Wall clock time and date at job start Wed Apr 1 2020 05:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99657 * 2 1 4 4 H 1.08004 * 119.99303 * 166.45807 * 3 2 1 5 5 C 1.38808 * 120.00620 * 346.17428 * 3 2 1 6 6 N 1.31625 * 119.99411 * 343.20397 * 5 3 2 7 7 Si 1.86797 * 120.00470 * 163.19854 * 5 3 2 8 8 H 1.48505 * 109.46567 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46966 * 119.99857 * 7 5 3 10 10 H 1.48486 * 109.47526 * 240.00616 * 7 5 3 11 11 C 1.46499 * 119.99868 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46966 * 270.00148 * 11 2 1 13 13 H 1.08992 * 109.47387 * 60.00241 * 12 11 2 14 14 O 1.42897 * 109.46965 * 299.99895 * 12 11 2 15 15 C 1.53002 * 109.46685 * 179.97438 * 12 11 2 16 16 N 1.46501 * 109.46874 * 185.00018 * 15 12 11 17 17 C 1.46496 * 120.00230 * 90.00215 * 16 15 12 18 18 C 1.34783 * 119.99942 * 270.00297 * 16 15 12 19 19 O 1.21569 * 120.00289 * 4.68695 * 18 16 15 20 20 C 1.47720 * 119.99733 * 184.69146 * 18 16 15 21 21 C 1.40254 * 119.88405 * 22.31931 * 20 18 16 22 22 C 1.36158 * 120.55766 * 179.97438 * 21 20 18 23 23 C 1.39909 * 119.97888 * 359.97438 * 22 21 20 24 24 N 1.34743 * 134.59469 * 179.97438 * 23 22 21 25 25 N 1.28645 * 109.29754 * 180.02562 * 24 23 22 26 26 N 1.28819 * 111.78916 * 0.02562 * 25 24 23 27 27 C 1.46495 * 125.94271 * 180.02562 * 26 25 24 28 28 C 1.37368 * 108.11373 * 0.02562 * 26 25 24 29 29 C 1.38619 * 134.89197 * 180.28948 * 28 26 25 30 30 H 1.09006 * 109.46928 * 84.82125 * 1 2 3 31 31 H 1.08993 * 109.47261 * 204.82187 * 1 2 3 32 32 H 1.08996 * 109.47400 * 324.82741 * 1 2 3 33 33 H 0.97002 * 119.99486 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47066 * 30.00263 * 11 2 1 35 35 H 1.09005 * 109.47069 * 150.00218 * 11 2 1 36 36 H 0.96692 * 114.00497 * 299.99990 * 14 12 11 37 37 H 1.08990 * 109.47734 * 305.00161 * 15 12 11 38 38 H 1.09004 * 109.46819 * 65.00385 * 15 12 11 39 39 H 1.09004 * 109.47501 * 84.42787 * 17 16 15 40 40 H 1.08997 * 109.47361 * 204.42565 * 17 16 15 41 41 H 1.09005 * 109.47069 * 324.42817 * 17 16 15 42 42 H 1.07999 * 119.71835 * 359.97438 * 21 20 18 43 43 H 1.08003 * 120.01172 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47373 * 90.02675 * 27 26 25 45 45 H 1.09002 * 109.46949 * 210.02140 * 27 26 25 46 46 H 1.08997 * 109.47478 * 330.02343 * 27 26 25 47 47 H 1.08001 * 120.23827 * 359.93074 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2072 1.1989 0.2190 5 6 1.4858 2.3707 -0.2873 6 7 0.3079 2.3394 -0.8737 7 14 2.2640 4.0093 0.1585 8 1 3.5806 3.7727 0.8036 9 1 2.4546 4.8179 -1.0723 10 1 1.3761 4.7397 1.0982 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4433 13 1 1.5001 -1.8399 1.9571 14 8 3.2247 -0.7136 2.1164 15 6 3.2168 -3.0351 1.4438 16 7 3.3567 -3.5176 2.8200 17 6 2.3318 -4.3904 3.3980 18 6 4.4283 -3.1585 3.5544 19 8 5.2349 -2.3671 3.1061 20 6 4.6227 -3.7267 4.9040 21 6 4.0089 -4.9404 5.2463 22 6 4.1792 -5.4768 6.4861 23 6 4.9724 -4.8164 7.4306 24 7 5.3332 -5.0673 8.7044 25 7 6.0927 -4.1184 9.1259 26 7 6.2827 -3.2206 8.2219 27 6 7.0941 -2.0099 8.3694 28 6 5.5919 -3.5959 7.0954 29 6 5.4178 -3.0579 5.8298 30 1 -0.3633 0.0928 -1.0235 31 1 -0.3633 -0.9327 0.4314 32 1 -0.3634 0.8400 0.5919 33 1 -0.1562 3.1673 -1.0741 34 1 1.6084 -2.0286 -0.5130 35 1 3.1500 -1.1386 -0.5133 36 1 4.0872 -0.5453 1.7129 37 1 2.6692 -3.7707 0.8548 38 1 4.2052 -2.8847 1.0093 39 1 2.5338 -5.4239 3.1165 40 1 2.3479 -4.2999 4.4840 41 1 1.3512 -4.0968 3.0233 42 1 3.3961 -5.4539 4.5203 43 1 3.7028 -6.4122 6.7402 44 1 8.1206 -2.2217 8.0702 45 1 6.6871 -1.2204 7.7375 46 1 7.0785 -1.6865 9.4102 47 1 5.8941 -2.1254 5.5650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734542245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:28 Heat of formation + Delta-G solvation = 69.798762 kcal Electronic energy + Delta-G solvation = -30585.097823 eV Core-core repulsion = 26385.737401 eV Total energy + Delta-G solvation = -4199.360422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -44.29515 -41.37612 -39.05932 -38.26825 -36.84333 -36.09033 -35.93322 -33.28415 -32.33006 -31.90361 -30.68351 -28.90572 -28.25316 -27.90824 -27.18371 -25.37802 -24.40426 -23.47874 -22.20332 -22.06895 -20.88716 -19.62550 -18.82149 -18.52313 -17.82865 -17.69398 -17.25013 -17.01064 -16.75028 -16.24808 -16.07333 -15.72005 -15.47856 -15.28231 -15.07139 -14.95754 -14.63817 -14.43640 -14.29079 -13.91694 -13.81774 -13.67529 -13.41114 -13.20802 -13.09506 -12.98885 -12.80962 -12.60726 -12.49287 -12.19007 -12.10951 -11.97141 -11.86408 -11.85149 -11.80133 -11.76883 -11.09238 -10.96117 -10.53954 -10.04954 -9.62478 -9.38384 -8.72776 -7.78082 -5.14690 -0.77223 0.09003 0.98041 1.13578 1.44145 1.47017 1.56871 1.79361 2.00511 2.54526 2.62020 2.84907 3.34142 3.39710 3.44643 3.57205 3.62769 3.85332 3.91883 3.93829 4.10420 4.14795 4.20979 4.30760 4.35588 4.43404 4.51967 4.54807 4.61258 4.68149 4.78240 4.83198 4.84904 4.86430 4.97583 4.99216 5.10033 5.14386 5.31757 5.39314 5.43256 5.48198 5.59106 5.64914 5.78329 6.34903 6.38226 7.02312 7.13652 7.15262 7.21749 7.94549 8.32799 9.26480 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.002476 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.530661 B =11305.753265 C =12570.879197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.614 5.614 3 C -0.226 4.226 4 H 0.071 0.929 5 C -0.069 4.069 6 N -0.945 5.945 7 Si 0.960 3.040 8 H -0.271 1.271 9 H -0.294 1.294 10 H -0.297 1.297 11 C 0.120 3.880 12 C 0.080 3.920 13 H 0.078 0.922 14 O -0.562 6.562 15 C 0.094 3.906 16 N -0.599 5.599 17 C 0.046 3.954 18 C 0.556 3.444 19 O -0.565 6.565 20 C -0.106 4.106 21 C -0.099 4.099 22 C -0.056 4.056 23 C 0.010 3.990 24 N -0.288 5.288 25 N -0.033 5.033 26 N -0.308 5.308 27 C 0.072 3.928 28 C 0.000 4.000 29 C -0.040 4.040 30 H 0.001 0.999 31 H 0.031 0.969 32 H 0.017 0.983 33 H 0.243 0.757 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.368 0.632 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.197 0.803 43 H 0.173 0.827 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.122 0.878 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -19.724 14.714 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.337 5.337 3 C -0.356 4.356 4 H 0.089 0.911 5 C -0.262 4.262 6 N -0.595 5.595 7 Si 0.790 3.210 8 H -0.196 1.196 9 H -0.222 1.222 10 H -0.225 1.225 11 C -0.007 4.007 12 C 0.017 3.983 13 H 0.096 0.904 14 O -0.366 6.366 15 C -0.030 4.030 16 N -0.330 5.330 17 C -0.094 4.094 18 C 0.345 3.655 19 O -0.445 6.445 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.078 4.078 23 C -0.117 4.117 24 N -0.161 5.161 25 N -0.013 5.013 26 N -0.109 5.109 27 C -0.067 4.067 28 C -0.119 4.119 29 C -0.063 4.063 30 H 0.019 0.981 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.215 0.785 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.213 0.787 43 H 0.191 0.809 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.140 0.860 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.207 -19.547 16.286 27.057 hybrid contribution 0.546 2.022 -1.169 2.399 sum 9.753 -17.525 15.117 25.115 Atomic orbital electron populations 1.20557 0.82666 0.95978 0.97445 1.44075 1.02140 1.01766 1.85726 1.19491 0.93746 0.85226 1.37170 0.91128 1.25508 0.98378 1.00878 1.01402 1.70292 1.17142 1.25684 1.46392 0.85286 0.77856 0.80889 0.76997 1.19563 1.22169 1.22473 1.21578 0.96498 0.87685 0.94912 1.22980 0.93867 0.86835 0.94592 0.90379 1.86532 1.32920 1.60596 1.56586 1.22235 1.02031 0.96427 0.82306 1.47631 1.22044 1.49377 1.13907 1.22871 0.91263 0.94647 1.00652 1.18339 0.81517 0.80598 0.85038 1.90746 1.45976 1.35128 1.72619 1.19758 1.00541 0.97524 0.93455 1.22140 0.98254 0.93924 0.97645 1.20340 0.96334 1.00632 0.90511 1.20615 1.02414 0.95252 0.93408 1.75298 1.12406 1.18376 1.10030 1.77907 1.12168 0.95253 1.16006 1.47520 1.35965 1.19981 1.07450 1.22735 0.95403 0.80955 1.07607 1.19723 1.01696 0.98722 0.91794 1.20069 0.97445 1.00283 0.88519 0.98099 0.95016 0.96409 0.94736 0.91094 0.93297 0.78520 0.86101 0.90514 0.87991 0.88665 0.90129 0.78698 0.80939 0.87187 0.86998 0.85985 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.79 8.98 127.77 1.15 9.94 16 2 N -0.61 -30.19 2.88 -726.93 -2.09 -32.28 16 3 C -0.23 -12.48 9.08 84.03 0.76 -11.72 16 4 H 0.07 3.83 7.82 -2.91 -0.02 3.81 16 5 C -0.07 -3.96 5.06 84.86 0.43 -3.53 16 6 N -0.95 -57.21 10.41 21.65 0.23 -56.99 16 7 Si 0.96 47.20 29.59 68.60 2.03 49.23 16 8 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 9 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 10 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 11 C 0.12 4.36 5.36 86.38 0.46 4.82 16 12 C 0.08 2.51 3.48 30.59 0.11 2.61 16 13 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 14 O -0.56 -21.98 11.29 -136.87 -1.54 -23.53 16 15 C 0.09 2.05 5.13 86.38 0.44 2.50 16 16 N -0.60 -11.95 2.86 -850.33 -2.43 -14.38 16 17 C 0.05 0.49 8.67 127.77 1.11 1.60 16 18 C 0.56 13.91 7.20 86.75 0.62 14.53 16 19 O -0.57 -18.50 14.83 8.18 0.12 -18.38 16 20 C -0.11 -2.14 5.56 -20.06 -0.11 -2.25 16 21 C -0.10 -1.32 7.46 22.28 0.17 -1.15 16 22 C -0.06 -0.82 10.03 22.19 0.22 -0.60 16 23 C 0.01 0.21 7.36 39.76 0.29 0.50 16 24 N -0.29 -7.23 12.42 -52.39 -0.65 -7.88 16 25 N -0.03 -0.77 13.07 37.02 0.48 -0.28 16 26 N -0.31 -5.91 3.80 -361.28 -1.37 -7.28 16 27 C 0.07 0.66 11.40 127.77 1.46 2.11 16 28 C 0.00 -0.01 6.94 39.02 0.27 0.27 16 29 C -0.04 -0.87 9.59 22.58 0.22 -0.65 16 30 H 0.00 0.04 7.58 -2.38 -0.02 0.02 16 31 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 32 H 0.02 0.96 6.80 -2.39 -0.02 0.95 16 33 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 35 H 0.05 1.78 8.04 -2.38 -0.02 1.76 16 36 H 0.37 13.98 8.63 -74.06 -0.64 13.34 16 37 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 38 H 0.08 1.88 7.49 -2.38 -0.02 1.86 16 39 H 0.10 0.36 7.18 -2.38 -0.02 0.34 16 40 H 0.10 0.93 4.95 -2.39 -0.01 0.92 16 41 H 0.08 0.82 8.11 -2.38 -0.02 0.80 16 42 H 0.20 1.21 4.13 -2.91 -0.01 1.20 16 43 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 44 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 46 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.14 3.01 7.79 -2.91 -0.02 2.98 16 Total: -1.00 -82.51 385.41 2.74 -79.77 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.37 Total: 13.01 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 7.60 Total: 18.98 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -5.84 Total: -119.09 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.42 Total: -41.90 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -82.51 2.74 -79.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734542245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.570 kcal (2) G-P(sol) polarization free energy of solvation -82.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds