Wall clock time and date at job start Wed Apr 1 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00061 * 2 1 4 4 C 1.52997 * 109.47265 * 270.00410 * 3 2 1 5 5 O 1.42905 * 109.47052 * 64.99956 * 4 3 2 6 6 C 1.42897 * 113.99779 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47071 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47019 * 65.00127 * 7 6 5 9 9 C 1.36931 * 119.99696 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00846 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99740 * 179.97438 * 9 8 7 12 12 N 1.31614 * 120.00140 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99983 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47132 * 90.00286 * 13 11 9 15 15 H 1.48502 * 109.47216 * 209.99988 * 13 11 9 16 16 H 1.48502 * 109.47120 * 330.00307 * 13 11 9 17 17 C 1.34774 * 120.00443 * 180.02562 * 2 1 3 18 18 O 1.21575 * 120.00589 * 184.84900 * 17 2 1 19 19 C 1.47695 * 119.99695 * 4.84656 * 17 2 1 20 20 C 1.40181 * 120.40565 * 141.37738 * 19 17 2 21 21 N 1.31193 * 121.37177 * 179.70144 * 20 19 17 22 22 C 1.32927 * 121.84784 * 0.27696 * 21 20 19 23 23 C 1.41074 * 120.19679 * 359.97438 * 22 21 20 24 24 C 1.45973 * 106.42906 * 179.97438 * 23 22 21 25 25 N 1.30205 * 107.58832 * 0.02562 * 24 23 22 26 26 N 1.36630 * 133.27259 * 179.97438 * 22 21 20 27 27 C 1.46497 * 125.33976 * 359.97438 * 26 22 21 28 28 C 1.39507 * 120.41260 * 321.64436 * 19 17 2 29 29 H 1.09002 * 109.47245 * 264.93403 * 1 2 3 30 30 H 1.08998 * 109.47684 * 24.93591 * 1 2 3 31 31 H 1.09001 * 109.46873 * 144.93715 * 1 2 3 32 32 H 1.09006 * 109.46464 * 30.00615 * 3 2 1 33 33 H 1.09001 * 109.47190 * 150.00083 * 3 2 1 34 34 H 1.09007 * 109.47118 * 184.99443 * 4 3 2 35 35 H 1.08993 * 109.47307 * 304.99527 * 4 3 2 36 36 H 1.08996 * 109.47532 * 300.00013 * 6 5 4 37 37 H 1.09004 * 109.46931 * 60.00041 * 6 5 4 38 38 H 1.09006 * 109.47019 * 185.00439 * 7 6 5 39 39 H 1.09006 * 109.46989 * 305.00116 * 7 6 5 40 40 H 0.96991 * 120.00014 * 0.02562 * 8 7 6 41 41 H 0.96996 * 120.00330 * 179.97438 * 12 11 9 42 42 H 1.07999 * 119.31618 * 359.97438 * 20 19 17 43 43 H 1.07999 * 126.20672 * 179.97438 * 24 23 22 44 44 H 1.09009 * 109.46949 * 90.00172 * 27 26 22 45 45 H 1.09000 * 109.47487 * 210.00063 * 27 26 22 46 46 H 1.09001 * 109.47404 * 330.00799 * 27 26 22 47 47 H 1.08003 * 121.02343 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 8 1.2059 1.9937 -2.0813 6 6 1.3323 2.4177 -3.4400 7 6 -0.0568 2.6907 -4.0204 8 7 -0.6664 3.8218 -3.3165 9 6 -1.9190 4.2508 -3.6658 10 1 -2.4578 3.7551 -4.4598 11 6 -2.4969 5.3221 -2.9985 12 7 -1.8410 5.9252 -2.0298 13 14 -4.2054 5.9078 -3.4754 14 1 -5.2203 5.1805 -2.6716 15 1 -4.3196 7.3654 -3.2151 16 1 -4.4345 5.6432 -4.9186 17 6 2.1389 -1.1671 -0.0005 18 8 3.3514 -1.1691 0.0885 19 6 1.4044 -2.4439 -0.1092 20 6 1.9234 -3.4981 -0.8736 21 7 1.2899 -4.6421 -0.9784 22 6 0.1264 -4.8577 -0.3727 23 6 -0.4641 -3.8441 0.4109 24 6 -1.7140 -4.3953 0.9254 25 7 -1.8223 -5.6121 0.4747 26 7 -0.7182 -5.9304 -0.3214 27 6 -0.5012 -7.2127 -0.9958 28 6 0.1830 -2.6137 0.5431 29 1 -0.3634 -0.0907 1.0237 30 1 -0.3634 0.9318 -0.4332 31 1 -0.3633 -0.8412 -0.5904 32 1 1.6084 2.0283 0.5140 33 1 3.1499 1.1384 0.5138 34 1 3.0731 2.6066 -1.4437 35 1 2.9642 0.9133 -1.9815 36 1 1.9295 3.3285 -3.4824 37 1 1.8209 1.6354 -4.0208 38 1 0.0325 2.9280 -5.0805 39 1 -0.6822 1.8065 -3.8974 40 1 -0.1828 4.2667 -2.6032 41 1 -2.2446 6.6740 -1.5638 42 1 2.8665 -3.3674 -1.3833 43 1 -2.4203 -3.8866 1.5646 44 1 0.0493 -7.8823 -0.3348 45 1 -1.4636 -7.6593 -1.2458 46 1 0.0723 -7.0509 -1.9085 47 1 -0.2461 -1.8200 1.1367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734616462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:46 Heat of formation + Delta-G solvation = 55.613915 kcal Electronic energy + Delta-G solvation = -29963.799743 eV Core-core repulsion = 25763.824220 eV Total energy + Delta-G solvation = -4199.975523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.99574 -40.20118 -38.22004 -37.61160 -35.74712 -34.50382 -34.17240 -32.43616 -31.42051 -30.70571 -29.72417 -27.65389 -27.41478 -26.54928 -24.36314 -24.22003 -23.50393 -22.51154 -21.33133 -21.14063 -19.83192 -18.31610 -17.51044 -17.16956 -17.09732 -16.42192 -16.26092 -16.19217 -15.79282 -15.63578 -15.16412 -14.60895 -14.46379 -14.18579 -14.04957 -13.85297 -13.66202 -13.42578 -13.09893 -13.00905 -12.93182 -12.83515 -12.67628 -12.60625 -12.13892 -11.79198 -11.65798 -11.54368 -11.41743 -10.92237 -10.81253 -10.77484 -10.50154 -10.30679 -10.02200 -9.75748 -9.68933 -9.43187 -9.24090 -8.87515 -8.78389 -8.63310 -6.88512 -5.73708 -3.01658 0.36565 0.56766 1.72835 2.03483 2.52691 2.85928 3.42231 3.44125 3.49360 3.50997 3.74226 3.82914 3.99866 4.16195 4.29682 4.43501 4.61308 4.64996 4.83818 4.92332 5.00130 5.08933 5.11461 5.12741 5.16534 5.27372 5.41718 5.45460 5.54064 5.56592 5.58153 5.63213 5.71097 5.77475 5.84031 5.91611 5.99241 6.01817 6.34340 6.35275 6.41696 6.60977 6.74967 6.99622 7.21682 7.48889 7.58099 7.71327 7.98102 8.45012 9.56638 10.15202 10.51423 11.49100 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.002436 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.913078 B =11491.209408 C =12948.421368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.597 5.597 3 C 0.119 3.881 4 C 0.044 3.956 5 O -0.371 6.371 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.238 4.238 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.283 1.283 17 C 0.570 3.430 18 O -0.540 6.540 19 C -0.225 4.225 20 C 0.225 3.775 21 N -0.506 5.506 22 C 0.328 3.672 23 C -0.238 4.238 24 C 0.096 3.904 25 N -0.240 5.240 26 N -0.394 5.394 27 C 0.111 3.889 28 C 0.040 3.960 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.175 0.825 43 H 0.206 0.794 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 -22.434 6.618 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.328 5.328 3 C -0.003 4.003 4 C -0.034 4.034 5 O -0.290 6.290 6 C -0.018 4.018 7 C 0.027 3.973 8 N -0.371 5.371 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.581 5.581 13 Si 0.737 3.263 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.357 3.643 18 O -0.418 6.418 19 C -0.232 4.232 20 C 0.055 3.945 21 N -0.221 5.221 22 C 0.089 3.911 23 C -0.248 4.248 24 C -0.103 4.103 25 N -0.052 5.052 26 N -0.184 5.184 27 C -0.030 4.030 28 C 0.012 3.988 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.191 0.809 43 H 0.223 0.777 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.389 -24.412 6.075 25.955 hybrid contribution -0.532 1.837 0.238 1.928 sum 5.857 -22.575 6.313 24.162 Atomic orbital electron populations 1.22245 0.78682 1.05494 1.00849 1.47647 1.07624 1.05451 1.72078 1.21618 0.98446 0.84407 0.95859 1.22865 0.87633 0.99145 0.93749 1.87993 1.27782 1.87481 1.25732 1.22771 0.99230 0.97431 0.82337 1.20685 0.90239 0.91867 0.94501 1.42279 1.17660 1.34936 1.42273 1.19232 0.92587 1.10796 1.14285 0.91321 1.24722 0.98578 0.98952 0.98765 1.69665 1.37715 1.24998 1.25730 0.86210 0.84503 0.77798 0.77797 1.21761 1.21818 1.20841 1.17931 0.86781 0.83085 0.76463 1.90784 1.13396 1.87251 1.50405 1.20602 0.98043 0.97398 1.07153 1.22772 0.96660 0.84578 0.90521 1.66765 1.07054 1.23972 1.24271 1.19164 0.90406 0.88115 0.93439 1.20438 0.99562 0.96776 1.07975 1.25167 0.95384 0.91147 0.98580 1.76750 1.05018 1.16234 1.07195 1.48127 1.15221 1.11886 1.43183 1.21851 1.03383 0.80763 0.97038 1.21646 0.90455 0.94499 0.92191 0.92498 0.88351 0.91103 0.88883 0.88350 0.92437 0.93556 0.93373 0.94022 0.95129 0.95721 0.77929 0.93604 0.80851 0.77712 0.90992 0.89261 0.89035 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 8.65 59.85 0.52 1.25 16 2 N -0.60 -7.04 2.84 -182.75 -0.52 -7.56 16 3 C 0.12 1.41 5.83 -4.04 -0.02 1.39 16 4 C 0.04 0.59 6.28 37.16 0.23 0.82 16 5 O -0.37 -6.15 9.21 -35.23 -0.32 -6.48 16 6 C 0.06 0.98 6.07 37.16 0.23 1.21 16 7 C 0.15 3.14 6.64 -4.04 -0.03 3.12 16 8 N -0.73 -18.52 5.55 -59.90 -0.33 -18.85 16 9 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 10 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 13 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.57 7.16 7.37 -12.40 -0.09 7.07 16 18 O -0.54 -8.18 16.46 5.30 0.09 -8.09 16 19 C -0.22 -2.47 5.27 -104.83 -0.55 -3.03 16 20 C 0.22 2.49 10.77 -17.10 -0.18 2.30 16 21 N -0.51 -5.95 10.37 -12.03 -0.12 -6.08 16 22 C 0.33 3.77 7.96 -156.09 -1.24 2.53 16 23 C -0.24 -2.39 6.36 -105.20 -0.67 -3.06 16 24 C 0.10 0.80 12.30 -15.15 -0.19 0.61 16 25 N -0.24 -2.44 12.39 31.87 0.39 -2.05 16 26 N -0.39 -4.08 4.03 -67.17 -0.27 -4.35 16 27 C 0.11 0.75 11.43 59.85 0.68 1.43 16 28 C 0.04 0.38 7.73 -38.58 -0.30 0.08 16 29 H 0.06 0.45 6.87 -51.93 -0.36 0.09 16 30 H 0.10 1.29 7.22 -51.93 -0.37 0.92 16 31 H 0.07 0.71 5.83 -51.93 -0.30 0.41 16 32 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 33 H 0.10 1.11 7.36 -51.93 -0.38 0.72 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.39 10.43 7.67 -40.82 -0.31 10.11 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.17 1.67 8.04 -52.49 -0.42 1.24 16 43 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.16 1.08 5.29 -52.48 -0.28 0.80 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -35.77 396.75 -7.89 -43.66 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.62 Total: 5.47 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -1.86 Total: 8.41 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -0.13 Total: -66.22 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.24 Total: -14.57 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.77 -7.89 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734616462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.277 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds