Wall clock time and date at job start Wed Apr 1 2020 05:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99657 * 2 1 4 4 H 1.08004 * 119.99303 * 166.45807 * 3 2 1 5 5 C 1.38808 * 120.00620 * 346.17428 * 3 2 1 6 6 N 1.31625 * 119.99411 * 343.20397 * 5 3 2 7 7 Si 1.86797 * 120.00470 * 163.19854 * 5 3 2 8 8 H 1.48505 * 109.46567 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46966 * 119.99857 * 7 5 3 10 10 H 1.48486 * 109.47526 * 240.00616 * 7 5 3 11 11 C 1.46499 * 119.99868 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46966 * 270.00148 * 11 2 1 13 13 H 1.08992 * 109.47387 * 60.00241 * 12 11 2 14 14 O 1.42897 * 109.46965 * 299.99895 * 12 11 2 15 15 C 1.53002 * 109.46685 * 179.97438 * 12 11 2 16 16 N 1.46501 * 109.46874 * 185.00018 * 15 12 11 17 17 C 1.46496 * 120.00230 * 90.00215 * 16 15 12 18 18 C 1.34783 * 119.99942 * 270.00297 * 16 15 12 19 19 O 1.21569 * 120.00289 * 4.68695 * 18 16 15 20 20 C 1.47720 * 119.99733 * 184.69146 * 18 16 15 21 21 C 1.40254 * 119.88405 * 22.31931 * 20 18 16 22 22 C 1.36158 * 120.55766 * 179.97438 * 21 20 18 23 23 C 1.39909 * 119.97888 * 359.97438 * 22 21 20 24 24 N 1.34743 * 134.59469 * 179.97438 * 23 22 21 25 25 N 1.28645 * 109.29754 * 180.02562 * 24 23 22 26 26 N 1.28819 * 111.78916 * 0.02562 * 25 24 23 27 27 C 1.46495 * 125.94271 * 180.02562 * 26 25 24 28 28 C 1.37368 * 108.11373 * 0.02562 * 26 25 24 29 29 C 1.38619 * 134.89197 * 180.28948 * 28 26 25 30 30 H 1.09006 * 109.46928 * 84.82125 * 1 2 3 31 31 H 1.08993 * 109.47261 * 204.82187 * 1 2 3 32 32 H 1.08996 * 109.47400 * 324.82741 * 1 2 3 33 33 H 0.97002 * 119.99486 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47066 * 30.00263 * 11 2 1 35 35 H 1.09005 * 109.47069 * 150.00218 * 11 2 1 36 36 H 0.96692 * 114.00497 * 299.99990 * 14 12 11 37 37 H 1.08990 * 109.47734 * 305.00161 * 15 12 11 38 38 H 1.09004 * 109.46819 * 65.00385 * 15 12 11 39 39 H 1.09004 * 109.47501 * 84.42787 * 17 16 15 40 40 H 1.08997 * 109.47361 * 204.42565 * 17 16 15 41 41 H 1.09005 * 109.47069 * 324.42817 * 17 16 15 42 42 H 1.07999 * 119.71835 * 359.97438 * 21 20 18 43 43 H 1.08003 * 120.01172 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47373 * 90.02675 * 27 26 25 45 45 H 1.09002 * 109.46949 * 210.02140 * 27 26 25 46 46 H 1.08997 * 109.47478 * 330.02343 * 27 26 25 47 47 H 1.08001 * 120.23827 * 359.93074 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2072 1.1989 0.2190 5 6 1.4858 2.3707 -0.2873 6 7 0.3079 2.3394 -0.8737 7 14 2.2640 4.0093 0.1585 8 1 3.5806 3.7727 0.8036 9 1 2.4546 4.8179 -1.0723 10 1 1.3761 4.7397 1.0982 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4433 13 1 1.5001 -1.8399 1.9571 14 8 3.2247 -0.7136 2.1164 15 6 3.2168 -3.0351 1.4438 16 7 3.3567 -3.5176 2.8200 17 6 2.3318 -4.3904 3.3980 18 6 4.4283 -3.1585 3.5544 19 8 5.2349 -2.3671 3.1061 20 6 4.6227 -3.7267 4.9040 21 6 4.0089 -4.9404 5.2463 22 6 4.1792 -5.4768 6.4861 23 6 4.9724 -4.8164 7.4306 24 7 5.3332 -5.0673 8.7044 25 7 6.0927 -4.1184 9.1259 26 7 6.2827 -3.2206 8.2219 27 6 7.0941 -2.0099 8.3694 28 6 5.5919 -3.5959 7.0954 29 6 5.4178 -3.0579 5.8298 30 1 -0.3633 0.0928 -1.0235 31 1 -0.3633 -0.9327 0.4314 32 1 -0.3634 0.8400 0.5919 33 1 -0.1562 3.1673 -1.0741 34 1 1.6084 -2.0286 -0.5130 35 1 3.1500 -1.1386 -0.5133 36 1 4.0872 -0.5453 1.7129 37 1 2.6692 -3.7707 0.8548 38 1 4.2052 -2.8847 1.0093 39 1 2.5338 -5.4239 3.1165 40 1 2.3479 -4.2999 4.4840 41 1 1.3512 -4.0968 3.0233 42 1 3.3961 -5.4539 4.5203 43 1 3.7028 -6.4122 6.7402 44 1 8.1206 -2.2217 8.0702 45 1 6.6871 -1.2204 7.7375 46 1 7.0785 -1.6865 9.4102 47 1 5.8941 -2.1254 5.5650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734542245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:30 Heat of formation + Delta-G solvation = 96.701728 kcal Electronic energy + Delta-G solvation = -30583.931223 eV Core-core repulsion = 26385.737401 eV Total energy + Delta-G solvation = -4198.193822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.51815 -40.45590 -37.96998 -37.07395 -35.58178 -35.21945 -34.51815 -31.62615 -31.22492 -31.08963 -29.39254 -28.31090 -27.31089 -26.17813 -25.73176 -24.32864 -23.57707 -22.01964 -21.49012 -20.42772 -19.97869 -18.81572 -17.83751 -17.08222 -16.92674 -16.54569 -16.21840 -15.95891 -15.16865 -15.08424 -14.77798 -14.67335 -14.45539 -14.33171 -13.98740 -13.63252 -13.55222 -13.42656 -13.24565 -13.09066 -12.76075 -12.63400 -12.42687 -12.23872 -11.84468 -11.65140 -11.38965 -11.13875 -11.04464 -11.03636 -10.82248 -10.64777 -10.53992 -10.31645 -9.99961 -9.90694 -9.83249 -9.58249 -9.26217 -8.75426 -8.57202 -8.34423 -6.74405 -5.64792 -3.01040 0.02712 0.80862 1.77016 1.82017 2.68778 2.85295 3.42907 3.44598 3.52000 3.55285 3.58546 4.04975 4.17723 4.27250 4.54549 4.57328 4.61530 4.65110 4.78102 4.86123 4.94275 5.00378 5.01813 5.09911 5.22951 5.41094 5.45291 5.52294 5.52756 5.63422 5.67745 5.78685 5.85184 5.87164 5.96803 6.03500 6.08003 6.19854 6.42857 6.51414 6.70092 6.78151 7.27139 7.47584 7.73386 7.90757 7.95040 8.09538 8.40074 8.50875 9.30810 9.94544 10.39111 11.41657 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.002476 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.530661 B =11305.753265 C =12570.879197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.230 4.230 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.915 5.915 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.294 1.294 10 H -0.292 1.292 11 C 0.125 3.875 12 C 0.071 3.929 13 H 0.084 0.916 14 O -0.537 6.537 15 C 0.082 3.918 16 N -0.601 5.601 17 C 0.058 3.942 18 C 0.563 3.437 19 O -0.522 6.522 20 C -0.097 4.097 21 C -0.114 4.114 22 C -0.060 4.060 23 C 0.026 3.974 24 N -0.259 5.259 25 N -0.017 5.017 26 N -0.314 5.314 27 C 0.085 3.915 28 C 0.013 3.987 29 C -0.033 4.033 30 H 0.025 0.975 31 H -0.008 1.008 32 H 0.052 0.948 33 H 0.249 0.751 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.368 0.632 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.164 0.836 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -17.440 14.302 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.359 4.359 4 H 0.089 0.911 5 C -0.206 4.206 6 N -0.563 5.563 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.221 1.221 10 H -0.219 1.219 11 C -0.004 4.004 12 C 0.007 3.993 13 H 0.102 0.898 14 O -0.341 6.341 15 C -0.041 4.041 16 N -0.333 5.333 17 C -0.084 4.084 18 C 0.351 3.649 19 O -0.399 6.399 20 C -0.104 4.104 21 C -0.135 4.135 22 C -0.082 4.082 23 C -0.100 4.100 24 N -0.134 5.134 25 N 0.002 4.998 26 N -0.115 5.115 27 C -0.056 4.056 28 C -0.106 4.106 29 C -0.055 4.055 30 H 0.043 0.957 31 H 0.011 0.989 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.214 0.786 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.181 0.819 43 H 0.162 0.838 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.110 -17.206 15.841 25.099 hybrid contribution 0.545 1.371 -1.050 1.810 sum 9.655 -15.835 14.791 23.722 Atomic orbital electron populations 1.20836 0.82358 0.95506 0.99263 1.43821 1.01890 1.00492 1.85544 1.19222 0.93624 0.83928 1.39154 0.91094 1.24815 0.97488 0.97967 1.00324 1.70148 1.15862 1.25596 1.44654 0.86193 0.78532 0.84317 0.77624 1.20382 1.22142 1.21859 1.21319 0.96760 0.89382 0.92989 1.23145 0.93741 0.85312 0.97088 0.89782 1.86564 1.32633 1.59129 1.55790 1.22462 1.02704 0.97873 0.81024 1.47554 1.21812 1.49497 1.14424 1.22518 0.92174 0.93422 1.00306 1.17951 0.81525 0.81088 0.84358 1.90770 1.44335 1.33145 1.71624 1.19765 0.99717 0.96352 0.94542 1.21863 0.99053 0.95250 0.97310 1.19963 0.97170 0.99908 0.91137 1.20126 1.01789 0.94718 0.93357 1.75358 1.11363 1.17524 1.09107 1.77992 1.11732 0.94713 1.15357 1.47146 1.36530 1.19621 1.08184 1.22319 0.95020 0.82190 1.06081 1.19618 1.01055 0.98409 0.91508 1.20068 0.97023 1.00144 0.88295 0.95690 0.98935 0.92952 0.94067 0.93878 0.93188 0.78595 0.89860 0.89657 0.91849 0.89255 0.90757 0.81899 0.83824 0.88918 0.88012 0.87691 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.98 59.85 0.54 4.62 16 2 N -0.60 -14.82 2.88 -181.12 -0.52 -15.34 16 3 C -0.23 -6.34 9.08 -15.06 -0.14 -6.48 16 4 H 0.07 1.92 7.82 -52.48 -0.41 1.51 16 5 C -0.01 -0.28 5.06 -17.43 -0.09 -0.37 16 6 N -0.92 -27.13 10.41 55.49 0.58 -26.56 16 7 Si 0.90 22.60 29.59 -169.99 -5.03 17.57 16 8 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 C 0.12 2.38 5.36 -4.04 -0.02 2.36 16 12 C 0.07 1.18 3.48 -26.73 -0.09 1.09 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 14 O -0.54 -10.65 11.29 -47.90 -0.54 -11.19 16 15 C 0.08 1.03 5.13 -4.04 -0.02 1.01 16 16 N -0.60 -6.90 2.86 -182.74 -0.52 -7.42 16 17 C 0.06 0.44 8.67 59.84 0.52 0.96 16 18 C 0.56 7.47 7.20 -12.38 -0.09 7.38 16 19 O -0.52 -8.59 14.83 -7.36 -0.11 -8.70 16 20 C -0.10 -1.06 5.56 -104.92 -0.58 -1.64 16 21 C -0.11 -0.94 7.46 -39.57 -0.30 -1.23 16 22 C -0.06 -0.52 10.03 -39.70 -0.40 -0.91 16 23 C 0.03 0.30 7.36 -84.95 -0.63 -0.33 16 24 N -0.26 -3.32 12.42 32.09 0.40 -2.92 16 25 N -0.02 -0.20 13.07 60.35 0.79 0.59 16 26 N -0.31 -3.09 3.80 -65.54 -0.25 -3.34 16 27 C 0.08 0.42 11.40 59.84 0.68 1.10 16 28 C 0.01 0.14 6.94 -84.23 -0.58 -0.45 16 29 C -0.03 -0.36 9.59 -39.10 -0.37 -0.73 16 30 H 0.02 0.66 7.58 -51.93 -0.39 0.27 16 31 H -0.01 -0.17 8.03 -51.93 -0.42 -0.59 16 32 H 0.05 1.43 6.80 -51.93 -0.35 1.08 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 36 H 0.37 6.93 8.63 45.56 0.39 7.32 16 37 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.09 1.13 7.49 -51.93 -0.39 0.74 16 39 H 0.06 0.31 7.18 -51.93 -0.37 -0.06 16 40 H 0.09 0.63 4.95 -51.93 -0.26 0.37 16 41 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 42 H 0.16 0.91 4.13 -52.49 -0.22 0.69 16 43 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.14 1.51 7.79 -52.49 -0.41 1.10 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -36.83 385.41 -6.72 -43.55 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.75 Total: 1.57 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.57 Total: 6.39 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.47 Total: -54.99 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.65 Total: -19.89 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.83 -6.72 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734542245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.252 kcal (2) G-P(sol) polarization free energy of solvation -36.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds