O -0.464 6.464 6 C -0.158 4.158 7 C -0.159 4.159 8 C 0.304 3.696 9 O -0.459 6.459 10 N -0.369 5.369 11 C 0.011 3.989 12 C -0.160 4.160 13 H 0.137 0.863 14 C 0.028 3.972 15 N -0.328 5.328 16 C -0.391 4.391 17 H 0.097 0.903 18 C -0.243 4.243 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.212 1.212 22 H -0.190 1.190 23 H -0.228 1.228 24 C 0.051 3.949 25 C -0.209 4.209 26 C 0.263 3.737 27 F -0.191 7.191 28 F -0.187 7.187 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.252 0.748 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.022 0.978 47 H 0.110 0.890 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.847 -6.284 8.530 24.280 hybrid contribution 1.013 -0.077 -0.377 1.083 sum -20.834 -6.361 8.152 23.259 Atomic orbital electron populations 1.21957 0.92027 1.04123 1.03303 1.21376 0.96158 0.82516 1.01427 1.46041 1.06796 1.09902 1.74779 1.20945 0.82650 0.91606 0.74794 1.90709 1.56430 1.47815 1.51399 1.21326 0.95066 0.92623 1.06792 1.21336 0.96036 0.91764 1.06747 1.21035 0.81786 0.92106 0.74636 1.90686 1.55996 1.47801 1.51458 1.45900 1.07558 1.08569 1.74859 1.21071 0.91434 0.84129 1.02278 1.22777 0.95420 0.93999 1.03851 0.86332 1.20982 0.84199 0.99783 0.92239 1.44301 1.00535 1.04961 1.82984 1.19553 0.98495 0.88501 1.32592 0.90281 1.25824 1.01854 0.99503 0.97157 1.70177 1.22154 1.29103 1.36528 0.85254 0.79156 0.79613 0.76388 1.21245 1.18972 1.22788 1.20466 0.98672 0.84905 0.90825 1.23033 0.90794 1.03995 1.03063 1.21046 0.94275 0.87625 0.70754 1.92954 1.91281 1.79410 1.55459 1.92966 1.89873 1.87035 1.48868 0.89921 0.91105 0.91225 0.92661 0.92505 0.74677 0.87009 0.87315 0.87535 0.87109 0.74754 0.91014 0.92184 0.96594 0.89928 0.93998 0.90861 0.97835 0.88967 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.03 71.98 0.72 -0.11 16 2 C 0.11 1.27 6.39 86.38 0.55 1.83 16 3 N -0.72 -8.79 5.56 -463.05 -2.57 -11.36 16 4 C 0.51 9.31 7.83 87.66 0.69 10.00 16 5 O -0.58 -15.44 15.98 -3.02 -0.05 -15.49 16 6 C -0.12 -1.85 4.99 29.85 0.15 -1.70 16 7 C -0.12 -2.16 4.99 29.85 0.15 -2.01 16 8 C 0.52 12.31 7.83 87.65 0.69 13.00 16 9 O -0.58 -17.61 15.98 -3.05 -0.05 -17.66 16 10 N -0.72 -16.75 5.33 -463.05 -2.47 -19.22 16 11 C 0.14 3.81 4.83 86.38 0.42 4.23 16 12 C -0.14 -4.25 2.03 -10.72 -0.02 -4.28 16 13 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 14 C 0.15 5.71 5.40 86.36 0.47 6.17 16 15 N -0.61 -27.73 3.00 -699.90 -2.10 -29.83 16 16 C -0.26 -13.10 9.58 84.04 0.81 -12.30 16 17 H 0.08 3.75 7.89 -2.91 -0.02 3.72 16 18 C -0.05 -2.49 4.91 84.86 0.42 -2.08 16 19 N -0.93 -52.74 11.20 21.65 0.24 -52.50 16 20 Si 0.97 42.40 29.59 68.60 2.03 44.43 16 21 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 24 C 0.18 8.04 5.08 86.22 0.44 8.48 16 25 C -0.17 -5.98 5.60 30.53 0.17 -5.81 16 26 C 0.30 10.10 1.63 30.62 0.05 10.15 16 27 F -0.21 -7.92 15.73 44.97 0.71 -7.21 16 28 F -0.21 -6.62 16.41 44.97 0.74 -5.89 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.42 2.62 8.47 -92.71 -0.79 1.84 16 35 H 0.11 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.11 1.92 8.10 -2.39 -0.02 1.90 16 38 H 0.11 1.85 8.10 -2.39 -0.02 1.83 16 39 H 0.42 8.14 7.70 -92.71 -0.71 7.43 16 40 H 0.07 2.05 7.63 -2.38 -0.02 2.04 16 41 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 42 H 0.02 0.65 7.92 -2.38 -0.02 0.63 16 43 H 0.08 2.76 7.13 -2.39 -0.02 2.75 16 44 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.07 3.73 6.06 -2.38 -0.01 3.71 16 46 H 0.00 0.18 7.92 -2.39 -0.02 0.16 16 47 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 48 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -69.71 395.75 1.66 -68.05 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.51 Total: 21.07 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 5.69 Total: 25.58 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -6.90 Total: -112.91 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.10 Total: -33.14 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 1.45 Total: -13.10 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.71 1.66 -68.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733474006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.795 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds