Wall clock time and date at job start Wed Apr 1 2020 05:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00240 * 2 1 4 4 C 1.53000 * 109.47492 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47112 * 64.99441 * 4 3 2 6 6 C 1.36947 * 119.99753 * 270.00182 * 5 4 3 7 7 H 1.08001 * 119.99446 * 142.64786 * 6 5 4 8 8 C 1.38812 * 120.00055 * 322.64262 * 6 5 4 9 9 N 1.31617 * 119.99978 * 157.14399 * 8 6 5 10 10 Si 1.86798 * 120.00120 * 337.14852 * 8 6 5 11 11 H 1.48491 * 109.47368 * 95.36532 * 10 8 6 12 12 H 1.48502 * 109.47288 * 215.36761 * 10 8 6 13 13 H 1.48501 * 109.46898 * 335.36479 * 10 8 6 14 14 C 1.46497 * 120.00178 * 90.00119 * 5 4 3 15 15 C 1.52991 * 109.47303 * 266.84889 * 14 5 4 16 16 N 1.46496 * 109.47456 * 179.05250 * 15 14 5 17 17 C 1.34774 * 120.00546 * 179.97438 * 16 15 14 18 18 O 1.21576 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.47722 * 120.00465 * 179.97438 * 17 16 15 20 20 C 1.40255 * 119.87615 * 0.31900 * 19 17 16 21 21 C 1.36169 * 120.55473 * 180.28938 * 20 19 17 22 22 C 1.39904 * 119.97525 * 359.42630 * 21 20 19 23 23 N 1.34755 * 134.59464 * 180.25616 * 22 21 20 24 24 N 1.28645 * 109.29411 * 180.02562 * 23 22 21 25 25 N 1.28812 * 111.79124 * 0.02562 * 24 23 22 26 26 C 1.46497 * 125.93947 * 180.02562 * 25 24 23 27 27 C 1.37360 * 108.11584 * 359.97438 * 25 24 23 28 28 C 1.38621 * 134.88845 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.47327 * 300.00603 * 1 2 3 30 30 H 1.09005 * 109.46985 * 60.00509 * 1 2 3 31 31 H 1.09002 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47430 * 59.99273 * 3 2 1 33 33 H 1.09003 * 109.46297 * 299.99236 * 3 2 1 34 34 H 1.09001 * 109.46929 * 304.99895 * 4 3 2 35 35 H 1.08996 * 109.47224 * 184.99546 * 4 3 2 36 36 H 0.96996 * 120.00210 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.46813 * 146.84452 * 14 5 4 38 38 H 1.09004 * 109.46868 * 26.84929 * 14 5 4 39 39 H 1.08994 * 109.47343 * 59.04808 * 15 14 5 40 40 H 1.09004 * 109.47118 * 299.04944 * 15 14 5 41 41 H 0.97005 * 120.00148 * 0.02562 * 16 15 14 42 42 H 1.08004 * 119.72602 * 359.97438 * 20 19 17 43 43 H 1.08002 * 120.00781 * 179.70760 * 21 20 19 44 44 H 1.08995 * 109.47648 * 90.02217 * 26 25 24 45 45 H 1.09001 * 109.46738 * 210.02370 * 26 25 24 46 46 H 1.08999 * 109.47392 * 330.01376 * 26 25 24 47 47 H 1.07999 * 120.24536 * 0.06880 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0979 -0.7977 -1.3342 7 1 3.8266 -1.3090 -2.2460 8 6 4.5693 -1.5204 -0.2469 9 7 4.2798 -2.7991 -0.1312 10 14 5.6146 -0.6782 1.0521 11 1 4.7494 -0.2425 2.1776 12 1 6.6398 -1.6278 1.5547 13 1 6.2856 0.5052 0.4567 14 6 4.2884 1.3996 -2.4130 15 6 3.0452 1.5304 -3.2951 16 7 3.3504 2.3845 -4.4455 17 6 2.3991 2.6423 -5.3648 18 8 1.2875 2.1664 -5.2390 19 6 2.7067 3.5041 -6.5245 20 6 3.9916 4.0473 -6.6700 21 6 4.2885 4.8481 -7.7305 22 6 3.3111 5.1252 -8.6924 23 7 3.2797 5.8510 -9.8274 24 7 2.1064 5.7734 -10.3492 25 7 1.3178 5.0371 -9.6454 26 6 -0.0831 4.7391 -9.9531 27 6 2.0193 4.5790 -8.5569 28 6 1.7221 3.7696 -7.4715 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8465 0.8898 33 1 1.6887 1.8462 -0.8901 34 1 3.8508 0.5686 0.8427 35 1 3.9785 2.1766 0.0901 36 1 4.6096 -3.3043 0.6283 37 1 5.0936 0.9395 -2.9858 38 1 4.6007 2.3881 -2.0764 39 1 2.2349 1.9749 -2.7174 40 1 2.7428 0.5435 -3.6455 41 1 4.2374 2.7640 -4.5461 42 1 4.7504 3.8327 -5.9321 43 1 5.2795 5.2655 -7.8314 44 1 -0.1372 3.8386 -10.5649 45 1 -0.6333 4.5817 -9.0254 46 1 -0.5213 5.5753 -10.4979 47 1 0.7341 3.3476 -7.3620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734578776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:02 Heat of formation + Delta-G solvation = 76.398028 kcal Electronic energy + Delta-G solvation = -29918.861698 eV Core-core repulsion = 25719.787442 eV Total energy + Delta-G solvation = -4199.074256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.53725 -40.00636 -37.77052 -37.40153 -35.95435 -35.25087 -34.40618 -31.74022 -31.21674 -31.13865 -29.64654 -28.35078 -27.77696 -25.66444 -25.04554 -23.89596 -23.51181 -22.08293 -21.51614 -20.97302 -20.47794 -18.51934 -18.06417 -17.10398 -16.88199 -16.77432 -16.17451 -15.88967 -15.38622 -15.16976 -14.94667 -14.68367 -14.62691 -14.26392 -14.01462 -13.97046 -13.73971 -13.58561 -13.37890 -13.25553 -12.64032 -12.53235 -12.47246 -12.26194 -12.08995 -11.90229 -11.69901 -11.20083 -11.17652 -11.07902 -11.01174 -10.73460 -10.66087 -10.28150 -10.03683 -9.77293 -9.56407 -9.37726 -8.98109 -8.78795 -8.65881 -8.44544 -6.89652 -5.90798 -3.33736 -0.00433 0.79738 1.74435 1.78911 2.73400 3.11093 3.34465 3.48379 3.49672 3.51218 3.58295 4.01147 4.24581 4.43090 4.50433 4.57185 4.59951 4.63913 4.65352 4.79731 4.92327 4.94546 4.97941 5.43541 5.47969 5.59404 5.62233 5.64967 5.74667 5.79347 5.84007 5.84496 5.92137 5.99697 6.05560 6.08789 6.13469 6.17482 6.19708 6.29429 6.47509 6.51659 6.71299 6.77433 7.54881 7.92685 7.95871 8.11623 8.21412 8.43982 8.98424 9.76939 10.10105 11.24828 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.002183 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.951666 B =12822.358508 C =13669.007469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.260 4.260 7 H 0.077 0.923 8 C 0.046 3.954 9 N -0.893 5.893 10 Si 0.874 3.126 11 H -0.286 1.286 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.139 3.861 15 C 0.095 3.905 16 N -0.715 5.715 17 C 0.554 3.446 18 O -0.536 6.536 19 C -0.097 4.097 20 C -0.090 4.090 21 C -0.054 4.054 22 C 0.026 3.974 23 N -0.258 5.258 24 N -0.017 5.017 25 N -0.315 5.315 26 C 0.085 3.915 27 C 0.013 3.987 28 C -0.035 4.035 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.261 0.739 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.397 0.603 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 17.086 -14.039 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.036 4.036 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.388 4.388 7 H 0.094 0.906 8 C -0.155 4.155 9 N -0.533 5.533 10 Si 0.704 3.296 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.030 4.030 16 N -0.366 5.366 17 C 0.340 3.660 18 O -0.414 6.414 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.076 4.076 22 C -0.100 4.100 23 N -0.132 5.132 24 N 0.002 4.998 25 N -0.116 5.116 26 C -0.056 4.056 27 C -0.105 4.105 28 C -0.058 4.058 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.232 0.768 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.167 17.218 -15.105 23.720 hybrid contribution 0.242 0.124 1.600 1.623 sum -5.925 17.342 -13.506 22.765 Atomic orbital electron populations 1.22649 0.83732 1.01914 0.98312 1.88299 1.16959 1.26305 1.94794 1.23330 0.97278 0.85267 0.97685 1.21400 0.90465 0.96590 0.90944 1.43893 1.76122 1.03860 1.07320 1.18552 1.38720 0.79495 1.02005 0.90593 1.25315 0.97772 0.94808 0.97572 1.69888 1.44595 1.08388 1.30448 0.86994 0.81120 0.79290 0.82150 1.21470 1.23103 1.19614 1.21012 0.93680 0.94574 0.89571 1.22480 1.00934 0.94128 0.85451 1.45999 1.14275 1.51281 1.25032 1.18005 0.85010 0.80800 0.82209 1.90800 1.22036 1.52028 1.76565 1.19873 0.94160 1.00214 0.96164 1.20936 0.95717 0.96462 0.98040 1.19931 0.98409 0.97770 0.91534 1.20097 0.93848 0.99744 0.96294 1.75370 1.10391 1.19648 1.07782 1.77995 0.96299 1.08102 1.17394 1.47136 1.12546 1.35371 1.16526 1.22306 0.74613 1.04224 1.04418 1.19622 0.93312 1.04129 0.93471 1.20068 1.00619 0.95177 0.89934 0.95638 0.95113 0.90299 0.95453 0.94332 0.91757 0.92666 0.92905 0.91933 0.93862 0.91940 0.90798 0.76774 0.83934 0.83682 0.88901 0.88108 0.87717 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.70 10.18 -35.23 -0.36 -8.06 16 3 C 0.04 0.84 6.28 37.16 0.23 1.07 16 4 C 0.13 2.71 4.98 -4.04 -0.02 2.69 16 5 N -0.59 -13.02 2.06 -173.24 -0.36 -13.38 16 6 C -0.26 -6.97 9.42 -15.05 -0.14 -7.11 16 7 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 8 C 0.05 1.31 5.30 -17.43 -0.09 1.21 16 9 N -0.89 -27.07 13.97 55.49 0.78 -26.29 16 10 Si 0.87 21.62 25.07 -169.99 -4.26 17.36 16 11 H -0.29 -7.00 6.66 56.52 0.38 -6.62 16 12 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.14 2.38 5.83 -4.05 -0.02 2.36 16 15 C 0.10 1.56 5.99 -4.05 -0.02 1.54 16 16 N -0.71 -9.05 5.50 -61.30 -0.34 -9.38 16 17 C 0.55 7.60 7.77 -12.39 -0.10 7.51 16 18 O -0.54 -9.45 16.32 5.30 0.09 -9.36 16 19 C -0.10 -1.04 5.88 -104.92 -0.62 -1.66 16 20 C -0.09 -0.75 9.46 -39.57 -0.37 -1.13 16 21 C -0.05 -0.48 10.03 -39.70 -0.40 -0.87 16 22 C 0.03 0.29 7.36 -84.95 -0.63 -0.33 16 23 N -0.26 -3.24 12.42 32.09 0.40 -2.84 16 24 N -0.02 -0.20 13.07 60.35 0.79 0.59 16 25 N -0.32 -2.92 3.80 -65.54 -0.25 -3.17 16 26 C 0.09 0.36 11.40 59.85 0.68 1.04 16 27 C 0.01 0.14 6.93 -84.24 -0.58 -0.45 16 28 C -0.04 -0.37 9.59 -39.10 -0.38 -0.74 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.69 6.30 -51.93 -0.33 0.37 16 34 H 0.06 1.50 3.28 -51.93 -0.17 1.33 16 35 H 0.06 0.95 7.87 -51.93 -0.41 0.54 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.06 1.06 8.07 -51.93 -0.42 0.65 16 38 H 0.04 0.62 7.86 -51.93 -0.41 0.22 16 39 H 0.06 1.10 6.30 -51.93 -0.33 0.77 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.40 3.65 6.47 -40.82 -0.26 3.39 16 42 H 0.14 0.79 6.36 -52.48 -0.33 0.46 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.15 1.40 7.63 -52.49 -0.40 1.00 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -36.55 390.20 -5.42 -41.97 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.45 Total: -0.11 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -1.34 Total: 6.79 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 1.02 Total: -54.47 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.27 Total: -17.42 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.26 Total: 17.36 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.55 -5.42 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734578776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.369 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds