Wall clock time and date at job start Wed Apr 1 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99900 * 2 1 4 4 C 1.50694 * 109.47242 * 66.04526 * 3 2 1 5 5 O 1.21293 * 120.00046 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00039 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00070 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99967 * 359.97438 * 7 6 4 9 9 C 1.38950 * 120.00114 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99728 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00339 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47372 * 89.99451 * 11 9 7 13 13 H 1.48496 * 109.47292 * 210.00188 * 11 9 7 14 14 H 1.48508 * 109.46744 * 329.99822 * 11 9 7 15 15 C 1.46902 * 111.00166 * 236.04506 * 2 1 3 16 16 C 1.53002 * 109.46838 * 288.11595 * 15 2 1 17 17 H 1.08997 * 110.00218 * 54.17165 * 16 15 2 18 18 C 1.54325 * 109.88129 * 293.07779 * 16 15 2 19 19 C 1.55163 * 102.94348 * 218.39177 * 18 16 15 20 20 C 1.54691 * 101.67604 * 35.33677 * 19 18 16 21 21 N 1.47021 * 109.88063 * 175.27181 * 16 15 2 22 22 C 1.34768 * 125.64882 * 298.31719 * 21 16 15 23 23 O 1.21518 * 120.00238 * 354.62128 * 22 21 16 24 24 C 1.48154 * 120.00337 * 174.62241 * 22 21 16 25 25 C 1.39440 * 120.10085 * 180.02562 * 24 22 21 26 26 N 1.32080 * 119.87272 * 179.72629 * 25 24 22 27 27 C 1.32138 * 120.07269 * 0.53114 * 26 25 24 28 28 C 1.38733 * 120.19323 * 359.44392 * 27 26 25 29 29 N 1.31799 * 120.12607 * 0.30073 * 28 27 26 30 30 H 1.08999 * 109.46588 * 180.45164 * 1 2 3 31 31 H 1.08991 * 109.46833 * 300.45088 * 1 2 3 32 32 H 1.08995 * 109.46849 * 60.45464 * 1 2 3 33 33 H 1.09004 * 109.46896 * 186.04697 * 3 2 1 34 34 H 1.09007 * 109.46992 * 306.04082 * 3 2 1 35 35 H 0.96999 * 119.99794 * 359.97438 * 6 4 3 36 36 H 0.97002 * 119.99977 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47401 * 168.11374 * 15 2 1 38 38 H 1.08999 * 109.47132 * 48.11127 * 15 2 1 39 39 H 1.09000 * 110.71791 * 336.75513 * 18 16 15 40 40 H 1.09004 * 110.72296 * 99.85191 * 18 16 15 41 41 H 1.09001 * 111.00135 * 153.57334 * 19 18 16 42 42 H 1.08992 * 111.00445 * 277.38899 * 19 18 16 43 43 H 1.08995 * 110.39301 * 204.36390 * 20 19 18 44 44 H 1.09004 * 110.23646 * 82.10996 * 20 19 18 45 45 H 1.08001 * 120.06256 * 359.97438 * 25 24 22 46 46 H 1.07994 * 119.90218 * 179.72332 * 27 26 25 47 47 H 1.07993 * 119.93310 * 180.27747 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0180 3.3203 1.5232 7 6 1.6923 3.9348 2.7046 8 1 1.1300 3.3989 3.4550 9 6 2.0856 5.2471 2.9366 10 7 2.7703 5.8989 2.0238 11 14 1.6413 6.0847 4.5460 12 1 2.7179 5.8481 5.5411 13 1 1.4891 7.5443 4.3189 14 1 0.3633 5.5275 5.0576 15 6 1.9956 -0.7660 -1.1376 16 6 1.7596 -2.2589 -0.9000 17 1 0.7047 -2.4418 -0.6957 18 6 2.6160 -2.7430 0.2890 19 6 3.0788 -4.1521 -0.1668 20 6 3.2651 -3.9434 -1.6882 21 7 2.1802 -3.0258 -2.0817 22 6 1.6569 -2.9130 -3.3185 23 8 0.6939 -2.1964 -3.5077 24 6 2.2555 -3.6626 -4.4475 25 6 1.7160 -3.5469 -5.7281 26 7 2.2566 -4.2130 -6.7323 27 6 3.3002 -4.9958 -6.5222 28 6 3.8397 -5.1126 -5.2494 29 7 3.3095 -4.4476 -4.2426 30 1 -0.3632 -1.0277 0.0081 31 1 -0.3633 0.5208 0.8859 32 1 -0.3633 0.5067 -0.8940 33 1 3.0798 1.3444 -0.1083 34 1 1.5612 1.9273 -0.8310 35 1 2.5234 3.8014 0.8494 36 1 3.0452 6.8150 2.1859 37 1 3.0646 -0.5786 -1.2382 38 1 1.4852 -0.4582 -2.0502 39 1 3.4725 -2.0859 0.4401 40 1 2.0154 -2.8062 1.1965 41 1 4.0197 -4.4274 0.3096 42 1 2.3099 -4.8988 0.0311 43 1 3.1696 -4.8922 -2.2162 44 1 4.2362 -3.4916 -1.8907 45 1 0.8601 -2.9107 -5.8991 46 1 3.7373 -5.5426 -7.3445 47 1 4.6954 -5.7501 -5.0833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733925483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:45 Heat of formation + Delta-G solvation = 7.031406 kcal Electronic energy + Delta-G solvation = -30218.873153 eV Core-core repulsion = 26016.790934 eV Total energy + Delta-G solvation = -4202.082219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.75835 -40.16913 -38.53424 -37.70491 -36.05967 -34.93846 -33.80764 -32.40704 -31.52200 -31.21630 -30.32048 -27.72008 -26.26051 -26.03686 -25.04111 -24.61223 -23.26177 -21.90855 -21.17106 -19.66826 -19.10060 -18.26433 -17.79484 -17.55554 -17.20136 -16.85197 -16.09998 -15.80558 -15.43498 -15.18740 -14.99487 -14.60923 -14.54223 -14.28055 -14.01437 -13.72025 -13.49153 -13.39879 -13.26093 -13.03746 -12.74499 -12.41632 -12.27145 -12.01766 -11.85082 -11.65001 -11.46289 -11.22687 -11.19848 -11.10270 -10.90090 -10.81682 -10.67609 -10.55174 -10.37037 -10.18696 -9.98282 -9.55599 -9.44208 -8.89864 -8.36217 -7.93747 -7.78241 -6.38309 -3.78881 -0.10714 0.50263 2.34685 2.51890 3.20032 3.28349 3.29659 3.34232 3.41507 3.66746 3.87749 3.95147 4.07493 4.18758 4.32006 4.48734 4.54107 4.61459 4.74084 4.83820 4.98529 5.03755 5.13355 5.26479 5.28582 5.34742 5.55248 5.62773 5.70089 5.73304 5.76168 5.83737 5.84181 5.91709 5.99218 6.02217 6.12110 6.21559 6.28970 6.33643 6.56489 6.65147 7.07081 7.22187 7.33771 7.43488 7.58430 7.78611 8.10180 8.65924 9.21787 9.58647 10.10737 10.79559 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.001999 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.847198 B =14005.306199 C =14464.703657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.512 5.512 3 C 0.047 3.953 4 C 0.446 3.554 5 O -0.577 6.577 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.045 3.955 16 C 0.142 3.858 17 H 0.082 0.918 18 C -0.111 4.111 19 C -0.142 4.142 20 C 0.110 3.890 21 N -0.593 5.593 22 C 0.585 3.415 23 O -0.524 6.524 24 C 0.035 3.965 25 C 0.111 3.889 26 N -0.440 5.440 27 C 0.070 3.930 28 C 0.047 3.953 29 N -0.407 5.407 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.016 0.984 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.183 0.817 46 H 0.176 0.824 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 -23.869 -15.717 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.236 5.236 3 C -0.084 4.084 4 C 0.232 3.768 5 O -0.461 6.461 6 N -0.203 5.203 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.181 4.181 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.084 4.084 16 C 0.039 3.961 17 H 0.100 0.900 18 C -0.149 4.149 19 C -0.180 4.180 20 C -0.013 4.013 21 N -0.325 5.325 22 C 0.370 3.630 23 O -0.399 6.399 24 C -0.106 4.106 25 C -0.049 4.049 26 N -0.154 5.154 27 C -0.090 4.090 28 C -0.116 4.116 29 N -0.125 5.125 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.200 0.800 46 H 0.193 0.807 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.366 -23.860 -14.865 28.449 hybrid contribution 0.114 1.162 -0.561 1.295 sum 4.480 -22.699 -15.426 27.808 Atomic orbital electron populations 1.22572 0.86630 1.01429 1.01932 1.61500 1.08781 1.12681 1.40668 1.21869 1.00492 0.88918 0.97159 1.19717 0.85338 0.82895 0.88872 1.90475 1.43798 1.64669 1.47119 1.41869 1.49563 1.10773 1.18045 1.19690 1.32839 0.95420 0.94703 0.87917 1.25260 0.96926 0.96671 0.99208 1.69616 1.38185 1.12248 1.34374 0.85860 0.79064 0.78042 0.81323 1.20440 1.20996 1.19446 1.22426 1.00260 0.92801 0.92958 1.21646 0.99906 0.90760 0.83774 0.89997 1.22567 1.00216 0.95146 0.96993 1.22890 1.02346 0.97989 0.94779 1.22495 0.89851 0.94154 0.94794 1.48395 1.36849 1.39468 1.07806 1.17273 0.82967 0.81646 0.81099 1.90841 1.25976 1.39924 1.83202 1.22193 0.94971 0.97885 0.95508 1.23870 0.98457 0.94897 0.87679 1.68655 1.08674 1.04889 1.33142 1.24141 0.92146 0.94517 0.98236 1.23949 1.00121 0.97870 0.89614 1.68647 1.06977 1.03301 1.33586 0.92339 0.88525 0.96546 0.89569 0.93506 0.77527 0.91934 0.91009 0.93744 0.89971 0.89321 0.89715 0.90918 0.88961 0.91171 0.79964 0.80688 0.80486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.04 60.07 0.54 0.93 16 2 N -0.51 -8.83 4.25 -244.37 -1.04 -9.87 16 3 C 0.05 0.88 5.44 -4.98 -0.03 0.85 16 4 C 0.45 10.66 7.50 -10.98 -0.08 10.57 16 5 O -0.58 -15.49 13.89 5.55 0.08 -15.41 16 6 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 11 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.04 0.65 4.37 -3.82 -0.02 0.63 16 16 C 0.14 1.79 2.89 -66.95 -0.19 1.60 16 17 H 0.08 1.14 6.54 -51.93 -0.34 0.80 16 18 C -0.11 -1.21 6.29 -24.89 -0.16 -1.36 16 19 C -0.14 -1.14 7.07 -24.70 -0.17 -1.32 16 20 C 0.11 0.95 5.72 -2.64 -0.02 0.94 16 21 N -0.59 -6.79 3.07 -164.14 -0.50 -7.30 16 22 C 0.58 7.34 7.56 -12.19 -0.09 7.25 16 23 O -0.52 -8.06 15.54 5.35 0.08 -7.97 16 24 C 0.04 0.36 6.71 -82.84 -0.56 -0.20 16 25 C 0.11 1.05 10.77 -17.00 -0.18 0.87 16 26 N -0.44 -3.76 10.49 -12.71 -0.13 -3.89 16 27 C 0.07 0.38 11.23 -17.24 -0.19 0.19 16 28 C 0.05 0.24 11.22 -17.38 -0.20 0.05 16 29 N -0.41 -3.34 6.94 -9.61 -0.07 -3.41 16 30 H 0.06 0.91 6.50 -51.93 -0.34 0.58 16 31 H 0.10 1.98 5.87 -51.93 -0.30 1.68 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 1.45 7.86 -51.93 -0.41 1.04 16 34 H 0.05 0.83 8.12 -51.92 -0.42 0.41 16 35 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.07 0.99 7.70 -51.93 -0.40 0.59 16 38 H 0.04 0.71 6.82 -51.93 -0.35 0.36 16 39 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.74 6.30 -51.93 -0.33 0.42 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.18 1.64 7.65 -52.49 -0.40 1.24 16 46 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 47 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -33.99 385.69 -8.20 -42.19 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.49 Total: 9.35 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -1.58 Total: 12.98 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -1.08 Total: -63.16 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.16 Total: -23.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.99 -8.20 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733925483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.220 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds