Wall clock time and date at job start Wed Apr 1 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36929 * 120.00262 * 2 1 4 4 H 1.08001 * 120.00672 * 207.54675 * 3 2 1 5 5 C 1.38818 * 120.00226 * 27.54412 * 3 2 1 6 6 N 1.31620 * 119.99619 * 8.40342 * 5 3 2 7 7 Si 1.86797 * 120.00370 * 188.40743 * 5 3 2 8 8 H 1.48493 * 109.47252 * 89.99747 * 7 5 3 9 9 H 1.48502 * 109.46945 * 210.00048 * 7 5 3 10 10 H 1.48501 * 109.46960 * 329.99923 * 7 5 3 11 11 C 1.46502 * 119.99621 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47074 * 90.00206 * 11 2 1 13 13 H 1.09011 * 109.46999 * 59.99849 * 12 11 2 14 14 O 1.42892 * 109.47213 * 299.99632 * 12 11 2 15 15 C 1.52998 * 109.47208 * 179.97438 * 12 11 2 16 16 N 1.46500 * 109.47525 * 184.99969 * 15 12 11 17 17 C 1.46497 * 120.00064 * 270.00808 * 16 15 12 18 18 C 1.34776 * 120.00329 * 89.99812 * 16 15 12 19 19 O 1.21569 * 119.99806 * 355.80085 * 18 16 15 20 20 C 1.47759 * 120.00317 * 175.79921 * 18 16 15 21 21 C 1.39636 * 121.07510 * 45.62203 * 20 18 16 22 22 C 1.38337 * 119.37705 * 179.97438 * 21 20 18 23 23 N 1.31719 * 121.54845 * 359.97182 * 22 21 20 24 24 C 1.32119 * 121.95016 * 0.02562 * 23 22 21 25 25 C 1.40829 * 120.45810 * 359.74570 * 24 23 22 26 26 N 1.34659 * 107.26158 * 180.31577 * 25 24 23 27 27 C 1.30278 * 109.66468 * 0.20014 * 26 25 24 28 28 N 1.35995 * 110.05977 * 359.55855 * 27 26 25 29 29 C 1.46500 * 126.35571 * 179.97438 * 28 27 26 30 30 H 1.09006 * 109.47327 * 265.71600 * 1 2 3 31 31 H 1.08997 * 109.47582 * 25.71317 * 1 2 3 32 32 H 1.09004 * 109.47551 * 145.71685 * 1 2 3 33 33 H 0.96997 * 119.99997 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47865 * 329.99925 * 11 2 1 35 35 H 1.09008 * 109.46692 * 209.99603 * 11 2 1 36 36 H 0.96696 * 114.00602 * 300.00113 * 14 12 11 37 37 H 1.09001 * 109.47328 * 305.00123 * 15 12 11 38 38 H 1.09004 * 109.46991 * 65.00280 * 15 12 11 39 39 H 1.08999 * 109.47959 * 94.96322 * 17 16 15 40 40 H 1.09004 * 109.47450 * 214.96525 * 17 16 15 41 41 H 1.09001 * 109.47271 * 334.96059 * 17 16 15 42 42 H 1.08003 * 120.30827 * 359.95338 * 21 20 18 43 43 H 1.08003 * 119.22415 * 180.02562 * 22 21 20 44 44 H 1.08004 * 124.97126 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47218 * 270.66983 * 29 28 27 46 46 H 1.08993 * 109.47237 * 30.67657 * 29 28 27 47 47 H 1.09005 * 109.46923 * 150.67991 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1378 1.2389 -0.4325 5 6 1.5736 2.3199 0.5559 6 7 0.4460 2.2233 1.2279 7 14 2.3987 3.9831 0.3503 8 1 1.8956 4.6360 -0.8849 9 1 2.0881 4.8383 1.5239 10 1 3.8686 3.7973 0.2483 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4417 13 1 3.0415 -0.9516 -1.9559 14 8 1.2038 -1.8822 -2.1153 15 6 3.2178 -3.0358 -1.4412 16 7 3.5663 -3.3992 -2.8169 17 6 2.6461 -4.2131 -3.6150 18 6 4.7333 -2.9845 -3.3485 19 8 5.4618 -2.2462 -2.7144 20 6 5.1273 -3.4273 -4.7020 21 6 4.2172 -3.4060 -5.7608 22 6 4.6239 -3.8279 -7.0139 23 7 5.8521 -4.2500 -7.2340 24 6 6.7589 -4.2938 -6.2741 25 6 6.4359 -3.8791 -4.9676 26 7 7.5436 -4.0269 -4.2162 27 6 8.5135 -4.4912 -4.9517 28 7 8.0821 -4.6804 -6.2274 29 6 8.8786 -5.1884 -7.3472 30 1 -0.3634 -0.0768 1.0248 31 1 -0.3634 0.9259 -0.4458 32 1 -0.3634 -0.8491 -0.5789 33 1 0.0433 3.0158 1.6160 34 1 1.6083 -2.0282 0.5147 35 1 3.1499 -1.1382 0.5143 36 1 0.6266 -2.5447 -1.7116 37 1 4.1285 -2.9290 -0.8519 38 1 2.5932 -3.8162 -1.0064 39 1 2.0174 -3.5615 -4.2219 40 1 3.2174 -4.8753 -4.2656 41 1 2.0186 -4.8083 -2.9516 42 1 3.2051 -3.0636 -5.6027 43 1 3.9180 -3.8101 -7.8311 44 1 9.5119 -4.7027 -4.5981 45 1 9.3650 -4.3553 -7.8545 46 1 9.6353 -5.8771 -6.9718 47 1 8.2277 -5.7106 -8.0485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734542069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:27 Heat of formation + Delta-G solvation = 22.224375 kcal Electronic energy + Delta-G solvation = -30642.424983 eV Core-core repulsion = 26441.001581 eV Total energy + Delta-G solvation = -4201.423402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.49590 -41.15659 -39.35662 -38.80248 -36.86903 -36.03980 -35.53771 -33.42537 -33.15783 -31.11097 -30.86163 -28.21719 -28.02519 -27.76530 -27.34509 -25.36550 -24.04684 -23.84880 -22.52769 -22.23942 -20.31498 -19.16372 -18.79819 -18.55432 -18.01880 -17.60118 -17.28662 -16.92759 -16.79203 -16.63383 -16.27028 -15.92129 -15.56619 -15.37798 -14.93861 -14.91910 -14.74252 -14.47137 -14.43549 -14.18941 -13.74682 -13.60578 -13.50226 -13.38213 -13.17087 -13.01625 -12.85105 -12.65253 -12.50870 -12.22214 -12.08632 -11.99992 -11.91720 -11.82766 -11.76369 -11.34634 -11.21420 -10.62831 -10.26420 -9.78845 -9.70167 -9.58121 -8.61331 -7.86252 -5.36695 -0.62587 0.07712 1.31277 1.40964 1.41919 1.51669 1.55214 1.78034 1.89057 2.47534 2.67939 2.98520 3.26222 3.28450 3.39261 3.56123 3.62404 3.74378 3.89716 4.02300 4.06927 4.16749 4.21414 4.29290 4.33527 4.42681 4.49955 4.54248 4.69403 4.71199 4.73630 4.80023 4.84481 4.95863 4.97613 5.02243 5.06429 5.24549 5.42017 5.48823 5.51222 5.58885 5.72135 5.92266 6.26211 6.34903 6.69146 6.71521 7.02678 7.05927 7.15945 7.88016 8.30555 9.16454 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.002439 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.999511 B =11477.294254 C =12174.444912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.051 0.949 5 C -0.048 4.048 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.285 1.285 9 H -0.286 1.286 10 H -0.276 1.276 11 C 0.123 3.877 12 C 0.096 3.904 13 H 0.046 0.954 14 O -0.556 6.556 15 C 0.095 3.905 16 N -0.596 5.596 17 C 0.073 3.927 18 C 0.550 3.450 19 O -0.569 6.569 20 C -0.056 4.056 21 C -0.139 4.139 22 C 0.139 3.861 23 N -0.475 5.475 24 C 0.218 3.782 25 C 0.014 3.986 26 N -0.538 5.538 27 C 0.290 3.710 28 N -0.481 5.481 29 C 0.077 3.923 30 H -0.007 1.007 31 H 0.017 0.983 32 H 0.039 0.961 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.380 0.620 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.174 0.826 43 H 0.217 0.783 44 H 0.271 0.729 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.130 -24.224 -20.274 33.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.069 0.931 5 C -0.244 4.244 6 N -0.581 5.581 7 Si 0.792 3.208 8 H -0.212 1.212 9 H -0.212 1.212 10 H -0.201 1.201 11 C -0.005 4.005 12 C 0.033 3.967 13 H 0.064 0.936 14 O -0.362 6.362 15 C -0.028 4.028 16 N -0.327 5.327 17 C -0.068 4.068 18 C 0.338 3.662 19 O -0.448 6.448 20 C -0.069 4.069 21 C -0.161 4.161 22 C -0.027 4.027 23 N -0.188 5.188 24 C -0.019 4.019 25 C -0.109 4.109 26 N -0.257 5.257 27 C 0.005 3.995 28 N -0.173 5.173 29 C -0.063 4.063 30 H 0.011 0.989 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.228 0.772 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.191 0.809 43 H 0.233 0.767 44 H 0.287 0.713 45 H 0.104 0.896 46 H 0.144 0.856 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.083 -23.439 -20.303 33.281 hybrid contribution 0.028 1.207 0.734 1.413 sum 12.111 -22.232 -19.569 31.998 Atomic orbital electron populations 1.20486 0.82291 0.97242 0.96006 1.43876 1.02274 1.01068 1.86079 1.19353 1.00553 0.88529 1.31007 0.93135 1.25803 0.98699 1.01947 0.97904 1.70181 1.20807 1.28534 1.38560 0.85316 0.78271 0.80158 0.77020 1.21152 1.21181 1.20115 1.21488 0.96269 0.88261 0.94440 1.22623 0.84625 0.94935 0.94540 0.93570 1.86584 1.28966 1.64434 1.56204 1.22229 1.00691 0.97622 0.82271 1.47727 1.18221 1.52024 1.14702 1.22284 0.92960 0.94796 0.96771 1.18530 0.81305 0.80240 0.86114 1.90809 1.53936 1.37332 1.62737 1.19597 0.92104 1.00516 0.94683 1.22636 1.01086 0.99920 0.92449 1.23244 0.90450 0.92344 0.96699 1.66306 1.02209 1.16929 1.33386 1.19163 0.88493 1.02742 0.91469 1.19513 0.94086 1.04750 0.92567 1.70203 0.99845 1.21657 1.33979 1.26547 1.00996 0.93728 0.78191 1.45452 1.07034 1.52448 1.12377 1.22375 0.95870 1.01249 0.86788 0.98919 0.96416 0.94253 0.94086 0.91074 0.94163 0.77225 0.91288 0.85914 0.90626 0.90562 0.88225 0.80861 0.76675 0.71340 0.89590 0.85568 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 8.77 127.77 1.12 10.48 16 2 N -0.61 -32.27 2.83 -726.94 -2.06 -34.33 16 3 C -0.26 -15.78 9.62 84.04 0.81 -14.97 16 4 H 0.05 3.10 7.84 -2.91 -0.02 3.07 16 5 C -0.05 -2.88 5.12 84.86 0.43 -2.45 16 6 N -0.93 -57.68 10.80 21.65 0.23 -57.44 16 7 Si 0.96 48.50 29.56 68.60 2.03 50.53 16 8 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 9 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 C 0.12 5.09 5.38 86.38 0.46 5.56 16 12 C 0.10 3.47 3.48 30.59 0.11 3.58 16 13 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 14 O -0.56 -17.82 11.55 -148.98 -1.72 -19.54 16 15 C 0.10 2.71 5.07 86.38 0.44 3.14 16 16 N -0.60 -16.19 2.84 -850.29 -2.41 -18.61 16 17 C 0.07 1.19 8.67 127.77 1.11 2.30 16 18 C 0.55 19.12 7.32 86.76 0.64 19.75 16 19 O -0.57 -25.91 16.64 -3.93 -0.07 -25.98 16 20 C -0.06 -1.61 5.04 -19.75 -0.10 -1.71 16 21 C -0.14 -2.70 7.81 22.63 0.18 -2.52 16 22 C 0.14 2.20 11.14 84.73 0.94 3.14 16 23 N -0.48 -9.80 10.35 -192.84 -2.00 -11.80 16 24 C 0.22 5.13 8.02 133.93 1.07 6.20 16 25 C 0.01 0.42 6.94 40.01 0.28 0.69 16 26 N -0.54 -15.93 11.23 -191.50 -2.15 -18.08 16 27 C 0.29 5.02 12.50 180.02 2.25 7.27 16 28 N -0.48 -7.82 3.20 -549.32 -1.76 -9.58 16 29 C 0.08 0.44 11.20 127.77 1.43 1.87 16 30 H -0.01 -0.40 7.79 -2.38 -0.02 -0.42 16 31 H 0.02 0.98 6.89 -2.39 -0.02 0.96 16 32 H 0.04 1.64 6.81 -2.38 -0.02 1.62 16 33 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 35 H 0.04 1.78 8.04 -2.38 -0.02 1.76 16 36 H 0.38 8.53 8.81 -74.06 -0.65 7.88 16 37 H 0.07 2.30 7.48 -2.39 -0.02 2.28 16 38 H 0.12 2.38 7.86 -2.39 -0.02 2.36 16 39 H 0.08 1.13 7.01 -2.39 -0.02 1.12 16 40 H 0.08 1.11 6.17 -2.38 -0.01 1.10 16 41 H 0.10 1.11 7.84 -2.39 -0.02 1.10 16 42 H 0.17 2.58 6.07 -2.91 -0.02 2.56 16 43 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.27 1.38 8.06 -2.91 -0.02 1.35 16 45 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -96.29 390.10 1.62 -94.67 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.36 Total: 7.83 kcal Atomic # 6 Polarization: 31.15 SS G_CDS: 11.17 Total: 42.32 kcal Atomic # 7 Polarization: -139.69 SS G_CDS: -10.14 Total: -149.84 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.79 Total: -45.52 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -96.29 1.62 -94.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734542069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.896 kcal (2) G-P(sol) polarization free energy of solvation -96.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds