Wall clock time and date at job start Wed Apr 1 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00082 * 2 1 4 4 O 1.21556 * 120.00031 * 175.73804 * 3 2 1 5 5 C 1.47834 * 119.99985 * 355.73162 * 3 2 1 6 6 C 1.39945 * 120.93432 * 30.08545 * 5 3 2 7 7 N 1.32152 * 118.91778 * 179.71344 * 6 5 3 8 8 C 1.31867 * 120.96658 * 0.57093 * 7 6 5 9 9 N 1.31866 * 122.09924 * 359.70133 * 8 7 6 10 10 C 1.32148 * 120.96576 * 359.97438 * 9 8 7 11 11 C 1.46507 * 119.99722 * 180.02562 * 2 1 3 12 12 H 1.09010 * 109.46696 * 181.48004 * 11 2 1 13 13 C 1.52996 * 109.47500 * 61.47894 * 11 2 1 14 14 N 1.46898 * 109.47361 * 54.99867 * 13 11 2 15 15 C 1.46893 * 111.00219 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47280 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00000 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00006 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99725 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00076 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99871 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99824 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00076 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46942 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46974 * 119.99478 * 23 21 19 26 26 H 1.48497 * 109.47135 * 239.99503 * 23 21 19 27 27 C 1.52996 * 109.46771 * 301.47363 * 11 2 1 28 28 C 1.53001 * 117.50108 * 250.96729 * 27 11 2 29 29 C 1.52997 * 117.49955 * 182.30477 * 27 11 2 30 30 H 1.09003 * 109.46819 * 264.55319 * 1 2 3 31 31 H 1.08999 * 109.47337 * 24.54636 * 1 2 3 32 32 H 1.08996 * 109.47591 * 144.55296 * 1 2 3 33 33 H 1.07992 * 120.54488 * 359.97438 * 6 5 3 34 34 H 1.08010 * 118.95147 * 179.72428 * 8 7 6 35 35 H 1.07999 * 120.53724 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47194 * 174.99895 * 13 11 2 37 37 H 1.09004 * 109.46871 * 294.99981 * 13 11 2 38 38 H 1.00907 * 110.99945 * 303.95705 * 14 13 11 39 39 H 1.09000 * 109.47055 * 299.99937 * 15 14 13 40 40 H 1.08994 * 109.47381 * 59.99963 * 15 14 13 41 41 H 0.97000 * 119.99628 * 359.97438 * 18 16 15 42 42 H 0.97001 * 120.00055 * 180.02562 * 22 21 19 43 43 H 1.08999 * 115.55398 * 36.63892 * 27 11 2 44 44 H 1.08998 * 117.50114 * 359.97438 * 28 27 11 45 45 H 1.09002 * 117.50182 * 145.02393 * 28 27 11 46 46 H 1.09001 * 117.50436 * 214.98326 * 29 27 11 47 47 H 1.09004 * 117.49750 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1686 0.0782 5 6 1.4028 2.4457 -0.0953 6 6 0.1075 2.5702 0.4198 7 7 -0.5116 3.7333 0.3180 8 6 0.0692 4.7621 -0.2677 9 7 1.2857 4.6869 -0.7712 10 6 1.9796 3.5641 -0.7077 11 6 2.1974 -1.2688 -0.0006 12 1 3.2689 -1.0698 0.0261 13 6 1.8560 -2.0544 -1.2683 14 7 2.1260 -1.2217 -2.4480 15 6 1.8084 -1.9447 -3.6866 16 6 2.0981 -1.0610 -4.8725 17 8 2.5265 0.0609 -4.7025 18 7 1.8802 -1.5171 -6.1219 19 6 2.1432 -0.7130 -7.2007 20 1 2.5246 0.2860 -7.0493 21 6 1.9190 -1.1833 -8.4889 22 7 1.4554 -2.3990 -8.6730 23 14 2.2767 -0.0875 -9.9587 24 1 2.7876 1.2241 -9.4856 25 1 3.2981 -0.7341 -10.8212 26 1 1.0294 0.1183 -10.7378 27 6 1.8001 -2.0875 1.2293 28 6 2.8396 -2.2416 2.3414 29 6 2.5005 -3.4314 1.4399 30 1 -0.3633 -0.0976 1.0231 31 1 -0.3634 0.9348 -0.4269 32 1 -0.3634 -0.8371 -0.5960 33 1 -0.3766 1.7308 0.8964 34 1 -0.4684 5.6964 -0.3369 35 1 2.9752 3.5101 -1.1228 36 1 2.4667 -2.9560 -1.3126 37 1 0.8015 -2.3301 -1.2519 38 1 1.6202 -0.3499 -2.3987 39 1 2.4186 -2.8459 -3.7478 40 1 0.7537 -2.2194 -3.6867 41 1 1.5372 -2.4142 -6.2578 42 1 1.2992 -2.7275 -9.5722 43 1 0.7537 -2.0136 1.5253 44 1 3.8067 -1.7601 2.1967 45 1 2.4770 -2.2695 3.3690 46 1 1.9150 -4.2415 1.8747 47 1 3.2441 -3.7324 0.7019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734298330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:08 Heat of formation + Delta-G solvation = 37.208266 kcal Electronic energy + Delta-G solvation = -30590.414401 eV Core-core repulsion = 26389.640749 eV Total energy + Delta-G solvation = -4200.773652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.62276 -40.07627 -38.32296 -37.87780 -35.92876 -35.00214 -33.99146 -33.77725 -32.56760 -31.23483 -29.69446 -27.65758 -26.57115 -25.22058 -24.74242 -24.17057 -22.93381 -22.15025 -21.10383 -19.76175 -19.21541 -18.36176 -17.90356 -17.87904 -17.21681 -16.83766 -16.41502 -15.85522 -15.47876 -15.05384 -14.97663 -14.56725 -14.48722 -14.32535 -14.12663 -13.94074 -13.87522 -13.58286 -13.38214 -13.22254 -12.66042 -12.30818 -12.20310 -11.97184 -11.88188 -11.74630 -11.61565 -11.51962 -11.25006 -11.07112 -11.04318 -10.75263 -10.34803 -10.32673 -10.22827 -10.10548 -9.84832 -9.58573 -9.52808 -8.99129 -8.45007 -8.08010 -7.96789 -6.42752 -3.83374 0.21306 0.73144 2.48859 2.63465 3.15872 3.26591 3.34183 3.47142 3.51848 3.73836 3.86766 3.89321 3.99114 4.11862 4.17200 4.24312 4.55035 4.59887 4.65603 4.70071 4.71799 4.90559 4.97037 5.02689 5.08342 5.14787 5.23606 5.25425 5.32741 5.39870 5.42068 5.56288 5.60709 5.69648 5.76258 5.88358 5.93760 5.97234 5.98414 6.23668 6.27523 6.53093 7.03784 7.15796 7.54774 7.59224 7.69235 7.89504 8.05692 8.60356 9.17303 9.53199 10.04782 10.75072 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.003092 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.382326 B = 9052.824131 C =11501.247194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.600 5.600 3 C 0.576 3.424 4 O -0.514 6.514 5 C -0.237 4.237 6 C 0.162 3.838 7 N -0.525 5.525 8 C 0.310 3.690 9 N -0.519 5.519 10 C 0.213 3.787 11 C 0.176 3.824 12 H 0.114 0.886 13 C 0.052 3.948 14 N -0.664 5.664 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.166 4.166 28 C -0.173 4.173 29 C -0.170 4.170 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.187 0.813 34 H 0.201 0.799 35 H 0.182 0.818 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.346 0.654 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 0.828 22.623 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.333 5.333 3 C 0.362 3.638 4 O -0.389 6.389 5 C -0.245 4.245 6 C -0.004 4.004 7 N -0.238 5.238 8 C 0.024 3.976 9 N -0.232 5.232 10 C 0.046 3.954 11 C 0.073 3.927 12 H 0.132 0.868 13 C -0.079 4.079 14 N -0.297 5.297 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.186 4.186 28 C -0.210 4.210 29 C -0.207 4.207 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.203 0.797 34 H 0.217 0.783 35 H 0.199 0.801 36 H 0.104 0.896 37 H 0.049 0.951 38 H 0.166 0.834 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.786 2.227 22.492 23.103 hybrid contribution -0.843 -1.002 -0.912 1.596 sum -5.629 1.225 21.579 22.335 Atomic orbital electron populations 1.22491 0.80283 1.04361 1.02039 1.47582 1.06571 1.05684 1.73419 1.17737 0.86892 0.82688 0.76458 1.90819 1.13035 1.86636 1.48444 1.21757 0.98113 0.97670 1.06915 1.24232 0.89576 0.95498 0.91081 1.68534 1.37685 1.00329 1.17300 1.25277 0.88313 0.97330 0.86729 1.68588 1.08760 1.27019 1.18824 1.23551 0.99059 0.85540 0.87204 1.20752 0.98677 0.81234 0.92079 0.86812 1.22276 0.99177 0.96711 0.89700 1.59996 1.63449 1.06556 0.99668 1.21679 0.98983 0.97496 0.89997 1.19805 0.85049 0.88656 0.83982 1.90535 1.49956 1.20714 1.85308 1.41861 1.57497 1.16386 1.04292 1.19755 1.40605 0.98686 0.83744 0.87896 1.25256 0.97150 0.96537 0.98988 1.69617 1.45368 1.16184 1.23175 0.85809 0.77980 0.80010 0.80625 1.19189 1.20699 1.20769 1.22527 0.98346 0.99912 0.97792 1.23032 1.00150 1.02325 0.95537 1.22959 1.03434 0.91166 1.03153 0.91464 0.89644 0.90416 0.79703 0.78256 0.80141 0.89609 0.95119 0.83409 0.89486 0.94049 0.77499 0.91934 0.87526 0.88381 0.88888 0.88564 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 7.84 59.85 0.47 0.83 16 2 N -0.60 -6.27 1.83 -175.05 -0.32 -6.59 16 3 C 0.58 7.53 7.48 -12.33 -0.09 7.44 16 4 O -0.51 -8.54 16.14 5.32 0.09 -8.46 16 5 C -0.24 -2.77 5.54 -104.69 -0.58 -3.35 16 6 C 0.16 1.54 8.76 -16.78 -0.15 1.39 16 7 N -0.52 -5.36 10.42 -14.25 -0.15 -5.50 16 8 C 0.31 3.12 12.27 -92.03 -1.13 1.99 16 9 N -0.52 -6.30 10.42 -14.24 -0.15 -6.45 16 10 C 0.21 2.69 10.90 -16.78 -0.18 2.50 16 11 C 0.18 1.88 2.55 -67.93 -0.17 1.70 16 12 H 0.11 1.54 6.68 -51.92 -0.35 1.19 16 13 C 0.05 0.60 4.79 -3.83 -0.02 0.58 16 14 N -0.66 -10.78 6.12 -115.07 -0.70 -11.48 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 16 C 0.44 10.48 7.82 -10.98 -0.09 10.40 16 17 O -0.58 -16.07 15.78 5.55 0.09 -15.99 16 18 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 23 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.17 -1.32 5.16 -90.62 -0.47 -1.79 16 28 C -0.17 -1.36 10.18 -26.69 -0.27 -1.63 16 29 C -0.17 -1.22 9.83 -26.69 -0.26 -1.49 16 30 H 0.07 0.30 7.30 -51.93 -0.38 -0.08 16 31 H 0.09 0.63 4.53 -51.93 -0.24 0.39 16 32 H 0.08 0.53 6.64 -51.93 -0.34 0.19 16 33 H 0.19 1.19 4.78 -52.49 -0.25 0.94 16 34 H 0.20 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.18 2.26 8.00 -52.49 -0.42 1.84 16 36 H 0.09 0.94 7.62 -51.93 -0.40 0.54 16 37 H 0.03 0.31 6.96 -51.93 -0.36 -0.05 16 38 H 0.35 5.99 7.57 -39.29 -0.30 5.69 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.11 0.72 7.28 -51.93 -0.38 0.34 16 44 H 0.10 0.88 8.06 -51.93 -0.42 0.46 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.75 7.81 -51.93 -0.41 0.35 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -35.07 391.60 -9.00 -44.07 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.18 Total: 15.15 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -3.21 Total: 11.41 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -0.66 Total: -68.28 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.44 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.07 -9.00 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734298330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.276 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds