Wall clock time and date at job start Wed Apr 1 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00061 * 2 1 4 4 C 1.52997 * 109.47265 * 270.00410 * 3 2 1 5 5 O 1.42905 * 109.47052 * 64.99956 * 4 3 2 6 6 C 1.42897 * 113.99779 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47071 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47019 * 65.00127 * 7 6 5 9 9 C 1.36931 * 119.99696 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00846 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99740 * 179.97438 * 9 8 7 12 12 N 1.31614 * 120.00140 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99983 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47132 * 90.00286 * 13 11 9 15 15 H 1.48502 * 109.47216 * 209.99988 * 13 11 9 16 16 H 1.48502 * 109.47120 * 330.00307 * 13 11 9 17 17 C 1.34774 * 120.00443 * 180.02562 * 2 1 3 18 18 O 1.21575 * 120.00589 * 184.84900 * 17 2 1 19 19 C 1.47695 * 119.99695 * 4.84656 * 17 2 1 20 20 C 1.40181 * 120.40565 * 141.37738 * 19 17 2 21 21 N 1.31193 * 121.37177 * 179.70144 * 20 19 17 22 22 C 1.32927 * 121.84784 * 0.27696 * 21 20 19 23 23 C 1.41074 * 120.19679 * 359.97438 * 22 21 20 24 24 C 1.45973 * 106.42906 * 179.97438 * 23 22 21 25 25 N 1.30205 * 107.58832 * 0.02562 * 24 23 22 26 26 N 1.36630 * 133.27259 * 179.97438 * 22 21 20 27 27 C 1.46497 * 125.33976 * 359.97438 * 26 22 21 28 28 C 1.39507 * 120.41260 * 321.64436 * 19 17 2 29 29 H 1.09002 * 109.47245 * 264.93403 * 1 2 3 30 30 H 1.08998 * 109.47684 * 24.93591 * 1 2 3 31 31 H 1.09001 * 109.46873 * 144.93715 * 1 2 3 32 32 H 1.09006 * 109.46464 * 30.00615 * 3 2 1 33 33 H 1.09001 * 109.47190 * 150.00083 * 3 2 1 34 34 H 1.09007 * 109.47118 * 184.99443 * 4 3 2 35 35 H 1.08993 * 109.47307 * 304.99527 * 4 3 2 36 36 H 1.08996 * 109.47532 * 300.00013 * 6 5 4 37 37 H 1.09004 * 109.46931 * 60.00041 * 6 5 4 38 38 H 1.09006 * 109.47019 * 185.00439 * 7 6 5 39 39 H 1.09006 * 109.46989 * 305.00116 * 7 6 5 40 40 H 0.96991 * 120.00014 * 0.02562 * 8 7 6 41 41 H 0.96996 * 120.00330 * 179.97438 * 12 11 9 42 42 H 1.07999 * 119.31618 * 359.97438 * 20 19 17 43 43 H 1.07999 * 126.20672 * 179.97438 * 24 23 22 44 44 H 1.09009 * 109.46949 * 90.00172 * 27 26 22 45 45 H 1.09000 * 109.47487 * 210.00063 * 27 26 22 46 46 H 1.09001 * 109.47404 * 330.00799 * 27 26 22 47 47 H 1.08003 * 121.02343 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 8 1.2059 1.9937 -2.0813 6 6 1.3323 2.4177 -3.4400 7 6 -0.0568 2.6907 -4.0204 8 7 -0.6664 3.8218 -3.3165 9 6 -1.9190 4.2508 -3.6658 10 1 -2.4578 3.7551 -4.4598 11 6 -2.4969 5.3221 -2.9985 12 7 -1.8410 5.9252 -2.0298 13 14 -4.2054 5.9078 -3.4754 14 1 -5.2203 5.1805 -2.6716 15 1 -4.3196 7.3654 -3.2151 16 1 -4.4345 5.6432 -4.9186 17 6 2.1389 -1.1671 -0.0005 18 8 3.3514 -1.1691 0.0885 19 6 1.4044 -2.4439 -0.1092 20 6 1.9234 -3.4981 -0.8736 21 7 1.2899 -4.6421 -0.9784 22 6 0.1264 -4.8577 -0.3727 23 6 -0.4641 -3.8441 0.4109 24 6 -1.7140 -4.3953 0.9254 25 7 -1.8223 -5.6121 0.4747 26 7 -0.7182 -5.9304 -0.3214 27 6 -0.5012 -7.2127 -0.9958 28 6 0.1830 -2.6137 0.5431 29 1 -0.3634 -0.0907 1.0237 30 1 -0.3634 0.9318 -0.4332 31 1 -0.3633 -0.8412 -0.5904 32 1 1.6084 2.0283 0.5140 33 1 3.1499 1.1384 0.5138 34 1 3.0731 2.6066 -1.4437 35 1 2.9642 0.9133 -1.9815 36 1 1.9295 3.3285 -3.4824 37 1 1.8209 1.6354 -4.0208 38 1 0.0325 2.9280 -5.0805 39 1 -0.6822 1.8065 -3.8974 40 1 -0.1828 4.2667 -2.6032 41 1 -2.2446 6.6740 -1.5638 42 1 2.8665 -3.3674 -1.3833 43 1 -2.4203 -3.8866 1.5646 44 1 0.0493 -7.8823 -0.3348 45 1 -1.4636 -7.6593 -1.2458 46 1 0.0723 -7.0509 -1.9085 47 1 -0.2461 -1.8200 1.1367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734616462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:43 Heat of formation + Delta-G solvation = 31.113623 kcal Electronic energy + Delta-G solvation = -29964.862155 eV Core-core repulsion = 25763.824220 eV Total energy + Delta-G solvation = -4201.037935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.74163 -41.12430 -39.19228 -38.70528 -36.86221 -36.18074 -34.97546 -33.52126 -33.00291 -31.52630 -30.85253 -29.24356 -28.12985 -27.41661 -25.52318 -25.16118 -25.02589 -23.42845 -22.76426 -22.02263 -20.72789 -19.21756 -19.08112 -18.36318 -18.02327 -17.43844 -17.29787 -17.08288 -16.81909 -16.58589 -16.45669 -16.06891 -15.53972 -15.26301 -15.07763 -14.77952 -14.74187 -14.54414 -14.39475 -14.24824 -14.03944 -13.76653 -13.47878 -13.31857 -13.27162 -13.11632 -12.86049 -12.73218 -12.68707 -12.52762 -12.27056 -12.11906 -11.89237 -11.67206 -11.54850 -11.22234 -10.93764 -10.62028 -10.45287 -10.20742 -9.72196 -9.40252 -8.95058 -7.90176 -5.18449 -0.36637 -0.25370 1.06721 1.36040 1.50204 1.51598 1.59180 1.59983 1.95401 2.59388 2.60236 2.81118 3.02157 3.14418 3.40885 3.43549 3.54798 3.69784 3.93100 3.98718 4.09613 4.18172 4.27777 4.32201 4.34529 4.35941 4.38355 4.44875 4.48943 4.52108 4.59542 4.62489 4.64567 4.69487 4.80664 4.87520 4.99695 5.07190 5.10065 5.16157 5.33964 5.46800 5.52174 5.65475 6.24366 6.29552 6.31493 6.39997 6.70857 7.02644 7.38362 8.13994 8.39086 9.33236 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.002436 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.913078 B =11491.209408 C =12948.421368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.596 5.596 3 C 0.120 3.880 4 C 0.044 3.956 5 O -0.390 6.390 6 C 0.067 3.933 7 C 0.152 3.848 8 N -0.738 5.738 9 C -0.245 4.245 10 H 0.074 0.926 11 C -0.074 4.074 12 N -0.967 5.967 13 Si 0.972 3.028 14 H -0.286 1.286 15 H -0.296 1.296 16 H -0.271 1.271 17 C 0.573 3.427 18 O -0.571 6.571 19 C -0.238 4.238 20 C 0.219 3.781 21 N -0.522 5.522 22 C 0.307 3.693 23 C -0.248 4.248 24 C 0.110 3.890 25 N -0.263 5.263 26 N -0.403 5.403 27 C 0.104 3.896 28 C 0.055 3.945 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.022 0.978 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.180 0.820 43 H 0.247 0.753 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 -23.078 6.881 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.327 5.327 3 C -0.003 4.003 4 C -0.033 4.033 5 O -0.309 6.309 6 C -0.009 4.009 7 C 0.025 3.975 8 N -0.382 5.382 9 C -0.376 4.376 10 H 0.092 0.908 11 C -0.266 4.266 12 N -0.618 5.618 13 Si 0.801 3.199 14 H -0.213 1.213 15 H -0.223 1.223 16 H -0.196 1.196 17 C 0.362 3.638 18 O -0.452 6.452 19 C -0.246 4.246 20 C 0.049 3.951 21 N -0.237 5.237 22 C 0.067 3.933 23 C -0.258 4.258 24 C -0.089 4.089 25 N -0.075 5.075 26 N -0.192 5.192 27 C -0.036 4.036 28 C 0.028 3.972 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.197 0.803 43 H 0.262 0.738 44 H 0.100 0.900 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.284 -25.105 6.305 26.418 hybrid contribution -0.172 1.957 0.138 1.969 sum 5.112 -23.148 6.443 24.565 Atomic orbital electron populations 1.22297 0.77846 1.04201 1.02674 1.47711 1.08158 1.05237 1.71546 1.21623 0.98976 0.84596 0.95064 1.22986 0.86552 0.99599 0.94170 1.87965 1.29679 1.87585 1.25720 1.22619 0.96924 0.98458 0.82936 1.20844 0.91995 0.89933 0.94706 1.42456 1.17172 1.36158 1.42379 1.19622 0.93564 1.10549 1.13902 0.90846 1.25528 1.02392 0.99527 0.99176 1.69819 1.39342 1.25554 1.27048 0.85170 0.80048 0.76744 0.77961 1.21282 1.22253 1.19644 1.18078 0.86407 0.83556 0.75777 1.90763 1.14727 1.87685 1.52019 1.20500 0.98937 0.96722 1.08418 1.22913 0.96926 0.84608 0.90685 1.66758 1.07630 1.24268 1.25039 1.19513 0.90668 0.89193 0.93949 1.20701 1.00350 0.96725 1.08071 1.25857 0.94944 0.90370 0.97690 1.76743 1.05366 1.17301 1.08045 1.48458 1.15045 1.12448 1.43286 1.22059 1.04414 0.79955 0.97170 1.21860 0.89428 0.94795 0.91168 0.89345 0.91014 0.90622 0.88578 0.87644 0.91444 0.93564 0.93410 0.91201 0.94236 0.95992 0.79171 0.94057 0.80328 0.73754 0.89997 0.87851 0.88924 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 8.65 127.77 1.10 2.50 16 2 N -0.60 -13.37 2.84 -850.36 -2.41 -15.79 16 3 C 0.12 2.74 5.83 86.38 0.50 3.24 16 4 C 0.04 1.14 6.28 71.98 0.45 1.59 16 5 O -0.39 -12.63 9.21 -148.98 -1.37 -14.00 16 6 C 0.07 2.15 6.07 71.98 0.44 2.59 16 7 C 0.15 6.03 6.64 86.38 0.57 6.60 16 8 N -0.74 -37.53 5.55 -343.43 -1.91 -39.44 16 9 C -0.24 -13.60 9.99 84.04 0.84 -12.76 16 10 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 11 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 12 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 13 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 17 C 0.57 13.94 7.37 86.74 0.64 14.58 16 18 O -0.57 -17.15 16.46 -3.95 -0.07 -17.21 16 19 C -0.24 -5.04 5.27 -20.00 -0.11 -5.14 16 20 C 0.22 4.82 10.77 85.26 0.92 5.74 16 21 N -0.52 -12.22 10.37 -191.96 -1.99 -14.21 16 22 C 0.31 6.83 7.96 134.18 1.07 7.90 16 23 C -0.25 -4.56 6.36 -20.24 -0.13 -4.69 16 24 C 0.11 1.55 12.30 86.94 1.07 2.62 16 25 N -0.26 -4.92 12.39 -53.08 -0.66 -5.58 16 26 N -0.40 -7.99 4.03 -366.43 -1.48 -9.47 16 27 C 0.10 1.34 11.43 127.77 1.46 2.80 16 28 C 0.06 0.93 7.73 22.92 0.18 1.10 16 29 H 0.09 1.14 6.87 -2.39 -0.02 1.13 16 30 H 0.07 1.84 7.22 -2.39 -0.02 1.82 16 31 H 0.08 1.39 5.83 -2.39 -0.01 1.38 16 32 H 0.10 2.14 8.07 -2.38 -0.02 2.12 16 33 H 0.11 2.28 7.36 -2.39 -0.02 2.26 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.38 20.46 7.67 -92.72 -0.71 19.75 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.18 3.52 8.04 -2.91 -0.02 3.49 16 43 H 0.25 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.18 1.94 5.29 -2.91 -0.02 1.93 16 Total: -1.00 -76.57 396.75 2.20 -74.37 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.30 Total: 27.08 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 9.47 Total: 24.92 kcal Atomic # 7 Polarization: -134.60 SS G_CDS: -8.16 Total: -142.77 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.44 Total: -31.22 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -76.57 2.20 -74.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734616462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.484 kcal (2) G-P(sol) polarization free energy of solvation -76.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds