Wall clock time and date at job start Wed Apr 1 2020 04:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.36931 * 120.00290 * 275.30980 * 3 2 1 5 5 H 1.07995 * 120.00489 * 37.57276 * 4 3 2 6 6 C 1.38817 * 120.00055 * 217.57558 * 4 3 2 7 7 N 1.31625 * 119.99905 * 21.43262 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 201.43172 * 6 4 3 9 9 H 1.48494 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46871 * 120.00090 * 8 6 4 11 11 H 1.48500 * 109.47021 * 240.00114 * 8 6 4 12 12 C 1.46502 * 119.99629 * 95.30874 * 3 2 1 13 13 C 1.53004 * 109.47073 * 269.99956 * 12 3 2 14 14 C 1.53005 * 109.46874 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46716 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99809 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00071 * 180.27805 * 16 15 14 19 19 C 1.50694 * 109.46974 * 179.72378 * 18 16 15 20 20 C 1.34246 * 126.49474 * 265.01738 * 19 18 16 21 21 N 1.36806 * 109.92879 * 179.97438 * 20 19 18 22 22 H 0.97005 * 125.06612 * 180.02562 * 21 20 19 23 23 C 1.37812 * 109.86772 * 0.02562 * 21 20 19 24 24 C 1.39097 * 133.39730 * 180.02562 * 23 21 20 25 25 C 1.37725 * 119.94958 * 179.30796 * 24 23 21 26 26 C 1.39031 * 120.64804 * 0.56230 * 25 24 23 27 27 F 1.35096 * 119.83326 * 179.62138 * 26 25 24 28 28 C 1.37788 * 120.33527 * 359.63738 * 26 25 24 29 29 C 1.39678 * 119.62949 * 0.02562 * 28 26 25 30 30 H 1.08995 * 109.47467 * 300.00204 * 1 2 3 31 31 H 1.09002 * 109.46651 * 60.00173 * 1 2 3 32 32 H 1.08997 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47584 * 239.99880 * 2 1 3 34 34 H 1.08999 * 109.47010 * 120.00188 * 2 1 3 35 35 H 0.96995 * 119.99492 * 179.97438 * 7 6 4 36 36 H 1.09008 * 109.47034 * 150.00090 * 12 3 2 37 37 H 1.08996 * 109.47461 * 30.00030 * 12 3 2 38 38 H 1.08995 * 109.47247 * 60.00357 * 13 12 3 39 39 H 1.09004 * 109.47039 * 300.00027 * 13 12 3 40 40 H 1.09002 * 109.46938 * 60.00469 * 14 13 12 41 41 H 1.08996 * 109.47475 * 299.99961 * 14 13 12 42 42 H 0.97003 * 120.00114 * 0.02562 * 15 14 13 43 43 H 1.09003 * 109.46577 * 299.72585 * 18 16 15 44 44 H 1.08997 * 109.46838 * 59.72089 * 18 16 15 45 45 H 1.07997 * 125.03788 * 359.93886 * 20 19 18 46 46 H 1.07998 * 120.02417 * 359.94801 * 24 23 21 47 47 H 1.08002 * 119.67215 * 180.20531 * 25 24 23 48 48 H 1.07997 * 120.18868 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6489 8 14 3.0993 4.2798 -2.6582 9 1 1.7776 4.2136 -3.3319 10 1 3.2550 5.6024 -2.0012 11 1 4.1766 4.0966 -3.6637 12 6 2.3731 2.0326 1.2634 13 6 1.1424 2.7382 1.8366 14 6 1.5132 3.4190 3.1557 15 7 0.3350 4.0951 3.7043 16 6 0.4250 4.7670 4.8691 17 8 1.4812 4.8115 5.4635 18 6 -0.7886 5.4572 5.4366 19 6 -0.4246 6.1237 6.7382 20 6 -0.5810 5.6109 7.9690 21 7 -0.1375 6.5036 8.9060 22 1 -0.1482 6.3566 9.8648 23 6 0.3268 7.6427 8.2847 24 6 0.8745 8.8319 8.7546 25 6 1.2673 9.8068 7.8646 26 6 1.1118 9.6210 6.4956 27 9 1.4958 10.5915 5.6378 28 6 0.5677 8.4523 6.0093 29 6 0.1713 7.4521 6.9001 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.0491 3.4027 -0.7834 36 1 3.1617 2.7641 1.0861 37 1 2.7254 1.2833 1.9722 38 1 0.3540 2.0068 2.0139 39 1 0.7902 3.4876 1.1278 40 1 2.3015 4.1506 2.9780 41 1 1.8657 2.6700 3.8647 42 1 -0.5100 4.0592 3.2291 43 1 -1.1428 6.2082 4.7304 44 1 -1.5752 4.7234 5.6117 45 1 -0.9960 4.6380 8.1872 46 1 1.0011 8.9863 9.8159 47 1 1.6951 10.7271 8.2342 48 1 0.4484 8.3102 4.9454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752214543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:30 Heat of formation + Delta-G solvation = -15.220571 kcal Electronic energy + Delta-G solvation = -29336.734808 eV Core-core repulsion = 25113.767709 eV Total energy + Delta-G solvation = -4222.967099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -48.86462 -41.54217 -39.30368 -36.84254 -36.40719 -34.68797 -33.31405 -31.84421 -31.36817 -30.38469 -29.14778 -28.58300 -27.34631 -25.02879 -23.52070 -23.31880 -22.14912 -21.05653 -20.79911 -20.09351 -19.42947 -18.24909 -17.44624 -16.80111 -16.67266 -16.46870 -15.66412 -15.62430 -15.38630 -15.28689 -14.89712 -14.50466 -14.28882 -14.09038 -13.77711 -13.60803 -13.28612 -13.20059 -13.16565 -12.94769 -12.69289 -12.51579 -12.34779 -11.93107 -11.55176 -11.49979 -11.36030 -11.12914 -11.03442 -10.98268 -10.74758 -10.54251 -10.42909 -10.04056 -9.98672 -9.70064 -9.52893 -9.49738 -8.74854 -8.45518 -8.37070 -7.89316 -6.54476 -5.76421 -3.35745 0.76090 1.21057 2.33614 2.81856 2.85895 3.36236 3.42534 3.45869 3.47437 3.64106 4.11697 4.37333 4.49424 4.55054 4.65824 4.83523 4.97032 5.03545 5.12957 5.28305 5.31810 5.37448 5.43079 5.53138 5.58344 5.70423 5.79639 5.88515 5.99512 6.00757 6.04983 6.12100 6.31725 6.37431 6.41769 6.46007 6.46328 6.53034 6.60924 6.77732 6.84644 6.84792 6.92497 7.11694 7.19681 7.22248 7.70641 7.76108 7.84731 8.46906 8.54685 9.21916 9.84295 10.43156 11.22923 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.002251 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.663757 B =12438.138067 C =14132.282455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.145 4.145 14 C 0.121 3.879 15 N -0.729 5.729 16 C 0.505 3.495 17 O -0.534 6.534 18 C -0.068 4.068 19 C -0.149 4.149 20 C 0.072 3.928 21 N -0.592 5.592 22 H 0.417 0.583 23 C 0.086 3.914 24 C -0.101 4.101 25 C -0.133 4.133 26 C 0.070 3.930 27 F -0.143 7.143 28 C -0.101 4.101 29 C -0.064 4.064 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.033 0.967 35 H 0.254 0.746 36 H 0.095 0.905 37 H 0.024 0.976 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.398 0.602 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.172 0.828 46 H 0.129 0.871 47 H 0.137 0.863 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 8.180 20.787 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.023 3.977 13 C -0.186 4.186 14 C -0.002 4.002 15 N -0.380 5.380 16 C 0.291 3.709 17 O -0.411 6.411 18 C -0.108 4.108 19 C -0.156 4.156 20 C -0.055 4.055 21 N -0.195 5.195 22 H 0.254 0.746 23 C -0.021 4.021 24 C -0.122 4.122 25 C -0.153 4.153 26 C 0.049 3.951 27 F -0.122 7.122 28 C -0.121 4.121 29 C -0.069 4.069 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.231 0.769 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.190 0.810 46 H 0.147 0.853 47 H 0.155 0.845 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.256 8.254 21.283 25.909 hybrid contribution -0.339 0.791 -0.622 1.062 sum -12.595 9.045 20.661 25.832 Atomic orbital electron populations 1.22367 1.00192 0.98844 1.01104 1.20844 0.91668 0.87442 0.98682 1.43753 1.76063 1.08174 1.02524 1.19004 1.04627 1.21153 0.94151 0.92320 1.25196 0.94236 1.01317 0.98057 1.70008 1.03201 1.37238 1.42346 0.86378 0.77644 0.82383 0.81278 1.20110 1.21377 1.21653 1.20799 0.94521 0.96632 0.85717 1.22520 1.02253 0.99827 0.93990 1.21444 0.87255 0.96034 0.95496 1.46202 1.14413 1.53936 1.23482 1.20634 0.90335 0.78999 0.80975 1.90715 1.30317 1.60411 1.59608 1.19976 0.96631 0.99892 0.94333 1.19518 1.08668 0.94054 0.93383 1.21585 1.01159 0.95018 0.87710 1.41650 1.55381 1.13662 1.08805 0.74575 1.18206 1.02306 0.89530 0.92019 1.19785 1.01628 0.91139 0.99598 1.20726 1.03095 1.00448 0.91056 1.17283 1.03202 0.87220 0.87345 1.91487 1.89351 1.61447 1.69872 1.20422 0.99819 0.91576 1.00273 1.18687 1.02178 0.94513 0.91536 0.93799 0.93277 0.94674 0.93928 0.94881 0.93562 0.88764 0.95747 0.93115 0.91760 0.91694 0.92201 0.76864 0.88218 0.88147 0.81040 0.85307 0.84544 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -14.20 2.43 -173.23 -0.42 -14.62 16 4 C -0.26 -6.96 9.45 -15.06 -0.14 -7.10 16 5 H 0.06 1.58 7.92 -52.49 -0.42 1.17 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -25.42 11.47 55.49 0.64 -24.78 16 8 Si 0.89 21.45 29.60 -169.99 -5.03 16.42 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.15 3.41 5.33 -4.04 -0.02 3.39 16 13 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 14 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 15 N -0.73 -9.82 5.56 -60.29 -0.33 -10.15 16 16 C 0.51 7.07 7.82 -10.98 -0.09 6.98 16 17 O -0.53 -9.91 16.03 5.56 0.09 -9.82 16 18 C -0.07 -0.65 6.23 -29.04 -0.18 -0.83 16 19 C -0.15 -1.63 4.81 -102.71 -0.49 -2.12 16 20 C 0.07 0.61 11.73 -16.74 -0.20 0.42 16 21 N -0.59 -4.67 6.07 -10.64 -0.06 -4.73 16 22 H 0.42 1.84 8.96 -40.82 -0.37 1.47 16 23 C 0.09 0.90 7.27 -83.95 -0.61 0.29 16 24 C -0.10 -0.90 10.06 -39.45 -0.40 -1.30 16 25 C -0.13 -1.32 9.99 -39.47 -0.39 -1.71 16 26 C 0.07 0.85 7.29 -39.45 -0.29 0.56 16 27 F -0.14 -1.86 17.26 2.25 0.04 -1.82 16 28 C -0.10 -1.29 10.07 -39.21 -0.40 -1.68 16 29 C -0.06 -0.79 6.35 -105.13 -0.67 -1.46 16 30 H 0.04 0.74 6.64 -51.93 -0.34 0.40 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 36 H 0.09 2.46 5.52 -51.92 -0.29 2.17 16 37 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 38 H 0.05 0.86 6.64 -51.93 -0.34 0.52 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 404.56 15.07 6.10 6.10 Total: -1.00 -34.25 404.56 -9.90 -44.15 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.12 Total: 4.03 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.78 Total: -4.76 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.18 Total: -54.29 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.25 -9.90 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752214543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.925 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds