Wall clock time and date at job start Wed Apr 1 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 119.99976 * 2 1 4 4 H 1.08002 * 120.00207 * 151.06611 * 3 2 1 5 5 C 1.38817 * 119.99845 * 330.79264 * 3 2 1 6 6 N 1.31616 * 119.99864 * 0.70195 * 5 3 2 7 7 Si 1.86796 * 119.99700 * 180.70061 * 5 3 2 8 8 H 1.48503 * 109.47415 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47083 * 120.00369 * 7 5 3 10 10 H 1.48505 * 109.47121 * 240.00111 * 7 5 3 11 11 C 1.46495 * 119.99915 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47347 * 270.00282 * 11 2 1 13 13 H 1.08997 * 109.46890 * 305.00488 * 12 11 2 14 14 O 1.42908 * 109.46796 * 64.99747 * 12 11 2 15 15 C 1.52999 * 109.47366 * 184.99867 * 12 11 2 16 16 N 1.46501 * 109.46986 * 179.97438 * 15 12 11 17 17 C 1.46496 * 119.99868 * 270.00077 * 16 15 12 18 18 C 1.34776 * 119.99436 * 90.00259 * 16 15 12 19 19 O 1.21553 * 120.00342 * 355.14718 * 18 16 15 20 20 C 1.47767 * 119.99346 * 175.14412 * 18 16 15 21 21 C 1.39633 * 121.07413 * 44.45750 * 20 18 16 22 22 C 1.38345 * 119.37962 * 179.97438 * 21 20 18 23 23 N 1.31730 * 121.53883 * 359.97281 * 22 21 20 24 24 C 1.32111 * 121.95229 * 0.02591 * 23 22 21 25 25 C 1.40822 * 120.46318 * 359.73763 * 24 23 22 26 26 N 1.34652 * 107.26044 * 180.31546 * 25 24 23 27 27 C 1.30277 * 109.67417 * 0.20962 * 26 25 24 28 28 N 1.36006 * 110.04988 * 359.55273 * 27 26 25 29 29 C 1.46497 * 126.35422 * 179.97438 * 28 27 26 30 30 H 1.09003 * 109.46774 * 92.90973 * 1 2 3 31 31 H 1.08997 * 109.47309 * 212.90598 * 1 2 3 32 32 H 1.09004 * 109.47577 * 332.91502 * 1 2 3 33 33 H 0.97006 * 119.99774 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47226 * 30.00025 * 11 2 1 35 35 H 1.08997 * 109.47160 * 150.00686 * 11 2 1 36 36 H 0.96698 * 113.99473 * 60.00699 * 14 12 11 37 37 H 1.08999 * 109.46906 * 300.00031 * 15 12 11 38 38 H 1.09002 * 109.46710 * 60.00321 * 15 12 11 39 39 H 1.08998 * 109.47215 * 95.22879 * 17 16 15 40 40 H 1.09006 * 109.46690 * 215.22618 * 17 16 15 41 41 H 1.09000 * 109.47577 * 335.22466 * 17 16 15 42 42 H 1.08003 * 120.31376 * 359.95191 * 21 20 18 43 43 H 1.07998 * 119.22819 * 179.97438 * 22 21 20 44 44 H 1.07995 * 124.97865 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.47051 * 270.67698 * 29 28 27 46 46 H 1.09006 * 109.47400 * 30.67261 * 29 28 27 47 47 H 1.08997 * 109.46999 * 150.67686 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1286 1.2443 0.4525 5 6 1.5879 2.3116 -0.5866 6 7 0.3914 2.2426 -1.1306 7 14 2.5302 3.9244 -0.6039 8 1 3.8421 3.7385 0.0667 9 1 2.7492 4.3548 -2.0083 10 1 1.7486 4.9621 0.1156 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4433 13 1 2.9641 -0.9123 1.9820 14 8 1.2058 -1.9926 2.0822 15 6 3.3237 -2.9675 1.4457 16 7 3.5683 -3.3895 2.8271 17 6 4.7330 -2.8782 3.5538 18 6 2.7217 -4.2480 3.4293 19 8 1.7088 -4.6035 2.8589 20 6 3.0249 -4.7572 4.7829 21 6 3.4775 -3.9023 5.7899 22 6 3.7503 -4.4164 7.0449 23 7 3.5927 -5.6962 7.3145 24 6 3.1678 -6.5550 6.4050 25 6 2.8607 -6.1206 5.1012 26 7 2.4521 -7.1993 4.4065 27 6 2.4792 -8.2515 5.1742 28 7 2.9196 -7.9119 6.4154 29 6 3.0871 -8.8168 7.5552 30 1 -0.3633 -0.0522 -1.0264 31 1 -0.3634 -0.8628 0.5583 32 1 -0.3634 0.9150 0.4679 33 1 -0.0010 3.0291 -1.5409 34 1 1.6084 -2.0286 -0.5129 35 1 3.1499 -1.1386 -0.5132 36 1 0.6954 -2.6942 1.6553 37 1 2.8119 -3.7650 0.9070 38 1 4.2745 -2.7517 0.9583 39 1 4.4392 -2.0134 4.1487 40 1 5.1214 -3.6563 4.2111 41 1 5.5050 -2.5847 2.8426 42 1 3.6137 -2.8495 5.5908 43 1 4.1007 -3.7530 7.8218 44 1 2.2000 -9.2488 4.8679 45 1 2.1576 -8.8622 8.1227 46 1 3.3411 -9.8134 7.1937 47 1 3.8872 -8.4483 8.1971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734542068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:24 Heat of formation + Delta-G solvation = 53.229734 kcal Electronic energy + Delta-G solvation = -30684.088486 eV Core-core repulsion = 26484.009577 eV Total energy + Delta-G solvation = -4200.078909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.72959 -40.01144 -38.45341 -37.11857 -35.32074 -34.83389 -34.44802 -32.37960 -31.25041 -30.08395 -29.51723 -27.62315 -26.98457 -26.11256 -25.61326 -24.33410 -23.22028 -22.42296 -21.28875 -20.47385 -19.34911 -18.33097 -17.78765 -17.07854 -16.80914 -16.52239 -16.16971 -15.79617 -15.57464 -15.01268 -14.83880 -14.62685 -14.42487 -14.18365 -14.01669 -13.62542 -13.46678 -13.37407 -13.19443 -13.09661 -12.81609 -12.70183 -12.48708 -12.24314 -11.72694 -11.45636 -11.13496 -11.06498 -10.97896 -10.85410 -10.62345 -10.44861 -10.17608 -10.07738 -9.94696 -9.87581 -9.56300 -9.33689 -9.00174 -8.81532 -8.51710 -8.32275 -6.50893 -5.66970 -3.16563 0.22730 0.87141 1.93641 2.44803 2.82415 2.95989 3.40239 3.46223 3.48543 3.55450 3.70472 3.94090 4.15089 4.33766 4.52244 4.53557 4.64569 4.67222 4.83773 4.95988 5.01530 5.03116 5.14292 5.24168 5.37065 5.49028 5.51279 5.54632 5.61696 5.62785 5.77698 5.81961 5.95775 6.09507 6.18056 6.23906 6.53402 6.57643 6.68773 6.84648 7.09485 7.38253 7.44885 7.49104 7.60567 7.82137 7.93305 8.24752 8.46806 8.53296 9.33588 9.94800 10.47778 11.38262 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.002244 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.145384 B =12477.035180 C =13024.210674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.594 5.594 3 C -0.253 4.253 4 H 0.064 0.936 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.126 3.874 12 C 0.071 3.929 13 H 0.092 0.908 14 O -0.547 6.547 15 C 0.084 3.916 16 N -0.602 5.602 17 C 0.073 3.927 18 C 0.566 3.434 19 O -0.504 6.504 20 C -0.021 4.021 21 C -0.155 4.155 22 C 0.134 3.866 23 N -0.472 5.472 24 C 0.233 3.767 25 C 0.046 3.954 26 N -0.472 5.472 27 C 0.273 3.727 28 N -0.487 5.487 29 C 0.083 3.917 30 H 0.011 0.989 31 H -0.001 1.001 32 H 0.055 0.945 33 H 0.251 0.749 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.367 0.633 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.224 0.776 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -22.437 17.860 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.316 5.316 3 C -0.383 4.383 4 H 0.082 0.918 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.217 1.217 11 C -0.004 4.004 12 C 0.007 3.993 13 H 0.110 0.890 14 O -0.352 6.352 15 C -0.039 4.039 16 N -0.335 5.335 17 C -0.070 4.070 18 C 0.352 3.648 19 O -0.378 6.378 20 C -0.034 4.034 21 C -0.177 4.177 22 C -0.032 4.032 23 N -0.185 5.185 24 C -0.003 4.003 25 C -0.077 4.077 26 N -0.190 5.190 27 C -0.012 4.012 28 N -0.179 5.179 29 C -0.059 4.059 30 H 0.030 0.970 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.214 0.786 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.173 0.827 43 H 0.190 0.810 44 H 0.240 0.760 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.872 -22.447 17.909 30.365 hybrid contribution 0.440 0.776 -0.270 0.933 sum 10.312 -21.671 17.639 29.784 Atomic orbital electron populations 1.20778 0.82390 0.97385 0.97117 1.43685 1.01962 1.00057 1.85882 1.19170 1.01373 0.87425 1.30361 0.91847 1.25223 0.97122 0.98956 0.98129 1.70075 1.15200 1.28502 1.41363 0.86191 0.79336 0.83827 0.77240 1.20353 1.21656 1.21721 1.21317 0.96773 0.89616 0.92646 1.23228 0.84476 0.93864 0.97695 0.89007 1.86544 1.32249 1.59560 1.56815 1.22452 1.01353 0.99059 0.81037 1.47594 1.26031 1.45202 1.14683 1.22047 0.88018 0.99261 0.97680 1.17798 0.83553 0.78742 0.84685 1.90774 1.24845 1.57807 1.64406 1.19603 0.97847 0.90478 0.95470 1.22410 1.00278 1.01547 0.93516 1.22519 0.95865 0.89240 0.95614 1.66157 1.14654 1.03275 1.34462 1.18892 1.02989 0.85926 0.92461 1.19167 1.03537 0.93413 0.91618 1.70254 1.20265 0.97138 1.31327 1.25635 0.96165 1.00403 0.79030 1.45103 1.54453 1.05465 1.12925 1.22025 1.03844 0.92862 0.87180 0.97028 0.98303 0.92621 0.93819 0.94257 0.92901 0.78644 0.89876 0.89818 0.92021 0.91331 0.90601 0.82733 0.81029 0.75986 0.90521 0.89139 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.44 8.81 59.85 0.53 4.97 16 2 N -0.59 -15.47 2.88 -181.12 -0.52 -16.00 16 3 C -0.25 -7.09 9.62 -15.06 -0.14 -7.24 16 4 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 5 C 0.00 0.11 5.29 -17.43 -0.09 0.02 16 6 N -0.91 -27.22 10.49 55.49 0.58 -26.64 16 7 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 C 0.13 2.60 5.34 -4.04 -0.02 2.57 16 12 C 0.07 1.28 3.48 -26.73 -0.09 1.19 16 13 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 14 O -0.55 -11.09 10.82 -48.83 -0.53 -11.62 16 15 C 0.08 1.22 5.18 -4.04 -0.02 1.20 16 16 N -0.60 -8.29 2.83 -182.73 -0.52 -8.81 16 17 C 0.07 0.71 9.04 59.84 0.54 1.25 16 18 C 0.57 9.07 6.92 -12.37 -0.09 8.99 16 19 O -0.50 -9.82 15.11 -8.28 -0.13 -9.94 16 20 C -0.02 -0.29 5.09 -104.45 -0.53 -0.82 16 21 C -0.15 -1.60 7.78 -39.02 -0.30 -1.90 16 22 C 0.13 1.21 11.14 -17.56 -0.20 1.01 16 23 N -0.47 -5.22 10.35 -12.30 -0.13 -5.35 16 24 C 0.23 2.78 8.02 -155.65 -1.25 1.53 16 25 C 0.05 0.65 6.93 -84.62 -0.59 0.06 16 26 N -0.47 -6.54 11.23 -11.88 -0.13 -6.68 16 27 C 0.27 2.40 12.50 -89.67 -1.12 1.28 16 28 N -0.49 -4.20 3.20 -124.98 -0.40 -4.60 16 29 C 0.08 0.33 11.20 59.85 0.67 1.00 16 30 H 0.01 0.32 7.75 -51.93 -0.40 -0.08 16 31 H 0.00 -0.04 7.06 -51.93 -0.37 -0.40 16 32 H 0.06 1.61 6.83 -51.93 -0.35 1.25 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 36 H 0.37 7.06 8.31 45.56 0.38 7.44 16 37 H 0.08 1.27 7.49 -51.93 -0.39 0.88 16 38 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 39 H 0.06 0.55 6.98 -51.93 -0.36 0.19 16 40 H 0.07 0.58 6.10 -51.93 -0.32 0.27 16 41 H 0.08 0.63 7.83 -51.93 -0.41 0.22 16 42 H 0.16 1.31 5.93 -52.48 -0.31 1.00 16 43 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -39.42 387.20 -9.53 -48.94 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.86 Total: 2.64 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: -2.71 Total: 15.12 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -1.12 Total: -68.07 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.65 Total: -21.56 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.42 -9.53 -48.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734542068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.174 kcal (2) G-P(sol) polarization free energy of solvation -39.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds