Wall clock time and date at job start Wed Apr 1 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36929 * 120.00262 * 2 1 4 4 H 1.08001 * 120.00672 * 207.54675 * 3 2 1 5 5 C 1.38818 * 120.00226 * 27.54412 * 3 2 1 6 6 N 1.31620 * 119.99619 * 8.40342 * 5 3 2 7 7 Si 1.86797 * 120.00370 * 188.40743 * 5 3 2 8 8 H 1.48493 * 109.47252 * 89.99747 * 7 5 3 9 9 H 1.48502 * 109.46945 * 210.00048 * 7 5 3 10 10 H 1.48501 * 109.46960 * 329.99923 * 7 5 3 11 11 C 1.46502 * 119.99621 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47074 * 90.00206 * 11 2 1 13 13 H 1.09011 * 109.46999 * 59.99849 * 12 11 2 14 14 O 1.42892 * 109.47213 * 299.99632 * 12 11 2 15 15 C 1.52998 * 109.47208 * 179.97438 * 12 11 2 16 16 N 1.46500 * 109.47525 * 184.99969 * 15 12 11 17 17 C 1.46497 * 120.00064 * 270.00808 * 16 15 12 18 18 C 1.34776 * 120.00329 * 89.99812 * 16 15 12 19 19 O 1.21569 * 119.99806 * 355.80085 * 18 16 15 20 20 C 1.47759 * 120.00317 * 175.79921 * 18 16 15 21 21 C 1.39636 * 121.07510 * 45.62203 * 20 18 16 22 22 C 1.38337 * 119.37705 * 179.97438 * 21 20 18 23 23 N 1.31719 * 121.54845 * 359.97182 * 22 21 20 24 24 C 1.32119 * 121.95016 * 0.02562 * 23 22 21 25 25 C 1.40829 * 120.45810 * 359.74570 * 24 23 22 26 26 N 1.34659 * 107.26158 * 180.31577 * 25 24 23 27 27 C 1.30278 * 109.66468 * 0.20014 * 26 25 24 28 28 N 1.35995 * 110.05977 * 359.55855 * 27 26 25 29 29 C 1.46500 * 126.35571 * 179.97438 * 28 27 26 30 30 H 1.09006 * 109.47327 * 265.71600 * 1 2 3 31 31 H 1.08997 * 109.47582 * 25.71317 * 1 2 3 32 32 H 1.09004 * 109.47551 * 145.71685 * 1 2 3 33 33 H 0.96997 * 119.99997 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47865 * 329.99925 * 11 2 1 35 35 H 1.09008 * 109.46692 * 209.99603 * 11 2 1 36 36 H 0.96696 * 114.00602 * 300.00113 * 14 12 11 37 37 H 1.09001 * 109.47328 * 305.00123 * 15 12 11 38 38 H 1.09004 * 109.46991 * 65.00280 * 15 12 11 39 39 H 1.08999 * 109.47959 * 94.96322 * 17 16 15 40 40 H 1.09004 * 109.47450 * 214.96525 * 17 16 15 41 41 H 1.09001 * 109.47271 * 334.96059 * 17 16 15 42 42 H 1.08003 * 120.30827 * 359.95338 * 21 20 18 43 43 H 1.08003 * 119.22415 * 180.02562 * 22 21 20 44 44 H 1.08004 * 124.97126 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47218 * 270.66983 * 29 28 27 46 46 H 1.08993 * 109.47237 * 30.67657 * 29 28 27 47 47 H 1.09005 * 109.46923 * 150.67991 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1378 1.2389 -0.4325 5 6 1.5736 2.3199 0.5559 6 7 0.4460 2.2233 1.2279 7 14 2.3987 3.9831 0.3503 8 1 1.8956 4.6360 -0.8849 9 1 2.0881 4.8383 1.5239 10 1 3.8686 3.7973 0.2483 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4417 13 1 3.0415 -0.9516 -1.9559 14 8 1.2038 -1.8822 -2.1153 15 6 3.2178 -3.0358 -1.4412 16 7 3.5663 -3.3992 -2.8169 17 6 2.6461 -4.2131 -3.6150 18 6 4.7333 -2.9845 -3.3485 19 8 5.4618 -2.2462 -2.7144 20 6 5.1273 -3.4273 -4.7020 21 6 4.2172 -3.4060 -5.7608 22 6 4.6239 -3.8279 -7.0139 23 7 5.8521 -4.2500 -7.2340 24 6 6.7589 -4.2938 -6.2741 25 6 6.4359 -3.8791 -4.9676 26 7 7.5436 -4.0269 -4.2162 27 6 8.5135 -4.4912 -4.9517 28 7 8.0821 -4.6804 -6.2274 29 6 8.8786 -5.1884 -7.3472 30 1 -0.3634 -0.0768 1.0248 31 1 -0.3634 0.9259 -0.4458 32 1 -0.3634 -0.8491 -0.5789 33 1 0.0433 3.0158 1.6160 34 1 1.6083 -2.0282 0.5147 35 1 3.1499 -1.1382 0.5143 36 1 0.6266 -2.5447 -1.7116 37 1 4.1285 -2.9290 -0.8519 38 1 2.5932 -3.8162 -1.0064 39 1 2.0174 -3.5615 -4.2219 40 1 3.2174 -4.8753 -4.2656 41 1 2.0186 -4.8083 -2.9516 42 1 3.2051 -3.0636 -5.6027 43 1 3.9180 -3.8101 -7.8311 44 1 9.5119 -4.7027 -4.5981 45 1 9.3650 -4.3553 -7.8545 46 1 9.6353 -5.8771 -6.9718 47 1 8.2277 -5.7106 -8.0485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734542069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:28 Heat of formation + Delta-G solvation = 52.723237 kcal Electronic energy + Delta-G solvation = -30641.102453 eV Core-core repulsion = 26441.001581 eV Total energy + Delta-G solvation = -4200.100872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.72966 -40.02915 -38.45910 -37.32815 -35.31176 -34.83216 -34.45748 -32.42313 -31.26461 -30.08627 -29.62152 -27.61440 -26.90290 -26.17822 -25.59408 -24.33452 -23.22785 -22.44904 -21.37316 -20.52844 -19.35927 -18.31532 -17.78345 -17.13100 -16.72354 -16.53638 -16.13660 -15.83152 -15.67657 -15.13781 -14.75269 -14.67396 -14.44877 -14.21589 -14.03717 -13.63634 -13.46815 -13.40903 -13.18764 -13.01949 -12.81232 -12.77741 -12.54687 -12.29820 -11.79319 -11.42171 -11.13562 -11.06159 -10.98591 -10.82527 -10.60881 -10.45413 -10.29113 -10.13986 -9.95284 -9.83146 -9.67623 -9.35789 -9.00596 -8.81790 -8.54474 -8.30605 -6.52360 -5.64552 -3.12525 0.22345 0.86950 1.93774 2.44813 2.77049 2.94328 3.46196 3.51566 3.54239 3.54974 3.70559 3.94389 4.15081 4.33148 4.52543 4.58182 4.64830 4.67723 4.84243 4.94557 4.97124 5.03377 5.07841 5.21935 5.35644 5.43546 5.52516 5.54979 5.56154 5.68090 5.76398 5.90627 5.99039 6.03164 6.11132 6.23847 6.53636 6.56175 6.71710 6.85775 6.97739 7.35320 7.44745 7.48930 7.51351 7.79648 7.92269 8.19951 8.24875 8.54187 9.35310 9.96543 10.47500 11.41387 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.002439 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.999511 B =11477.294254 C =12174.444912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.591 5.591 3 C -0.252 4.252 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.126 3.874 12 C 0.071 3.929 13 H 0.098 0.902 14 O -0.549 6.549 15 C 0.086 3.914 16 N -0.600 5.600 17 C 0.079 3.921 18 C 0.557 3.443 19 O -0.506 6.506 20 C -0.022 4.022 21 C -0.154 4.154 22 C 0.134 3.866 23 N -0.472 5.472 24 C 0.233 3.767 25 C 0.046 3.954 26 N -0.473 5.473 27 C 0.274 3.726 28 N -0.486 5.486 29 C 0.083 3.917 30 H 0.012 0.988 31 H 0.051 0.949 32 H -0.002 1.002 33 H 0.252 0.748 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.357 0.643 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.156 0.844 43 H 0.173 0.827 44 H 0.224 0.776 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.166 -21.856 -18.077 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.313 5.313 3 C -0.382 4.382 4 H 0.082 0.918 5 C -0.195 4.195 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C -0.003 4.003 12 C 0.008 3.992 13 H 0.116 0.884 14 O -0.352 6.352 15 C -0.037 4.037 16 N -0.333 5.333 17 C -0.064 4.064 18 C 0.344 3.656 19 O -0.380 6.380 20 C -0.035 4.035 21 C -0.176 4.176 22 C -0.032 4.032 23 N -0.185 5.185 24 C -0.002 4.002 25 C -0.077 4.077 26 N -0.190 5.190 27 C -0.011 4.011 28 N -0.179 5.179 29 C -0.059 4.059 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.202 0.798 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.173 0.827 43 H 0.190 0.810 44 H 0.241 0.759 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.127 -20.986 -18.055 30.224 hybrid contribution 0.001 0.585 0.139 0.602 sum 12.129 -20.401 -17.916 29.737 Atomic orbital electron populations 1.20723 0.82561 0.97399 0.96916 1.43653 1.01801 1.00146 1.85655 1.19193 1.00807 0.86739 1.31430 0.91767 1.25105 0.97892 0.98805 0.97707 1.70048 1.19769 1.27939 1.37683 0.86251 0.79181 0.84088 0.77057 1.21502 1.21728 1.20369 1.21288 0.97022 0.89518 0.92494 1.23278 0.84117 0.94344 0.97499 0.88429 1.86628 1.29142 1.63256 1.56202 1.22416 1.01494 0.98323 0.81441 1.47623 1.18334 1.52588 1.14789 1.21991 0.93329 0.94768 0.96299 1.17963 0.81226 0.81185 0.85274 1.90863 1.51885 1.34396 1.60809 1.19573 0.90854 0.97862 0.95189 1.22391 1.01018 1.01305 0.92929 1.22514 0.90458 0.94064 0.96187 1.66159 1.01650 1.16865 1.33813 1.18889 0.87005 1.02227 0.92113 1.19172 0.93728 1.03661 0.91177 1.70267 0.98444 1.18588 1.31746 1.25642 1.00411 0.96555 0.78535 1.45105 1.07897 1.53501 1.11427 1.22026 0.95727 1.00280 0.87871 0.96948 0.92974 0.98324 0.93838 0.94440 0.92557 0.79781 0.89104 0.90428 0.91553 0.91711 0.90930 0.82665 0.80991 0.75948 0.90514 0.89131 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.28 8.77 59.84 0.52 4.81 16 2 N -0.59 -15.43 2.83 -181.12 -0.51 -15.94 16 3 C -0.25 -7.32 9.62 -15.06 -0.14 -7.47 16 4 H 0.06 1.88 7.84 -52.49 -0.41 1.47 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.91 -27.54 10.80 55.49 0.60 -26.94 16 7 Si 0.90 23.07 29.56 -169.99 -5.03 18.05 16 8 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 9 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.13 2.61 5.38 -4.04 -0.02 2.59 16 12 C 0.07 1.28 3.48 -26.73 -0.09 1.19 16 13 H 0.10 2.19 8.14 -51.92 -0.42 1.76 16 14 O -0.55 -9.38 11.55 -35.23 -0.41 -9.79 16 15 C 0.09 1.25 5.07 -4.04 -0.02 1.23 16 16 N -0.60 -8.31 2.84 -182.73 -0.52 -8.83 16 17 C 0.08 0.75 8.67 59.85 0.52 1.27 16 18 C 0.56 9.27 7.32 -12.37 -0.09 9.18 16 19 O -0.51 -10.64 16.64 5.31 0.09 -10.55 16 20 C -0.02 -0.31 5.04 -104.45 -0.53 -0.83 16 21 C -0.15 -1.60 7.81 -39.02 -0.30 -1.90 16 22 C 0.13 1.22 11.14 -17.56 -0.20 1.02 16 23 N -0.47 -5.25 10.35 -12.30 -0.13 -5.38 16 24 C 0.23 2.83 8.02 -155.64 -1.25 1.58 16 25 C 0.05 0.66 6.94 -84.61 -0.59 0.08 16 26 N -0.47 -6.76 11.23 -11.88 -0.13 -6.90 16 27 C 0.27 2.50 12.50 -89.68 -1.12 1.37 16 28 N -0.49 -4.31 3.20 -124.98 -0.40 -4.71 16 29 C 0.08 0.34 11.20 59.85 0.67 1.01 16 30 H 0.01 0.33 7.79 -51.93 -0.40 -0.07 16 31 H 0.05 1.46 6.89 -51.93 -0.36 1.10 16 32 H 0.00 -0.04 6.81 -51.93 -0.35 -0.39 16 33 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.06 1.21 8.04 -51.92 -0.42 0.79 16 36 H 0.36 4.74 8.81 45.56 0.40 5.14 16 37 H 0.09 1.46 7.48 -51.93 -0.39 1.07 16 38 H 0.08 0.88 7.86 -51.93 -0.41 0.48 16 39 H 0.07 0.60 7.01 -51.93 -0.36 0.24 16 40 H 0.06 0.55 6.17 -51.93 -0.32 0.23 16 41 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 42 H 0.16 1.32 6.07 -52.48 -0.32 1.00 16 43 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.22 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 47 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -40.74 390.10 -9.13 -49.87 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.84 Total: 0.11 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -2.73 Total: 15.13 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -1.09 Total: -68.69 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.32 Total: -20.34 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.74 -9.13 -49.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734542069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.591 kcal (2) G-P(sol) polarization free energy of solvation -40.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds