Wall clock time and date at job start Wed Apr 1 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99900 * 2 1 4 4 C 1.50694 * 109.47242 * 66.04526 * 3 2 1 5 5 O 1.21293 * 120.00046 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00039 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00070 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99967 * 359.97438 * 7 6 4 9 9 C 1.38950 * 120.00114 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99728 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00339 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47372 * 89.99451 * 11 9 7 13 13 H 1.48496 * 109.47292 * 210.00188 * 11 9 7 14 14 H 1.48508 * 109.46744 * 329.99822 * 11 9 7 15 15 C 1.46902 * 111.00166 * 236.04506 * 2 1 3 16 16 C 1.53002 * 109.46838 * 288.11595 * 15 2 1 17 17 H 1.08997 * 110.00218 * 54.17165 * 16 15 2 18 18 C 1.54325 * 109.88129 * 293.07779 * 16 15 2 19 19 C 1.55163 * 102.94348 * 218.39177 * 18 16 15 20 20 C 1.54691 * 101.67604 * 35.33677 * 19 18 16 21 21 N 1.47021 * 109.88063 * 175.27181 * 16 15 2 22 22 C 1.34768 * 125.64882 * 298.31719 * 21 16 15 23 23 O 1.21518 * 120.00238 * 354.62128 * 22 21 16 24 24 C 1.48154 * 120.00337 * 174.62241 * 22 21 16 25 25 C 1.39440 * 120.10085 * 180.02562 * 24 22 21 26 26 N 1.32080 * 119.87272 * 179.72629 * 25 24 22 27 27 C 1.32138 * 120.07269 * 0.53114 * 26 25 24 28 28 C 1.38733 * 120.19323 * 359.44392 * 27 26 25 29 29 N 1.31799 * 120.12607 * 0.30073 * 28 27 26 30 30 H 1.08999 * 109.46588 * 180.45164 * 1 2 3 31 31 H 1.08991 * 109.46833 * 300.45088 * 1 2 3 32 32 H 1.08995 * 109.46849 * 60.45464 * 1 2 3 33 33 H 1.09004 * 109.46896 * 186.04697 * 3 2 1 34 34 H 1.09007 * 109.46992 * 306.04082 * 3 2 1 35 35 H 0.96999 * 119.99794 * 359.97438 * 6 4 3 36 36 H 0.97002 * 119.99977 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47401 * 168.11374 * 15 2 1 38 38 H 1.08999 * 109.47132 * 48.11127 * 15 2 1 39 39 H 1.09000 * 110.71791 * 336.75513 * 18 16 15 40 40 H 1.09004 * 110.72296 * 99.85191 * 18 16 15 41 41 H 1.09001 * 111.00135 * 153.57334 * 19 18 16 42 42 H 1.08992 * 111.00445 * 277.38899 * 19 18 16 43 43 H 1.08995 * 110.39301 * 204.36390 * 20 19 18 44 44 H 1.09004 * 110.23646 * 82.10996 * 20 19 18 45 45 H 1.08001 * 120.06256 * 359.97438 * 25 24 22 46 46 H 1.07994 * 119.90218 * 179.72332 * 27 26 25 47 47 H 1.07993 * 119.93310 * 180.27747 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0180 3.3203 1.5232 7 6 1.6923 3.9348 2.7046 8 1 1.1300 3.3989 3.4550 9 6 2.0856 5.2471 2.9366 10 7 2.7703 5.8989 2.0238 11 14 1.6413 6.0847 4.5460 12 1 2.7179 5.8481 5.5411 13 1 1.4891 7.5443 4.3189 14 1 0.3633 5.5275 5.0576 15 6 1.9956 -0.7660 -1.1376 16 6 1.7596 -2.2589 -0.9000 17 1 0.7047 -2.4418 -0.6957 18 6 2.6160 -2.7430 0.2890 19 6 3.0788 -4.1521 -0.1668 20 6 3.2651 -3.9434 -1.6882 21 7 2.1802 -3.0258 -2.0817 22 6 1.6569 -2.9130 -3.3185 23 8 0.6939 -2.1964 -3.5077 24 6 2.2555 -3.6626 -4.4475 25 6 1.7160 -3.5469 -5.7281 26 7 2.2566 -4.2130 -6.7323 27 6 3.3002 -4.9958 -6.5222 28 6 3.8397 -5.1126 -5.2494 29 7 3.3095 -4.4476 -4.2426 30 1 -0.3632 -1.0277 0.0081 31 1 -0.3633 0.5208 0.8859 32 1 -0.3633 0.5067 -0.8940 33 1 3.0798 1.3444 -0.1083 34 1 1.5612 1.9273 -0.8310 35 1 2.5234 3.8014 0.8494 36 1 3.0452 6.8150 2.1859 37 1 3.0646 -0.5786 -1.2382 38 1 1.4852 -0.4582 -2.0502 39 1 3.4725 -2.0859 0.4401 40 1 2.0154 -2.8062 1.1965 41 1 4.0197 -4.4274 0.3096 42 1 2.3099 -4.8988 0.0311 43 1 3.1696 -4.8922 -2.2162 44 1 4.2362 -3.4916 -1.8907 45 1 0.8601 -2.9107 -5.8991 46 1 3.7373 -5.5426 -7.3445 47 1 4.6954 -5.7501 -5.0833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733925483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:44 Heat of formation + Delta-G solvation = -18.530585 kcal Electronic energy + Delta-G solvation = -30219.981604 eV Core-core repulsion = 26016.790934 eV Total energy + Delta-G solvation = -4203.190670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.38921 -41.07301 -40.27438 -38.79334 -37.46511 -35.86160 -35.52534 -33.28439 -33.10633 -32.25480 -31.40872 -29.30731 -27.46327 -26.85088 -26.35828 -25.60360 -24.24265 -23.05556 -22.03279 -21.01048 -20.57142 -19.85418 -18.96571 -18.21999 -18.01449 -17.78978 -17.45733 -16.84656 -16.63797 -16.49855 -16.22383 -16.00978 -15.66266 -15.51983 -15.25093 -15.07321 -14.94931 -14.42098 -14.16253 -14.04723 -13.76930 -13.69203 -13.49962 -13.24630 -13.07289 -12.92365 -12.79189 -12.62889 -12.45280 -12.41658 -12.39351 -12.11821 -11.83762 -11.80407 -11.54960 -11.49419 -11.45304 -10.56253 -10.32509 -10.15134 -9.99894 -9.75608 -9.28131 -8.45692 -5.94249 -0.70774 -0.03077 1.38357 1.41732 1.52955 1.55003 1.66598 2.05117 2.28841 2.67205 2.69395 2.89263 3.15909 3.20684 3.36370 3.39146 3.52935 3.65973 3.80592 3.86478 4.08962 4.20015 4.22362 4.24660 4.30858 4.34875 4.38348 4.48816 4.52045 4.55081 4.60750 4.67171 4.73794 4.95630 5.02364 5.05228 5.13764 5.17853 5.24050 5.36927 5.41942 5.42817 5.81876 6.00536 6.03278 6.09391 6.33042 6.57726 6.61109 6.88308 7.13553 7.56624 8.12238 8.71866 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.001999 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.847198 B =14005.306199 C =14464.703657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.518 5.518 3 C 0.057 3.943 4 C 0.445 3.555 5 O -0.609 6.609 6 N -0.575 5.575 7 C -0.330 4.330 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.922 5.922 11 Si 0.994 3.006 12 H -0.270 1.270 13 H -0.272 1.272 14 H -0.273 1.273 15 C 0.054 3.946 16 C 0.143 3.857 17 H 0.064 0.936 18 C -0.109 4.109 19 C -0.129 4.129 20 C 0.111 3.889 21 N -0.593 5.593 22 C 0.578 3.422 23 O -0.566 6.566 24 C 0.014 3.986 25 C 0.098 3.902 26 N -0.463 5.463 27 C 0.084 3.916 28 C 0.059 3.941 29 N -0.416 5.416 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.016 0.984 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.277 0.723 37 H 0.083 0.917 38 H 0.028 0.972 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.172 0.828 46 H 0.218 0.782 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.576 -25.908 -16.622 31.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.242 5.242 3 C -0.074 4.074 4 C 0.233 3.767 5 O -0.495 6.495 6 N -0.212 5.212 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.215 4.215 10 N -0.563 5.563 11 Si 0.818 3.182 12 H -0.195 1.195 13 H -0.197 1.197 14 H -0.198 1.198 15 C -0.074 4.074 16 C 0.040 3.960 17 H 0.082 0.918 18 C -0.147 4.147 19 C -0.167 4.167 20 C -0.010 4.010 21 N -0.324 5.324 22 C 0.366 3.634 23 O -0.445 6.445 24 C -0.124 4.124 25 C -0.059 4.059 26 N -0.177 5.177 27 C -0.078 4.078 28 C -0.104 4.104 29 N -0.134 5.134 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.189 0.811 46 H 0.235 0.765 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.793 -25.897 -15.771 31.073 hybrid contribution -0.559 1.652 -0.405 1.790 sum 6.235 -24.245 -16.176 29.805 Atomic orbital electron populations 1.22411 0.87109 1.01954 1.00266 1.61480 1.08469 1.12054 1.42233 1.21761 1.02042 0.89397 0.94188 1.20590 0.83786 0.82254 0.90113 1.90456 1.44905 1.65313 1.48843 1.41931 1.50136 1.11495 1.17687 1.19664 1.34311 0.96386 0.95571 0.90142 1.26062 0.96341 0.96653 1.02448 1.69682 1.38233 1.12685 1.35724 0.84910 0.78673 0.77282 0.77359 1.19517 1.19690 1.19772 1.22394 1.00386 0.93657 0.91001 1.21531 0.99493 0.89768 0.85254 0.91775 1.22507 0.99493 0.97019 0.95701 1.22884 1.03567 0.96070 0.94203 1.22654 0.89127 0.94040 0.95166 1.48488 1.37263 1.39485 1.07167 1.17729 0.82517 0.81294 0.81880 1.90802 1.27875 1.41839 1.83971 1.21742 0.96556 0.99581 0.94529 1.23724 0.98712 0.95532 0.87978 1.68690 1.10203 1.05899 1.32896 1.24935 0.90359 0.92689 0.99780 1.24742 1.00301 0.96672 0.88707 1.68608 1.06408 1.03450 1.34921 0.90796 0.91682 0.96503 0.87100 0.92370 0.77146 0.91365 0.89837 0.95380 0.90352 0.90287 0.87327 0.90439 0.87859 0.90404 0.81073 0.76513 0.75977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 9.04 127.69 1.15 2.27 16 2 N -0.52 -18.10 4.25 -927.05 -3.94 -22.04 16 3 C 0.06 2.14 5.44 85.56 0.47 2.61 16 4 C 0.45 21.78 7.50 87.65 0.66 22.44 16 5 O -0.61 -33.91 13.89 -3.07 -0.04 -33.95 16 6 N -0.57 -30.22 5.29 -306.98 -1.62 -31.84 16 7 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 10 N -0.92 -50.61 13.05 21.66 0.28 -50.33 16 11 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.05 1.58 4.37 86.30 0.38 1.96 16 16 C 0.14 3.62 2.89 45.34 0.13 3.75 16 17 H 0.06 1.84 6.54 -2.39 -0.02 1.83 16 18 C -0.11 -2.27 6.29 31.79 0.20 -2.07 16 19 C -0.13 -1.79 7.07 31.91 0.23 -1.56 16 20 C 0.11 1.70 5.72 86.78 0.50 2.20 16 21 N -0.59 -13.37 3.07 -791.50 -2.43 -15.79 16 22 C 0.58 14.91 7.56 86.88 0.66 15.56 16 23 O -0.57 -18.51 15.54 -3.77 -0.06 -18.57 16 24 C 0.01 0.29 6.71 41.89 0.28 0.57 16 25 C 0.10 1.90 10.77 84.95 0.92 2.81 16 26 N -0.46 -7.27 10.49 -194.12 -2.04 -9.30 16 27 C 0.08 0.61 11.23 84.77 0.95 1.56 16 28 C 0.06 0.38 11.22 84.82 0.95 1.33 16 29 N -0.42 -5.85 6.94 -184.33 -1.28 -7.12 16 30 H 0.07 2.41 6.50 -2.39 -0.02 2.40 16 31 H 0.06 2.80 5.87 -2.39 -0.01 2.79 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 3.61 7.86 -2.39 -0.02 3.59 16 34 H 0.06 2.07 8.12 -2.38 -0.02 2.05 16 35 H 0.39 19.85 7.90 -92.71 -0.73 19.12 16 36 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.08 2.23 7.70 -2.39 -0.02 2.21 16 38 H 0.03 0.92 6.82 -2.39 -0.02 0.91 16 39 H 0.08 1.70 7.77 -2.39 -0.02 1.68 16 40 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.39 6.30 -2.39 -0.02 1.37 16 44 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.17 3.44 7.65 -2.91 -0.02 3.42 16 46 H 0.22 -0.40 8.06 -2.91 -0.02 -0.42 16 47 H 0.22 -0.70 8.06 -2.91 -0.02 -0.72 16 Total: -1.00 -77.01 385.69 -0.07 -77.08 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.28 Total: 31.42 kcal Atomic # 6 Polarization: 26.14 SS G_CDS: 8.74 Total: 34.89 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -11.02 Total: -136.44 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.10 Total: -52.52 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -77.01 -0.07 -77.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733925483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.549 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds