Wall clock time and date at job start Wed Apr 1 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99451 * 2 1 4 4 H 1.08010 * 119.99360 * 202.77075 * 3 2 1 5 5 C 1.38814 * 120.00484 * 22.77612 * 3 2 1 6 6 N 1.31614 * 119.99708 * 12.30359 * 5 3 2 7 7 Si 1.86802 * 120.00157 * 192.30264 * 5 3 2 8 8 H 1.48495 * 109.47047 * 89.99555 * 7 5 3 9 9 H 1.48496 * 109.47090 * 210.00024 * 7 5 3 10 10 H 1.48498 * 109.46980 * 329.99961 * 7 5 3 11 11 C 1.46500 * 120.00382 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47422 * 89.99181 * 11 2 1 13 13 H 1.09003 * 109.47241 * 305.00874 * 12 11 2 14 14 O 1.42910 * 109.46742 * 65.00094 * 12 11 2 15 15 C 1.52996 * 109.47456 * 185.00104 * 12 11 2 16 16 N 1.46494 * 109.47234 * 180.02562 * 15 12 11 17 17 C 1.46499 * 120.00158 * 269.99751 * 16 15 12 18 18 C 1.34775 * 120.00288 * 90.00395 * 16 15 12 19 19 O 1.21570 * 120.00128 * 4.81074 * 18 16 15 20 20 C 1.47717 * 120.00122 * 184.81531 * 18 16 15 21 21 C 1.40258 * 119.88053 * 139.78057 * 20 18 16 22 22 C 1.36163 * 120.55771 * 180.32036 * 21 20 18 23 23 C 1.39908 * 119.97492 * 359.41590 * 22 21 20 24 24 N 1.34758 * 134.59372 * 180.25404 * 23 22 21 25 25 N 1.28640 * 109.29413 * 180.02562 * 24 23 22 26 26 N 1.28822 * 111.78933 * 359.97438 * 25 24 23 27 27 C 1.46505 * 125.93703 * 180.02562 * 26 25 24 28 28 C 1.37360 * 108.11694 * 359.97438 * 26 25 24 29 29 C 1.38620 * 134.88726 * 179.97438 * 28 26 25 30 30 H 1.09004 * 109.46721 * 269.76510 * 1 2 3 31 31 H 1.08996 * 109.47375 * 29.76300 * 1 2 3 32 32 H 1.09003 * 109.46874 * 149.77202 * 1 2 3 33 33 H 0.96998 * 120.00286 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46515 * 329.99123 * 11 2 1 35 35 H 1.08998 * 109.47016 * 210.00030 * 11 2 1 36 36 H 0.96703 * 113.99998 * 60.00368 * 14 12 11 37 37 H 1.09006 * 109.46992 * 59.99955 * 15 12 11 38 38 H 1.09004 * 109.46819 * 300.00354 * 15 12 11 39 39 H 1.09004 * 109.47559 * 267.39856 * 17 16 15 40 40 H 1.09007 * 109.46651 * 27.39491 * 17 16 15 41 41 H 1.08998 * 109.47646 * 147.39320 * 17 16 15 42 42 H 1.08002 * 119.72465 * 0.02562 * 21 20 18 43 43 H 1.08000 * 120.01721 * 179.70207 * 22 21 20 44 44 H 1.09005 * 109.46683 * 90.02381 * 27 26 25 45 45 H 1.08997 * 109.46993 * 210.02175 * 27 26 25 46 46 H 1.09001 * 109.47403 * 330.03134 * 27 26 25 47 47 H 1.07994 * 120.24348 * 0.06051 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1665 1.2224 -0.3621 5 6 1.5367 2.3413 0.4654 6 7 0.4007 2.2634 1.1255 7 14 2.3241 4.0065 0.1547 8 1 1.8260 4.5574 -1.1311 9 1 1.9730 4.9340 1.2599 10 1 3.7995 3.8516 0.0883 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5061 -1.7541 -1.9822 14 8 3.3209 -0.7716 -2.0818 15 6 3.1061 -3.0932 -1.4456 16 7 3.3507 -3.5153 -2.8269 17 6 2.3263 -4.2681 -3.5551 18 6 4.5181 -3.2112 -3.4279 19 8 5.4018 -2.6640 -2.7975 20 6 4.7237 -3.5427 -4.8526 21 6 5.3871 -2.6360 -5.6923 22 6 5.5784 -2.9247 -7.0091 23 6 5.1224 -4.1397 -7.5319 24 7 5.1538 -4.7173 -8.7490 25 7 4.5795 -5.8668 -8.6889 26 7 4.1500 -6.1253 -7.5022 27 6 3.4516 -7.3445 -7.0871 28 6 4.4618 -5.0596 -6.6935 29 6 4.2660 -4.7571 -5.3550 30 1 -0.3633 -0.0042 1.0277 31 1 -0.3634 0.8921 -0.5101 32 1 -0.3633 -0.8880 -0.5174 33 1 -0.0278 3.0706 1.4504 34 1 1.6085 -2.0285 0.5131 35 1 3.1500 -1.1385 0.5133 36 1 4.1836 -0.6803 -1.6547 37 1 2.4437 -3.8088 -0.9585 38 1 4.0525 -3.0488 -0.9066 39 1 2.5047 -5.3364 -3.4327 40 1 1.3417 -4.0166 -3.1609 41 1 2.3704 -4.0114 -4.6136 42 1 5.7450 -1.6989 -5.2921 43 1 6.0861 -2.2181 -7.6489 44 1 4.1793 -8.0841 -6.7530 45 1 2.7688 -7.1117 -6.2700 46 1 2.8874 -7.7447 -7.9294 47 1 3.7599 -5.4577 -4.7074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734542243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:17 Heat of formation + Delta-G solvation = 51.632587 kcal Electronic energy + Delta-G solvation = -30653.198120 eV Core-core repulsion = 26453.049953 eV Total energy + Delta-G solvation = -4200.148166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -44.27771 -41.32434 -39.06971 -38.25492 -36.81711 -36.19728 -35.80947 -33.30811 -32.32433 -31.86837 -30.72652 -28.84440 -28.14067 -27.87357 -27.13220 -25.33497 -24.61059 -23.47864 -22.22016 -22.09359 -20.91675 -19.27807 -18.78820 -18.39439 -18.06128 -17.76751 -17.55998 -16.82246 -16.67933 -16.53348 -16.02847 -15.84596 -15.46911 -15.32056 -14.98529 -14.86350 -14.60945 -14.38705 -14.03170 -13.97782 -13.72623 -13.67306 -13.38010 -13.23299 -13.11887 -12.94545 -12.81437 -12.74577 -12.55776 -12.46106 -12.21771 -12.06175 -11.85114 -11.81989 -11.79538 -11.75754 -11.16490 -11.00013 -10.55432 -10.11348 -9.59146 -9.41579 -8.64401 -7.79414 -5.23840 -0.74467 0.09030 1.01987 1.19287 1.45471 1.47678 1.55590 1.66373 2.00090 2.53767 2.54190 2.82698 3.34087 3.38149 3.44112 3.57344 3.62825 3.81827 3.87586 3.98169 4.11769 4.22998 4.23814 4.29003 4.32480 4.42647 4.53730 4.59096 4.63093 4.64543 4.74711 4.79801 4.85285 4.86046 4.91271 4.98877 5.07601 5.17442 5.29901 5.39663 5.41952 5.48493 5.54629 5.67206 5.75339 6.34016 6.38851 6.97344 7.11205 7.16599 7.21499 7.93062 8.34323 9.24916 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.002358 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.313187 B =11869.272994 C =12591.729109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.613 5.613 3 C -0.235 4.235 4 H 0.067 0.933 5 C -0.062 4.062 6 N -0.944 5.944 7 Si 0.962 3.038 8 H -0.292 1.292 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.121 3.879 12 C 0.082 3.918 13 H 0.080 0.920 14 O -0.564 6.564 15 C 0.091 3.909 16 N -0.598 5.598 17 C 0.059 3.941 18 C 0.563 3.437 19 O -0.565 6.565 20 C -0.103 4.103 21 C -0.074 4.074 22 C -0.061 4.061 23 C 0.006 3.994 24 N -0.294 5.294 25 N -0.031 5.031 26 N -0.301 5.301 27 C 0.068 3.932 28 C 0.009 3.991 29 C -0.046 4.046 30 H 0.000 1.000 31 H 0.018 0.982 32 H 0.031 0.969 33 H 0.245 0.755 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.369 0.631 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.141 0.859 43 H 0.156 0.844 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -25.421 -14.096 29.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.336 5.336 3 C -0.366 4.366 4 H 0.085 0.915 5 C -0.256 4.256 6 N -0.592 5.592 7 Si 0.792 3.208 8 H -0.220 1.220 9 H -0.222 1.222 10 H -0.196 1.196 11 C -0.006 4.006 12 C 0.019 3.981 13 H 0.098 0.902 14 O -0.369 6.369 15 C -0.032 4.032 16 N -0.329 5.329 17 C -0.082 4.082 18 C 0.351 3.649 19 O -0.444 6.444 20 C -0.110 4.110 21 C -0.096 4.096 22 C -0.083 4.083 23 C -0.120 4.120 24 N -0.168 5.168 25 N -0.012 5.012 26 N -0.103 5.103 27 C -0.070 4.070 28 C -0.111 4.111 29 C -0.068 4.068 30 H 0.018 0.982 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.216 0.784 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.128 0.872 45 H 0.147 0.853 46 H 0.136 0.864 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.902 -25.587 -15.517 30.178 hybrid contribution 0.481 1.687 1.315 2.192 sum 4.383 -23.900 -14.202 28.145 Atomic orbital electron populations 1.20527 0.82890 0.96450 0.96953 1.44010 1.01980 1.01695 1.85893 1.19457 0.97988 0.86671 1.32463 0.91494 1.25693 0.98899 1.01558 0.99443 1.70210 1.20372 1.27161 1.41451 0.85321 0.78419 0.80568 0.76511 1.21977 1.22196 1.19572 1.21552 0.96454 0.87804 0.94782 1.22987 0.92755 0.87348 0.95024 0.90202 1.86529 1.29228 1.64315 1.56856 1.22244 1.02436 0.96335 0.82197 1.47665 1.15979 1.54901 1.14328 1.22469 0.91558 0.96733 0.97482 1.18290 0.82244 0.77979 0.86355 1.90766 1.43759 1.43915 1.65995 1.19725 1.01822 0.96058 0.93358 1.20841 0.96575 0.99840 0.92340 1.20054 0.99446 0.93882 0.94896 1.20388 1.03075 0.97933 0.90634 1.75328 1.18964 1.01744 1.20731 1.77907 1.08335 1.11248 1.03711 1.47574 1.41214 1.16317 1.05172 1.22870 0.98402 0.80974 1.04773 1.19677 1.05405 0.90461 0.95511 1.20583 0.98792 0.96720 0.90734 0.98204 0.96342 0.95066 0.94573 0.91259 0.93549 0.78386 0.86138 0.90289 0.88649 0.89638 0.90596 0.84138 0.82617 0.87151 0.85329 0.86353 0.80424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.62 8.98 127.77 1.15 9.77 16 2 N -0.61 -30.19 2.90 -726.92 -2.11 -32.30 16 3 C -0.24 -13.06 9.21 84.03 0.77 -12.29 16 4 H 0.07 3.69 7.58 -2.91 -0.02 3.67 16 5 C -0.06 -3.58 5.08 84.86 0.43 -3.15 16 6 N -0.94 -56.87 10.69 21.65 0.23 -56.64 16 7 Si 0.96 47.10 29.57 68.60 2.03 49.13 16 8 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 9 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 C 0.12 4.45 5.35 86.38 0.46 4.91 16 12 C 0.08 2.53 3.48 30.59 0.11 2.64 16 13 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 14 O -0.56 -21.53 11.49 -147.01 -1.69 -23.22 16 15 C 0.09 1.99 5.16 86.38 0.45 2.43 16 16 N -0.60 -11.75 2.83 -850.34 -2.40 -14.15 16 17 C 0.06 0.61 8.89 127.77 1.14 1.75 16 18 C 0.56 13.95 6.76 86.75 0.59 14.54 16 19 O -0.56 -18.44 15.60 -1.96 -0.03 -18.47 16 20 C -0.10 -2.11 5.20 -20.06 -0.10 -2.21 16 21 C -0.07 -1.62 9.54 22.28 0.21 -1.41 16 22 C -0.06 -1.26 10.03 22.19 0.22 -1.03 16 23 C 0.01 0.14 7.36 39.75 0.29 0.43 16 24 N -0.29 -7.44 12.42 -52.38 -0.65 -8.09 16 25 N -0.03 -0.66 13.07 37.02 0.48 -0.18 16 26 N -0.30 -4.25 3.80 -361.26 -1.37 -5.63 16 27 C 0.07 0.11 11.40 127.77 1.46 1.57 16 28 C 0.01 0.15 6.93 39.02 0.27 0.42 16 29 C -0.05 -0.65 7.54 22.58 0.17 -0.48 16 30 H 0.00 -0.02 7.66 -2.38 -0.02 -0.04 16 31 H 0.02 0.98 6.94 -2.39 -0.02 0.97 16 32 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 35 H 0.05 1.75 8.04 -2.39 -0.02 1.73 16 36 H 0.37 13.67 8.61 -74.06 -0.64 13.03 16 37 H 0.12 1.76 8.07 -2.38 -0.02 1.74 16 38 H 0.08 1.93 7.36 -2.38 -0.02 1.91 16 39 H 0.10 0.27 7.01 -2.38 -0.02 0.26 16 40 H 0.08 0.81 8.05 -2.38 -0.02 0.80 16 41 H 0.08 0.82 5.73 -2.39 -0.01 0.81 16 42 H 0.14 3.19 8.05 -2.91 -0.02 3.17 16 43 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 45 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.18 1.08 5.48 -2.91 -0.02 1.06 16 Total: -1.00 -82.91 388.28 2.47 -80.44 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.37 Total: 11.22 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 7.61 Total: 17.88 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -5.82 Total: -116.98 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.72 Total: -41.69 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -82.91 2.47 -80.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734542243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.072 kcal (2) G-P(sol) polarization free energy of solvation -82.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds