Wall clock time and date at job start Wed Apr 1 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00272 * 2 1 4 4 H 1.08004 * 119.99635 * 323.28719 * 3 2 1 5 5 C 1.38811 * 120.00083 * 143.28021 * 3 2 1 6 6 N 1.31621 * 120.00123 * 157.55517 * 5 3 2 7 7 Si 1.86801 * 119.99936 * 337.56353 * 5 3 2 8 8 H 1.48499 * 109.47244 * 91.02390 * 7 5 3 9 9 H 1.48503 * 109.46935 * 211.02259 * 7 5 3 10 10 H 1.48501 * 109.47281 * 331.01759 * 7 5 3 11 11 C 1.46502 * 119.99869 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47558 * 90.00053 * 11 2 1 13 13 C 1.52996 * 109.47518 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47528 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00210 * 269.99955 * 14 13 12 16 16 C 1.34780 * 119.99783 * 90.00019 * 14 13 12 17 17 O 1.21528 * 120.00058 * 3.71061 * 16 14 13 18 18 C 1.48001 * 119.99934 * 183.71718 * 16 14 13 19 19 C 1.39651 * 119.95381 * 148.96394 * 18 16 14 20 20 C 1.37657 * 120.04617 * 179.97438 * 19 18 16 21 21 C 1.40042 * 119.95275 * 0.02562 * 20 19 18 22 22 N 1.36255 * 120.04419 * 179.97438 * 21 20 19 23 23 N 1.29000 * 119.99470 * 179.97438 * 22 21 20 24 24 C 1.34780 * 119.99611 * 179.97438 * 23 22 21 25 25 N 1.34772 * 120.00145 * 180.02562 * 24 23 22 26 26 O 1.21563 * 120.00027 * 0.02562 * 24 23 22 27 27 C 1.40033 * 119.90804 * 0.24990 * 21 20 19 28 28 C 1.37661 * 119.95244 * 359.50986 * 27 21 20 29 29 H 1.09001 * 109.47394 * 265.09582 * 1 2 3 30 30 H 1.09003 * 109.46992 * 25.09673 * 1 2 3 31 31 H 1.09006 * 109.47275 * 145.09426 * 1 2 3 32 32 H 0.96997 * 120.00233 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47088 * 329.99814 * 11 2 1 34 34 H 1.09000 * 109.46952 * 210.00218 * 11 2 1 35 35 H 1.08996 * 109.47115 * 59.99778 * 12 11 2 36 36 H 1.09000 * 109.47124 * 300.00061 * 12 11 2 37 37 H 1.09002 * 109.47609 * 59.99587 * 13 12 11 38 38 H 1.09000 * 109.46888 * 300.00101 * 13 12 11 39 39 H 1.08992 * 109.47021 * 273.91858 * 15 14 13 40 40 H 1.08998 * 109.46841 * 33.92391 * 15 14 13 41 41 H 1.09002 * 109.47124 * 153.92102 * 15 14 13 42 42 H 1.08004 * 119.97557 * 359.97438 * 19 18 16 43 43 H 1.08005 * 120.02292 * 179.97438 * 20 19 18 44 44 H 0.97007 * 119.99447 * 0.02562 * 25 24 23 45 45 H 0.96999 * 119.99856 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.02402 * 179.73141 * 27 21 20 47 47 H 1.08001 * 119.98029 * 180.20946 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7704 2.0284 -0.5592 5 6 3.3312 1.3051 0.7188 6 7 4.2073 2.2328 0.3957 7 14 3.6780 0.1488 2.1443 8 1 4.4158 -1.0407 1.6486 9 1 4.4989 0.8514 3.1631 10 1 2.3950 -0.2832 2.7547 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 6 3.2169 -3.0352 -1.4438 14 7 3.4606 -3.4579 -2.8251 15 6 2.4834 -4.3031 -3.5157 16 6 4.5838 -3.0691 -3.4606 17 8 5.4258 -2.4247 -2.8668 18 6 4.7916 -3.4269 -4.8815 19 6 5.5216 -2.5768 -5.7151 20 6 5.7165 -2.9080 -7.0369 21 6 5.1818 -4.0981 -7.5458 22 7 5.3731 -4.4274 -8.8540 23 7 4.8806 -5.5241 -9.3216 24 6 5.0694 -5.8497 -10.6158 25 7 4.5544 -6.9952 -11.1046 26 8 5.7043 -5.1101 -11.3422 27 6 4.4452 -4.9462 -6.7097 28 6 4.2569 -4.6137 -5.3872 29 1 -0.3634 -0.0879 1.0239 30 1 -0.3633 0.9307 -0.4359 31 1 -0.3634 -0.8428 -0.5881 32 1 5.0331 2.3159 0.8977 33 1 1.6084 -2.0286 0.5129 34 1 3.1498 -1.1387 0.5134 35 1 3.0416 -0.9500 -1.9567 36 1 1.5001 -1.8400 -1.9571 37 1 2.6275 -3.7949 -0.9304 38 1 4.1693 -2.9055 -0.9297 39 1 2.6835 -5.3501 -3.2882 40 1 1.4787 -4.0442 -3.1817 41 1 2.5610 -4.1438 -4.5913 42 1 5.9334 -1.6589 -5.3223 43 1 6.2807 -2.2500 -7.6813 44 1 4.0475 -7.5852 -10.5249 45 1 4.6906 -7.2297 -12.0359 46 1 4.0283 -5.8624 -7.1012 47 1 3.6917 -5.2692 -4.7411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733782083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:10 Heat of formation + Delta-G solvation = 58.959186 kcal Electronic energy + Delta-G solvation = -29363.259926 eV Core-core repulsion = 25163.429465 eV Total energy + Delta-G solvation = -4199.830461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.07689 -40.53813 -39.03313 -38.17684 -37.04619 -36.47575 -34.97191 -33.75471 -33.51899 -31.07055 -30.49334 -30.39355 -28.58408 -27.45541 -26.40769 -25.14091 -23.73688 -22.50692 -22.02055 -20.77905 -20.25099 -19.79651 -19.37505 -17.86592 -17.77099 -17.70489 -17.31897 -16.91683 -16.56626 -16.32915 -16.00403 -15.76983 -15.58608 -15.09579 -14.90224 -14.82203 -14.72677 -14.57953 -14.11438 -13.99318 -13.69849 -13.62005 -13.49843 -13.42451 -13.14214 -13.04712 -12.95724 -12.86929 -12.41117 -12.30618 -12.07584 -11.86029 -11.48854 -11.09919 -11.04412 -10.94755 -10.91702 -10.33483 -10.12593 -9.96967 -9.48153 -9.08851 -8.29307 -7.55062 -5.39165 -1.96569 0.28209 0.55029 0.86048 1.19580 1.35172 1.52516 1.57868 1.76182 2.35557 2.56658 2.61258 3.26888 3.54576 3.54765 3.57871 3.65588 3.82015 3.84746 3.99218 4.13215 4.27548 4.38843 4.48379 4.49347 4.54639 4.59097 4.67957 4.70389 4.74969 4.84189 4.91103 4.94019 5.04145 5.14595 5.24904 5.26974 5.35517 5.58791 5.87870 5.96179 6.08616 6.30405 6.34290 6.43839 6.76222 6.77072 6.98564 7.11079 7.51572 7.71103 8.17535 8.60488 9.95334 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.001953 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.237290 B =14334.079761 C =14725.022175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.447 5.447 3 C 0.390 3.610 4 H 0.260 0.740 5 C -0.102 4.102 6 N -0.506 5.506 7 Si 0.955 3.045 8 H -0.243 1.243 9 H -0.249 1.249 10 H -0.179 1.179 11 C 0.049 3.951 12 C -0.144 4.144 13 C 0.109 3.891 14 N -0.620 5.620 15 C 0.069 3.931 16 C 0.587 3.413 17 O -0.617 6.617 18 C -0.396 4.396 19 C -0.007 4.007 20 C -0.275 4.275 21 C 0.096 3.904 22 N -0.479 5.479 23 N -0.642 5.642 24 C 0.574 3.426 25 N -0.852 5.852 26 O -0.767 6.767 27 C -0.283 4.283 28 C -0.031 4.031 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.376 0.624 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.393 0.607 45 H 0.393 0.607 46 H 0.062 0.938 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.126 27.333 63.775 75.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.117 5.117 3 C 0.211 3.789 4 H 0.276 0.724 5 C -0.340 4.340 6 N -0.130 5.130 7 Si 0.769 3.231 8 H -0.168 1.168 9 H -0.173 1.173 10 H -0.098 1.098 11 C -0.071 4.071 12 C -0.183 4.183 13 C -0.013 4.013 14 N -0.352 5.352 15 C -0.073 4.073 16 C 0.385 3.615 17 O -0.503 6.503 18 C -0.405 4.405 19 C -0.029 4.029 20 C -0.298 4.298 21 C -0.067 4.067 22 N -0.305 5.305 23 N -0.522 5.522 24 C 0.272 3.728 25 N -0.419 5.419 26 O -0.664 6.664 27 C -0.306 4.306 28 C -0.053 4.053 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.133 0.867 32 H 0.195 0.805 33 H 0.188 0.812 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.221 0.779 45 H 0.222 0.778 46 H 0.080 0.920 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -29.323 27.819 63.180 75.003 hybrid contribution 1.370 -0.751 -1.282 2.021 sum -27.953 27.068 61.897 73.112 Atomic orbital electron populations 1.23597 0.69971 1.09648 1.08321 1.49112 1.12560 1.06240 1.43817 1.25841 0.87495 0.90921 0.74618 0.72421 1.28325 0.96817 1.02203 1.06686 1.69724 1.04887 1.10277 1.28080 0.85422 0.86088 0.77449 0.74178 1.16847 1.17300 1.09848 1.23175 1.00127 0.84862 0.98981 1.22313 1.02931 0.98147 0.94949 1.21482 1.01048 0.96658 0.82132 1.47527 1.20425 1.52659 1.14583 1.22352 0.92371 0.93740 0.98869 1.18139 0.80638 0.77024 0.85656 1.90475 1.45638 1.45703 1.68465 1.18234 1.24140 1.03783 0.94303 1.20096 0.94920 0.96632 0.91261 1.19730 1.14260 0.99707 0.96141 1.18969 1.01156 0.96295 0.90283 1.71581 1.28584 1.17765 1.12575 1.71511 1.46112 1.22830 1.11712 1.18477 0.83065 0.83301 0.87965 1.41899 1.63143 1.23669 1.13227 1.90391 1.54362 1.56443 1.65200 1.20679 1.12235 1.01731 0.95994 1.21073 0.95830 0.95352 0.93016 0.84044 0.84644 0.86711 0.80458 0.81171 0.88387 0.92918 0.87757 0.86132 0.91663 0.92531 0.87566 0.91923 0.89020 0.92872 0.77934 0.77803 0.91976 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.63 10.70 127.77 1.37 0.74 16 2 N -0.45 10.15 2.50 -726.94 -1.81 8.33 16 3 C 0.39 -8.89 9.90 84.03 0.83 -8.06 16 4 H 0.26 -7.91 8.06 -2.91 -0.02 -7.93 16 5 C -0.10 1.62 5.31 84.86 0.45 2.07 16 6 N -0.51 4.98 13.97 21.65 0.30 5.28 16 7 Si 0.96 -12.68 25.19 68.60 1.73 -10.95 16 8 H -0.24 1.74 6.46 99.48 0.64 2.38 16 9 H -0.25 2.17 7.11 99.48 0.71 2.88 16 10 H -0.18 3.45 7.11 99.48 0.71 4.15 16 11 C 0.05 -0.74 4.53 86.38 0.39 -0.35 16 12 C -0.14 0.17 5.86 30.59 0.18 0.35 16 13 C 0.11 1.13 5.45 86.38 0.47 1.60 16 14 N -0.62 -16.83 2.87 -850.04 -2.44 -19.27 16 15 C 0.07 1.70 8.78 127.77 1.12 2.83 16 16 C 0.59 25.60 7.45 86.83 0.65 26.25 16 17 O -0.62 -28.66 16.28 -3.80 -0.06 -28.73 16 18 C -0.40 -22.65 5.49 -20.01 -0.11 -22.76 16 19 C -0.01 -0.45 9.57 22.47 0.22 -0.24 16 20 C -0.27 -21.01 9.99 22.57 0.23 -20.78 16 21 C 0.10 8.02 6.67 39.33 0.26 8.28 16 22 N -0.48 -44.91 10.78 -52.01 -0.56 -45.47 16 23 N -0.64 -57.99 10.04 -184.77 -1.85 -59.84 16 24 C 0.57 49.55 8.92 179.05 1.60 51.15 16 25 N -0.85 -56.60 8.88 -184.77 -1.64 -58.24 16 26 O -0.77 -72.59 17.48 -3.92 -0.07 -72.66 16 27 C -0.28 -21.06 9.47 22.57 0.21 -20.85 16 28 C -0.03 -1.86 7.43 22.47 0.17 -1.69 16 29 H 0.14 -4.56 8.14 -2.39 -0.02 -4.58 16 30 H 0.14 -4.33 8.00 -2.39 -0.02 -4.35 16 31 H 0.11 -3.07 8.11 -2.38 -0.02 -3.09 16 32 H 0.38 -3.90 8.31 -92.71 -0.77 -4.67 16 33 H 0.17 -3.83 8.07 -2.39 -0.02 -3.85 16 34 H 0.10 -1.27 3.04 -2.39 -0.01 -1.28 16 35 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.12 0.14 8.07 -2.39 -0.02 0.12 16 38 H 0.06 0.96 7.37 -2.39 -0.02 0.94 16 39 H 0.06 1.35 7.38 -2.39 -0.02 1.33 16 40 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 41 H 0.06 2.29 4.77 -2.39 -0.01 2.28 16 42 H 0.09 5.41 7.93 -2.91 -0.02 5.39 16 43 H 0.05 4.13 8.06 -2.91 -0.02 4.11 16 44 H 0.39 23.34 8.93 -92.70 -0.83 22.51 16 45 H 0.39 22.88 8.93 -92.71 -0.83 22.05 16 46 H 0.06 4.82 7.37 -2.91 -0.02 4.80 16 47 H 0.13 6.28 4.69 -2.91 -0.01 6.27 16 Total: -1.00 -213.33 393.80 0.94 -212.39 By element: Atomic # 1 Polarization: 51.30 SS G_CDS: -0.68 Total: 50.61 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 8.03 Total: 18.54 kcal Atomic # 7 Polarization: -161.20 SS G_CDS: -8.01 Total: -169.21 kcal Atomic # 8 Polarization: -101.26 SS G_CDS: -0.13 Total: -101.39 kcal Atomic # 14 Polarization: -12.68 SS G_CDS: 1.73 Total: -10.95 kcal Total: -213.33 0.94 -212.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733782083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 271.350 kcal (2) G-P(sol) polarization free energy of solvation -213.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -212.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds