Wall clock time and date at job start Wed Apr 1 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00082 * 2 1 4 4 O 1.21556 * 120.00031 * 175.73804 * 3 2 1 5 5 C 1.47834 * 119.99985 * 355.73162 * 3 2 1 6 6 C 1.39945 * 120.93432 * 30.08545 * 5 3 2 7 7 N 1.32152 * 118.91778 * 179.71344 * 6 5 3 8 8 C 1.31867 * 120.96658 * 0.57093 * 7 6 5 9 9 N 1.31866 * 122.09924 * 359.70133 * 8 7 6 10 10 C 1.32148 * 120.96576 * 359.97438 * 9 8 7 11 11 C 1.46507 * 119.99722 * 180.02562 * 2 1 3 12 12 H 1.09010 * 109.46696 * 181.48004 * 11 2 1 13 13 C 1.52996 * 109.47500 * 61.47894 * 11 2 1 14 14 N 1.46898 * 109.47361 * 54.99867 * 13 11 2 15 15 C 1.46893 * 111.00219 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47280 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00000 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00006 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99725 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00076 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99871 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99824 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00076 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46942 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46974 * 119.99478 * 23 21 19 26 26 H 1.48497 * 109.47135 * 239.99503 * 23 21 19 27 27 C 1.52996 * 109.46771 * 301.47363 * 11 2 1 28 28 C 1.53001 * 117.50108 * 250.96729 * 27 11 2 29 29 C 1.52997 * 117.49955 * 182.30477 * 27 11 2 30 30 H 1.09003 * 109.46819 * 264.55319 * 1 2 3 31 31 H 1.08999 * 109.47337 * 24.54636 * 1 2 3 32 32 H 1.08996 * 109.47591 * 144.55296 * 1 2 3 33 33 H 1.07992 * 120.54488 * 359.97438 * 6 5 3 34 34 H 1.08010 * 118.95147 * 179.72428 * 8 7 6 35 35 H 1.07999 * 120.53724 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47194 * 174.99895 * 13 11 2 37 37 H 1.09004 * 109.46871 * 294.99981 * 13 11 2 38 38 H 1.00907 * 110.99945 * 303.95705 * 14 13 11 39 39 H 1.09000 * 109.47055 * 299.99937 * 15 14 13 40 40 H 1.08994 * 109.47381 * 59.99963 * 15 14 13 41 41 H 0.97000 * 119.99628 * 359.97438 * 18 16 15 42 42 H 0.97001 * 120.00055 * 180.02562 * 22 21 19 43 43 H 1.08999 * 115.55398 * 36.63892 * 27 11 2 44 44 H 1.08998 * 117.50114 * 359.97438 * 28 27 11 45 45 H 1.09002 * 117.50182 * 145.02393 * 28 27 11 46 46 H 1.09001 * 117.50436 * 214.98326 * 29 27 11 47 47 H 1.09004 * 117.49750 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1686 0.0782 5 6 1.4028 2.4457 -0.0953 6 6 0.1075 2.5702 0.4198 7 7 -0.5116 3.7333 0.3180 8 6 0.0692 4.7621 -0.2677 9 7 1.2857 4.6869 -0.7712 10 6 1.9796 3.5641 -0.7077 11 6 2.1974 -1.2688 -0.0006 12 1 3.2689 -1.0698 0.0261 13 6 1.8560 -2.0544 -1.2683 14 7 2.1260 -1.2217 -2.4480 15 6 1.8084 -1.9447 -3.6866 16 6 2.0981 -1.0610 -4.8725 17 8 2.5265 0.0609 -4.7025 18 7 1.8802 -1.5171 -6.1219 19 6 2.1432 -0.7130 -7.2007 20 1 2.5246 0.2860 -7.0493 21 6 1.9190 -1.1833 -8.4889 22 7 1.4554 -2.3990 -8.6730 23 14 2.2767 -0.0875 -9.9587 24 1 2.7876 1.2241 -9.4856 25 1 3.2981 -0.7341 -10.8212 26 1 1.0294 0.1183 -10.7378 27 6 1.8001 -2.0875 1.2293 28 6 2.8396 -2.2416 2.3414 29 6 2.5005 -3.4314 1.4399 30 1 -0.3633 -0.0976 1.0231 31 1 -0.3634 0.9348 -0.4269 32 1 -0.3634 -0.8371 -0.5960 33 1 -0.3766 1.7308 0.8964 34 1 -0.4684 5.6964 -0.3369 35 1 2.9752 3.5101 -1.1228 36 1 2.4667 -2.9560 -1.3126 37 1 0.8015 -2.3301 -1.2519 38 1 1.6202 -0.3499 -2.3987 39 1 2.4186 -2.8459 -3.7478 40 1 0.7537 -2.2194 -3.6867 41 1 1.5372 -2.4142 -6.2578 42 1 1.2992 -2.7275 -9.5722 43 1 0.7537 -2.0136 1.5253 44 1 3.8067 -1.7601 2.1967 45 1 2.4770 -2.2695 3.3690 46 1 1.9150 -4.2415 1.8747 47 1 3.2441 -3.7324 0.7019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734298330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:05 Heat of formation + Delta-G solvation = 11.692096 kcal Electronic energy + Delta-G solvation = -30591.520865 eV Core-core repulsion = 26389.640749 eV Total energy + Delta-G solvation = -4201.880116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.47998 -40.97119 -40.12870 -38.79986 -36.84737 -36.26087 -35.73200 -34.80345 -33.48817 -33.26293 -30.73805 -28.48725 -27.97221 -26.39799 -25.62078 -25.57074 -23.79977 -22.90795 -21.91335 -21.17621 -20.46556 -19.93027 -19.21502 -18.68746 -18.16623 -17.82708 -17.66972 -17.20764 -16.60552 -16.49001 -16.05208 -15.79256 -15.70648 -15.44199 -15.20284 -15.05849 -14.96750 -14.74657 -14.50051 -14.24852 -13.94022 -13.57222 -13.39600 -13.08272 -13.00528 -12.90468 -12.79271 -12.77347 -12.44062 -12.36464 -12.14958 -12.06725 -11.90822 -11.54340 -11.39733 -11.05606 -10.94886 -10.75969 -10.44584 -10.40453 -10.03991 -9.79123 -9.30683 -8.49603 -5.98135 -0.63771 -0.13363 1.33926 1.39583 1.53565 1.55717 1.78423 2.02131 2.26692 2.63439 2.75011 3.00139 3.01660 3.05203 3.17632 3.28234 3.34773 3.44900 3.77160 3.83292 3.93469 4.03944 4.12281 4.13959 4.25630 4.29716 4.34386 4.38438 4.46886 4.54796 4.57109 4.59396 4.65264 4.79699 4.87145 4.88205 5.09044 5.14981 5.24969 5.31911 5.38455 5.47318 5.68404 5.85126 6.07362 6.16796 6.32106 6.57668 6.85559 6.95772 7.10343 7.53279 8.09439 8.67928 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.003092 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.382326 B = 9052.824131 C =11501.247194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.593 5.593 3 C 0.570 3.430 4 O -0.565 6.565 5 C -0.248 4.248 6 C 0.178 3.822 7 N -0.528 5.528 8 C 0.310 3.690 9 N -0.539 5.539 10 C 0.194 3.806 11 C 0.178 3.822 12 H 0.077 0.923 13 C 0.055 3.945 14 N -0.686 5.686 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.571 5.571 19 C -0.334 4.334 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.276 1.276 25 H -0.270 1.270 26 H -0.268 1.268 27 C -0.161 4.161 28 C -0.181 4.181 29 C -0.160 4.160 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.221 0.779 34 H 0.234 0.766 35 H 0.166 0.834 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.338 0.662 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.132 0.868 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -0.690 23.669 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.324 5.324 3 C 0.358 3.642 4 O -0.445 6.445 5 C -0.256 4.256 6 C 0.012 3.988 7 N -0.241 5.241 8 C 0.024 3.976 9 N -0.253 5.253 10 C 0.028 3.972 11 C 0.075 3.925 12 H 0.095 0.905 13 C -0.074 4.074 14 N -0.319 5.319 15 C -0.065 4.065 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.208 5.208 19 C -0.464 4.464 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.201 1.201 25 H -0.195 1.195 26 H -0.193 1.193 27 C -0.180 4.180 28 C -0.218 4.218 29 C -0.198 4.198 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.237 0.763 34 H 0.250 0.750 35 H 0.183 0.817 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.135 0.865 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.519 0.652 23.548 24.728 hybrid contribution -0.021 -0.538 -1.204 1.318 sum -7.540 0.114 22.345 23.583 Atomic orbital electron populations 1.22803 0.77806 1.04735 1.04658 1.47655 1.08072 1.04762 1.71887 1.18004 0.86452 0.83800 0.75981 1.90787 1.15177 1.87386 1.51104 1.21683 0.99201 0.96745 1.07951 1.24746 0.88317 0.96161 0.89597 1.68663 1.37504 1.00518 1.17404 1.25982 0.87644 0.98562 0.85437 1.68602 1.09859 1.26872 1.19939 1.23473 0.99054 0.86594 0.88121 1.20643 0.96939 0.81635 0.93297 0.90502 1.22374 1.01010 0.96207 0.87834 1.59968 1.64228 1.06977 1.00686 1.21535 1.01033 0.96285 0.87675 1.20964 0.83050 0.88752 0.85054 1.90508 1.51525 1.23104 1.86136 1.41907 1.57996 1.16366 1.04539 1.19661 1.42791 0.98441 0.85517 0.90721 1.25995 0.96314 0.97852 1.00845 1.69663 1.45017 1.16949 1.24236 0.84913 0.78417 0.77871 0.77397 1.20117 1.19502 1.19314 1.22465 0.99447 0.99856 0.96241 1.23039 0.99366 1.02944 0.96484 1.23032 1.03048 0.91229 1.02451 0.87625 0.89900 0.89322 0.76315 0.74991 0.81679 0.88790 0.92255 0.84389 0.87623 0.91075 0.76871 0.91219 0.85042 0.90536 0.87332 0.86487 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 7.84 127.77 1.00 1.45 16 2 N -0.59 -11.77 1.83 -826.01 -1.51 -13.29 16 3 C 0.57 15.47 7.48 86.78 0.65 16.11 16 4 O -0.57 -20.36 16.14 -3.89 -0.06 -20.42 16 5 C -0.25 -5.93 5.54 -19.91 -0.11 -6.04 16 6 C 0.18 3.08 8.76 85.06 0.75 3.83 16 7 N -0.53 -9.82 10.42 -198.98 -2.07 -11.89 16 8 C 0.31 5.93 12.27 180.84 2.22 8.15 16 9 N -0.54 -13.47 10.42 -198.98 -2.07 -15.54 16 10 C 0.19 5.25 10.90 85.06 0.93 6.18 16 11 C 0.18 3.64 2.55 44.99 0.11 3.76 16 12 H 0.08 2.19 6.68 -2.38 -0.02 2.17 16 13 C 0.05 1.16 4.79 86.30 0.41 1.57 16 14 N -0.69 -21.88 6.12 -517.96 -3.17 -25.05 16 15 C 0.07 2.26 6.17 85.56 0.53 2.79 16 16 C 0.43 21.02 7.82 87.66 0.69 21.71 16 17 O -0.63 -36.01 15.78 -3.07 -0.05 -36.06 16 18 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 19 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 20 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 22 N -0.92 -49.43 13.05 21.66 0.28 -49.14 16 23 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 C -0.16 -2.14 5.16 -10.80 -0.06 -2.19 16 28 C -0.18 -2.59 10.18 30.62 0.31 -2.28 16 29 C -0.16 -1.91 9.83 30.62 0.30 -1.61 16 30 H 0.11 0.41 7.30 -2.39 -0.02 0.39 16 31 H 0.08 0.99 4.53 -2.39 -0.01 0.98 16 32 H 0.09 0.85 6.64 -2.39 -0.02 0.83 16 33 H 0.22 2.07 4.78 -2.91 -0.01 2.05 16 34 H 0.23 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.17 4.78 8.00 -2.91 -0.02 4.75 16 36 H 0.09 1.84 7.62 -2.39 -0.02 1.82 16 37 H 0.06 0.95 6.96 -2.39 -0.02 0.93 16 38 H 0.34 11.70 7.57 -89.69 -0.68 11.02 16 39 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.13 1.15 7.28 -2.39 -0.02 1.13 16 44 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 45 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 47 H 0.09 1.25 7.81 -2.38 -0.02 1.23 16 Total: -1.00 -80.40 391.60 0.39 -80.01 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -0.37 Total: 42.17 kcal Atomic # 6 Polarization: 25.85 SS G_CDS: 9.01 Total: 34.87 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -10.17 Total: -146.05 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.11 Total: -56.48 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -80.40 0.39 -80.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734298330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.702 kcal (2) G-P(sol) polarization free energy of solvation -80.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds