Wall clock time and date at job start Wed Apr 1 2020 05:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00240 * 2 1 4 4 C 1.53000 * 109.47492 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47112 * 64.99441 * 4 3 2 6 6 C 1.36947 * 119.99753 * 270.00182 * 5 4 3 7 7 H 1.08001 * 119.99446 * 142.64786 * 6 5 4 8 8 C 1.38812 * 120.00055 * 322.64262 * 6 5 4 9 9 N 1.31617 * 119.99978 * 157.14399 * 8 6 5 10 10 Si 1.86798 * 120.00120 * 337.14852 * 8 6 5 11 11 H 1.48491 * 109.47368 * 95.36532 * 10 8 6 12 12 H 1.48502 * 109.47288 * 215.36761 * 10 8 6 13 13 H 1.48501 * 109.46898 * 335.36479 * 10 8 6 14 14 C 1.46497 * 120.00178 * 90.00119 * 5 4 3 15 15 C 1.52991 * 109.47303 * 266.84889 * 14 5 4 16 16 N 1.46496 * 109.47456 * 179.05250 * 15 14 5 17 17 C 1.34774 * 120.00546 * 179.97438 * 16 15 14 18 18 O 1.21576 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.47722 * 120.00465 * 179.97438 * 17 16 15 20 20 C 1.40255 * 119.87615 * 0.31900 * 19 17 16 21 21 C 1.36169 * 120.55473 * 180.28938 * 20 19 17 22 22 C 1.39904 * 119.97525 * 359.42630 * 21 20 19 23 23 N 1.34755 * 134.59464 * 180.25616 * 22 21 20 24 24 N 1.28645 * 109.29411 * 180.02562 * 23 22 21 25 25 N 1.28812 * 111.79124 * 0.02562 * 24 23 22 26 26 C 1.46497 * 125.93947 * 180.02562 * 25 24 23 27 27 C 1.37360 * 108.11584 * 359.97438 * 25 24 23 28 28 C 1.38621 * 134.88845 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.47327 * 300.00603 * 1 2 3 30 30 H 1.09005 * 109.46985 * 60.00509 * 1 2 3 31 31 H 1.09002 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47430 * 59.99273 * 3 2 1 33 33 H 1.09003 * 109.46297 * 299.99236 * 3 2 1 34 34 H 1.09001 * 109.46929 * 304.99895 * 4 3 2 35 35 H 1.08996 * 109.47224 * 184.99546 * 4 3 2 36 36 H 0.96996 * 120.00210 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.46813 * 146.84452 * 14 5 4 38 38 H 1.09004 * 109.46868 * 26.84929 * 14 5 4 39 39 H 1.08994 * 109.47343 * 59.04808 * 15 14 5 40 40 H 1.09004 * 109.47118 * 299.04944 * 15 14 5 41 41 H 0.97005 * 120.00148 * 0.02562 * 16 15 14 42 42 H 1.08004 * 119.72602 * 359.97438 * 20 19 17 43 43 H 1.08002 * 120.00781 * 179.70760 * 21 20 19 44 44 H 1.08995 * 109.47648 * 90.02217 * 26 25 24 45 45 H 1.09001 * 109.46738 * 210.02370 * 26 25 24 46 46 H 1.08999 * 109.47392 * 330.01376 * 26 25 24 47 47 H 1.07999 * 120.24536 * 0.06880 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0979 -0.7977 -1.3342 7 1 3.8266 -1.3090 -2.2460 8 6 4.5693 -1.5204 -0.2469 9 7 4.2798 -2.7991 -0.1312 10 14 5.6146 -0.6782 1.0521 11 1 4.7494 -0.2425 2.1776 12 1 6.6398 -1.6278 1.5547 13 1 6.2856 0.5052 0.4567 14 6 4.2884 1.3996 -2.4130 15 6 3.0452 1.5304 -3.2951 16 7 3.3504 2.3845 -4.4455 17 6 2.3991 2.6423 -5.3648 18 8 1.2875 2.1664 -5.2390 19 6 2.7067 3.5041 -6.5245 20 6 3.9916 4.0473 -6.6700 21 6 4.2885 4.8481 -7.7305 22 6 3.3111 5.1252 -8.6924 23 7 3.2797 5.8510 -9.8274 24 7 2.1064 5.7734 -10.3492 25 7 1.3178 5.0371 -9.6454 26 6 -0.0831 4.7391 -9.9531 27 6 2.0193 4.5790 -8.5569 28 6 1.7221 3.7696 -7.4715 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8465 0.8898 33 1 1.6887 1.8462 -0.8901 34 1 3.8508 0.5686 0.8427 35 1 3.9785 2.1766 0.0901 36 1 4.6096 -3.3043 0.6283 37 1 5.0936 0.9395 -2.9858 38 1 4.6007 2.3881 -2.0764 39 1 2.2349 1.9749 -2.7174 40 1 2.7428 0.5435 -3.6455 41 1 4.2374 2.7640 -4.5461 42 1 4.7504 3.8327 -5.9321 43 1 5.2795 5.2655 -7.8314 44 1 -0.1372 3.8386 -10.5649 45 1 -0.6333 4.5817 -9.0254 46 1 -0.5213 5.5753 -10.4979 47 1 0.7341 3.3476 -7.3620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734578776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:01 Heat of formation + Delta-G solvation = 48.083837 kcal Electronic energy + Delta-G solvation = -29920.089494 eV Core-core repulsion = 25719.787442 eV Total energy + Delta-G solvation = -4200.302052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.29897 -41.07101 -39.10887 -38.49665 -37.48750 -35.95760 -35.77062 -33.67297 -32.19770 -31.89848 -30.98861 -29.40229 -28.82664 -27.15524 -26.24106 -25.02617 -24.62870 -23.49032 -22.35771 -22.20053 -21.79225 -19.49661 -18.79405 -18.68907 -17.82164 -17.79042 -17.58693 -17.07162 -16.97869 -16.45032 -16.28260 -15.98178 -15.65119 -15.34451 -15.29403 -15.03409 -14.92374 -14.46122 -14.35842 -14.33762 -14.15040 -13.81100 -13.58934 -13.27173 -13.20266 -13.07299 -12.89626 -12.79652 -12.51700 -12.39393 -12.27159 -11.86262 -11.84423 -11.83636 -11.64853 -11.37642 -11.21330 -10.52465 -10.38051 -10.22658 -9.98328 -9.45320 -8.74019 -8.04592 -5.43531 -0.80976 0.07652 0.95459 1.13827 1.39976 1.48971 1.59643 1.79943 2.04833 2.54873 2.63735 2.83510 3.14350 3.15234 3.43998 3.49542 3.55859 3.68851 3.90814 3.95416 4.14734 4.22676 4.23380 4.30352 4.39600 4.42061 4.43041 4.54090 4.54839 4.59206 4.66314 4.68442 4.78552 4.81353 4.84837 4.87087 5.04408 5.09822 5.12903 5.17317 5.22496 5.39210 5.44417 5.51887 6.04981 6.30126 6.52750 6.58452 7.08572 7.13325 7.18276 7.74987 8.11967 9.15642 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.002183 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.951666 B =12822.358508 C =13669.007469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.043 3.957 4 C 0.122 3.878 5 N -0.603 5.603 6 C -0.235 4.235 7 H 0.029 0.971 8 C -0.017 4.017 9 N -0.950 5.950 10 Si 0.943 3.057 11 H -0.282 1.282 12 H -0.317 1.317 13 H -0.244 1.244 14 C 0.140 3.860 15 C 0.115 3.885 16 N -0.699 5.699 17 C 0.556 3.444 18 O -0.582 6.582 19 C -0.106 4.106 20 C -0.077 4.077 21 C -0.053 4.053 22 C 0.012 3.988 23 N -0.288 5.288 24 N -0.031 5.031 25 N -0.306 5.306 26 C 0.071 3.929 27 C 0.001 3.999 28 C -0.034 4.034 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.257 0.743 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.029 0.971 41 H 0.418 0.582 42 H 0.176 0.824 43 H 0.171 0.829 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 20.399 -13.807 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C -0.036 4.036 4 C -0.003 4.003 5 N -0.325 5.325 6 C -0.365 4.365 7 H 0.047 0.953 8 C -0.213 4.213 9 N -0.595 5.595 10 Si 0.773 3.227 11 H -0.210 1.210 12 H -0.247 1.247 13 H -0.167 1.167 14 C 0.013 3.987 15 C -0.012 4.012 16 N -0.352 5.352 17 C 0.344 3.656 18 O -0.463 6.463 19 C -0.113 4.113 20 C -0.098 4.098 21 C -0.075 4.075 22 C -0.115 4.115 23 N -0.162 5.162 24 N -0.011 5.011 25 N -0.107 5.107 26 C -0.068 4.068 27 C -0.118 4.118 28 C -0.056 4.056 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.257 0.743 42 H 0.193 0.807 43 H 0.189 0.811 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.141 0.859 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.341 20.620 -14.914 26.003 hybrid contribution -0.185 -0.878 1.378 1.644 sum -5.527 19.742 -13.537 24.567 Atomic orbital electron populations 1.22762 0.81648 1.02340 0.99945 1.88221 1.19544 1.28625 1.95195 1.23375 0.96286 0.84420 0.99499 1.21596 0.91748 0.97976 0.88945 1.43971 1.76647 1.02529 1.09341 1.18316 1.36357 0.81977 0.99881 0.95294 1.25967 0.99516 0.95323 1.00474 1.70052 1.47045 1.10542 1.31827 0.85869 0.78807 0.78543 0.79511 1.21017 1.24661 1.16686 1.21171 0.93609 0.95877 0.87999 1.21965 1.00432 0.92502 0.86261 1.45713 1.15264 1.50435 1.23796 1.18401 0.84277 0.80324 0.82638 1.90782 1.23988 1.53883 1.77629 1.19674 0.95586 1.00749 0.95283 1.21186 0.95095 0.95184 0.98365 1.20249 0.99064 0.97464 0.90738 1.20564 0.94835 0.99656 0.96449 1.75322 1.11120 1.20971 1.08760 1.77915 0.96551 1.08780 1.17892 1.47540 1.13642 1.33930 1.15597 1.22770 0.72406 1.05742 1.05860 1.19691 0.93577 1.04566 0.93957 1.20092 1.00786 0.94921 0.89835 0.92900 0.94364 0.90672 0.92495 0.93385 0.94446 0.88158 0.93437 0.91811 0.89252 0.92777 0.95230 0.74325 0.80708 0.81124 0.87334 0.86587 0.85892 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 11.01 113.37 1.25 2.25 16 2 O -0.40 -17.56 10.18 -148.98 -1.52 -19.08 16 3 C 0.04 1.53 6.28 71.98 0.45 1.98 16 4 C 0.12 4.67 4.98 86.38 0.43 5.10 16 5 N -0.60 -25.64 2.06 -702.01 -1.45 -27.09 16 6 C -0.24 -12.89 9.42 84.03 0.79 -12.09 16 7 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 8 C -0.02 -0.98 5.30 84.86 0.45 -0.53 16 9 N -0.95 -60.10 13.97 21.65 0.30 -59.80 16 10 Si 0.94 44.81 25.07 68.60 1.72 46.53 16 11 H -0.28 -13.07 6.66 99.48 0.66 -12.41 16 12 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 13 H -0.24 -10.32 7.11 99.48 0.71 -9.61 16 14 C 0.14 4.39 5.83 86.38 0.50 4.90 16 15 C 0.11 3.65 5.99 86.38 0.52 4.16 16 16 N -0.70 -16.15 5.50 -466.11 -2.57 -18.71 16 17 C 0.56 14.56 7.77 86.75 0.67 15.24 16 18 O -0.58 -20.55 16.32 -3.96 -0.06 -20.61 16 19 C -0.11 -2.08 5.88 -20.06 -0.12 -2.20 16 20 C -0.08 -1.04 9.46 22.28 0.21 -0.83 16 21 C -0.05 -0.79 10.03 22.19 0.22 -0.57 16 22 C 0.01 0.24 7.36 39.75 0.29 0.54 16 23 N -0.29 -7.03 12.42 -52.38 -0.65 -7.68 16 24 N -0.03 -0.68 13.07 37.02 0.48 -0.19 16 25 N -0.31 -5.32 3.80 -361.28 -1.37 -6.69 16 26 C 0.07 0.48 11.40 127.77 1.46 1.94 16 27 C 0.00 0.02 6.93 39.02 0.27 0.30 16 28 C -0.03 -0.66 9.59 22.58 0.22 -0.44 16 29 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.61 6.30 -2.39 -0.02 1.60 16 34 H 0.04 1.65 3.28 -2.39 -0.01 1.64 16 35 H 0.10 2.90 7.87 -2.39 -0.02 2.88 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 38 H 0.09 2.08 7.86 -2.38 -0.02 2.06 16 39 H 0.05 1.83 6.30 -2.39 -0.02 1.81 16 40 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.42 6.07 6.47 -92.70 -0.60 5.47 16 42 H 0.18 1.12 6.36 -2.91 -0.02 1.10 16 43 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.15 2.76 7.63 -2.91 -0.02 2.74 16 Total: -1.00 -84.77 390.20 2.87 -81.89 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.37 Total: 11.70 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 7.62 Total: 19.74 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -5.25 Total: -120.17 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.58 Total: -39.69 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.72 Total: 46.53 kcal Total: -84.77 2.87 -81.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734578776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.977 kcal (2) G-P(sol) polarization free energy of solvation -84.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds